mRNA_P-fluviatile_contig90.15426.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig90.15426.1
Unique NamemRNA_P-fluviatile_contig90.15426.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A5N6NFM9_9ASTR (Uncharacterized protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFM9_9ASTR)

HSP 1 Score: 95.1 bits (235), Expect = 1.860e-21
Identity = 48/72 (66.67%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFLFPGSRGPGNLLNVH 216
            MGGGAWPFLVGG ICLVNSVNE+D  LL S A    VCDALRC GPHARYTD  NE++    R PG  L  H
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNEQDLSLLTSYAE---VCDALRCSGPHARYTDVFNEYIALADR-PGKSLKFH 68
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A8D9DBA2_BRACM ((field mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9DBA2_BRACM)

HSP 1 Score: 90.1 bits (222), Expect = 1.260e-19
Identity = 47/65 (72.31%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFLFPGSRGP 195
            MGGGAWPFLVGG ICLVNSVNERD  LL S      VCDALRC GPHARYTD  NEF  P   GP
Sbjct:    1 MGGGAWPFLVGGEICLVNSVNERDLSLLTSY-----VCDALRCSGPHARYTDVFNEFT-PWLTGP 59
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A0D2ZQ56_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D2ZQ56_BRAOL)

HSP 1 Score: 91.3 bits (225), Expect = 1.560e-19
Identity = 47/65 (72.31%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFLFPGSRGP 195
            MGGGAWPFLVGG ICLVNSVNERD  LL S      VCDALRC GPHARYTD  NEF  P   GP
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSY-----VCDALRCSGPHARYTDVFNEFT-PWPTGP 59
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A6A5L3Q3_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L3Q3_LUPAL)

HSP 1 Score: 89.0 bits (219), Expect = 3.330e-19
Identity = 46/67 (68.66%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFLF----PGSR 189
            MGGGAWPFLVGG ICLVNSVNERD  LL S      VCDALRC GPHARYTD  NE +     PG R
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVE---VCDALRCSGPHARYTDVFNESIALADRPGKR 64
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A6A5L6D6_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6D6_LUPAL)

HSP 1 Score: 88.6 bits (218), Expect = 3.550e-19
Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFL 174
            MGGGAWPFLVGG ICLVNSVNERD  LL S      VCDALRC GPHARYTD  NE +
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVE---VCDALRCSGPHARYTDVFNESI 55
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A2P5W4F7_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5W4F7_GOSBA)

HSP 1 Score: 89.0 bits (219), Expect = 5.430e-19
Identity = 47/71 (66.20%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFLFPGSRGPGNLLNV 213
            MGGGAWPFLVGG ICLVNSVNERD  LL S      VCDALRC GPHARYTD  NE +    R PG    V
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYTE---VCDALRCSGPHARYTDVFNESIALADR-PGRSDTV 67
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A6A5L666_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L666_LUPAL)

HSP 1 Score: 88.6 bits (218), Expect = 5.670e-19
Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFL 174
            MGGGAWPFLVGG ICLVNSVNERD  LL S      VCDALRC GPHARYTD  NE +
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVE---VCDALRCSGPHARYTDVFNESI 55
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A835JQG9_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835JQG9_9ROSI)

HSP 1 Score: 91.7 bits (226), Expect = 6.740e-19
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFLF----PGSRGPGNLLNV 213
            MGGGAWPFLVGG IC+VNSVNERD  LL S A    VCDALRC GPHARYTD  NE +     PG R   N ++V
Sbjct:    1 MGGGAWPFLVGGAICVVNSVNERDLSLLTSYAE---VCDALRCSGPHARYTDVFNESIALADRPGGRRSRNKVSV 72
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BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A6A5L9L7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L9L7_LUPAL)

HSP 1 Score: 90.9 bits (224), Expect = 2.490e-18
Identity = 47/68 (69.12%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFLFPGSRGPGNL 204
            MGGGAWPFLVGG ICLVNSVNERD  LL S      VCDALRC GPHARYTD  NE +    R PG+L
Sbjct:    1 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVE---VCDALRCSGPHARYTDVFNESIALADR-PGSL 64
[Close]
BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Match: A0A835J4A1_9ROSI (Uncharacterized protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835J4A1_9ROSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.930e-18
Identity = 48/75 (64.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARYTDACNEFLF----PGSRGPGNLLNV 213
            MGGGAW FLVGG ICLVNSVNERD  LL S A    VCDALRC GPHARYTD  NE +     PG R   N ++V
Sbjct:    1 MGGGAWSFLVGGAICLVNSVNERDLSLLTSYAE---VCDALRCSGPHARYTDVFNESIALADRPGGRRSRNKVSV 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig90.15426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6NFM9_9ASTR1.860e-2166.67Uncharacterized protein n=2 Tax=Mikania micrantha ... [more]
A0A8D9DBA2_BRACM1.260e-1972.31(field mustard) hypothetical protein n=1 Tax=Brass... [more]
A0A0D2ZQ56_BRAOL1.560e-1972.31Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
A0A6A5L3Q3_LUPAL3.330e-1968.66Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6D6_LUPAL3.550e-1974.14Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A2P5W4F7_GOSBA5.430e-1966.20Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]
A0A6A5L666_LUPAL5.670e-1974.14Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A835JQG9_9ROSI6.740e-1964.00Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]
A0A6A5L9L7_LUPAL2.490e-1869.12Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A835J4A1_9ROSI3.930e-1864.00Uncharacterized protein n=1 Tax=Salix dunnii TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig90contigP-fluviatile_contig90:12993..14121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog3694.POPTR_0009s00340.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38AEX@33090,3GP7Q@35493,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size698
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig90.15426.1prot_P-fluviatile_contig90.15426.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig90 12993..13903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.2600484-CDS-P-fluviatile_contig90:12992..131001622817356.2600484-CDS-P-fluviatile_contig90:12992..13100Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 12993..13100 +
1693572207.322085-CDS-P-fluviatile_contig90:12992..131001693572207.322085-CDS-P-fluviatile_contig90:12992..13100Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 12993..13100 +
1622817356.2703996-CDS-P-fluviatile_contig90:13164..132731622817356.2703996-CDS-P-fluviatile_contig90:13164..13273Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 13165..13273 +
1693572207.505063-CDS-P-fluviatile_contig90:13164..132731693572207.505063-CDS-P-fluviatile_contig90:13164..13273Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 13165..13273 +
1622817356.280395-CDS-P-fluviatile_contig90:13640..139031622817356.280395-CDS-P-fluviatile_contig90:13640..13903Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 13641..13903 +
1693572207.6513052-CDS-P-fluviatile_contig90:13640..139031693572207.6513052-CDS-P-fluviatile_contig90:13640..13903Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 13641..13903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.2905557-UTR-P-fluviatile_contig90:13903..141211622817356.2905557-UTR-P-fluviatile_contig90:13903..14121Porterinema fluviatile SAG_2381UTRP-fluviatile_contig90 13904..14121 +
1693572207.661206-UTR-P-fluviatile_contig90:13903..141211693572207.661206-UTR-P-fluviatile_contig90:13903..14121Porterinema fluviatile SAG_2381UTRP-fluviatile_contig90 13904..14121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig90.15426.1

>prot_P-fluviatile_contig90.15426.1 ID=prot_P-fluviatile_contig90.15426.1|Name=mRNA_P-fluviatile_contig90.15426.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=160bp
MGGGAWPFLVGGVICLVNSVNERDPRLLNSVAYAFCVCDALRCPGPHARY
TDACNEFLFPGSRGPGNLLNVHHGARRLARGPNATRSGPGRQAHDRRSDE
AETTRTKRTIMRCRASRPPSFAKLEPKRTPLFNPEQTLNLNSKGGGAAPG
CRPPNHLTL*
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mRNA from alignment at P-fluviatile_contig90:12993..14121+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig90.15426.1 ID=mRNA_P-fluviatile_contig90.15426.1|Name=mRNA_P-fluviatile_contig90.15426.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1129bp|location=Sequence derived from alignment at P-fluviatile_contig90:12993..14121+ (Porterinema fluviatile SAG_2381)
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGT
TAATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGTGGCTTACG
CTTTTTGCGTAGGTGCTCGCTTCTTAGAGGGACTTCTGGTGACTAACCAG
AGGAAGTTGGGGGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGC
CGCACGCGCGCTACACTGATGCATGCAACGAGTTTCTTTTTCCTGGGTCG
AGAGGCCCGGGTAATCTGTTGAACGTGCATCGTGATAGGGATAGATCATT
GCAATTATTGATCTTGAACGAGGAATTCCTAGTAAACGCGAGTCATCAGC
TCGCATTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCACCTAC
CGATTGAATCATTCGGTGAGGATTCCGGATTTCGCTGCTCACGCTTAACG
GCGTTTTTAACGAAAGAAGTTATCCAAACCTCATGATTTAGAGGAAGGTG
AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCGA
AGCGTCGCCGCTCGCTCGTCCCCGCGTCGAGCGGGCGTCCATTCGCTTTA
CTTCAAAGTAAACTGTCCACGTCTCTCTCAATTTCCTTCACCGCCTAGAT
GGGGCGCGCCGGCTGGCCAGGGGTCCCAACGCAACGCGTTCGGGTCCCGG
CCGGCAGGCTCACGACCGTCGAAGCGACGAAGCAGAAACCACGCGAACGA
AAAGAACCATTATGCGATGTCGGGCGAGTCGCCCGCCGAGCTTCGCTAAG
CTCGAACCAAAGCGCACCCCACTCTTCAACCCCGAACAAACTCTGAATCT
GAACTCAAAGGGAGGCGGCGCCGCACCAGGCTGCCGCCCCCCCAACCATT
TAACGTTGTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAACGATGA
AGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAAT
CATCAAAACTTTGAACGCATCTTGCGCTTCCGGGATATGCCTGGGAGCAT
GCTTGTCGGAGTGTCTGTTGACACCACTCGCCCGTCGCCCCTCCCCGAAC
GGGGGGGGGGGGCCGCCGCGGGCGGACTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig90:12993..14121+

>mRNA_P-fluviatile_contig90.15426.1 ID=mRNA_P-fluviatile_contig90.15426.1|Name=mRNA_P-fluviatile_contig90.15426.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=960bp|location=Sequence derived from alignment at P-fluviatile_contig90:12993..14121+ (Porterinema fluviatile SAG_2381)
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGT
TAATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGTGGCTTACG
CTTTTTGCATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATT
TGTCTGGTTAATTCCGTTAACGAACGAGACCCCCGCCTGCTAAATAGTGT
GGCTTACGCTTTTTGCGTCTGTGATGCCCTTAGATGTCCTGGGCCGCACG
CGCGCTACACTGATGCATGCAACGAGTTTCTTTTTCCTGGGTCGAGAGGC
CCGGGTAATCTGTTGAACGTGCATCGTCTGTGATGCCCTTAGATGTCCTG
GGCCGCACGCGCGCTACACTGATGCATGCAACGAGTTTCTTTTTCCTGGG
TCGAGAGGCCCGGGTAATCTGTTGAACGTGCATCATGGGGCGCGCCGGCT
GGCCAGGGGTCCCAACGCAACGCGTTCGGGTCCCGGCCGGCAGGCTCACG
ACCGTCGAAGCGACGAAGCAGAAACCACGCGAACGAAAAGAACCATTATG
CGATGTCGGGCGAGTCGCCCGCCGAGCTTCGCTAAGCTCGAACCAAAGCG
CACCCCACTCTTCAACCCCGAACAAACTCTGAATCTGAACTCAAAGGGAG
GCGGCGCCGCACCAGGCTGCCGCCCCCCCAACCATTTAACGTTGTAAATG
GGGCGCGCCGGCTGGCCAGGGGTCCCAACGCAACGCGTTCGGGTCCCGGC
CGGCAGGCTCACGACCGTCGAAGCGACGAAGCAGAAACCACGCGAACGAA
AAGAACCATTATGCGATGTCGGGCGAGTCGCCCGCCGAGCTTCGCTAAGC
TCGAACCAAAGCGCACCCCACTCTTCAACCCCGAACAAACTCTGAATCTG
AACTCAAAGGGAGGCGGCGCCGCACCAGGCTGCCGCCCCCCCAACCATTT
AACGTTGTAA
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