mRNA_P-fluviatile_contig9.15148.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig9.15148.1
Unique Name	mRNA_P-fluviatile_contig9.15148.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5L2N3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N3_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.330e-43
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 2

Query:    2 VLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            VLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:   10 VLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5K7B5_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B5_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.380e-43
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 2

Query:    2 VLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            VLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:   10 VLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5JMR3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR3_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.610e-43
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 2

Query:    2 VLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            VLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:   10 VLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5JH77_9PHAE (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH77_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.260e-40
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 2

Query:    2 VLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            VLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:   10 VLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5KQE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.430e-39
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 2

Query:    2 VLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            VLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:   10 VLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.420e-39
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 2

Query:    2 VLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            VLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:   10 VLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5JUK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK8_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.320e-37
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 2

Query:    2 VLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            VLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAA+TYGLPLASLHDRVK KVAIDA+VGPGTVLSKE EDFVEDVLI
Sbjct:   48 VLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAAKTYGLPLASLHDRVKKKVAIDAKVGPGTVLSKEGEDFVEDVLI 124

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5LAK0_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAK0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.090e-36
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 2

Query:   23 RTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            R   DPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:   32 RVNQDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 101

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5JPC4_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.870e-31
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 2

Query:    2 VLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            +LL SMGRTRVDPEQAQKAVDAVRSG+MS+R AA  YGL   SLH R+ NKVAIDA+V PGTVLSKEEE+FVEDVL+
Sbjct:   10 LLLPSMGRTRVDPEQAQKAVDAVRSGQMSVRGAAEAYGLSRNSLHSRLTNKVAIDAKVAPGTVLSKEEEEFVEDVLV 86

[Close]

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Match: A0A6H5K5E3_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5E3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 9.080e-31
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 2

Query:   23 RTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 232
            R RVDPEQAQK VDAVRSG+MSLRVAA+TY LPLASLHDRVK +VAIDA VGPGTVLSKEEE FVEDVLI
Sbjct:   70 RPRVDPEQAQKTVDAVRSGQMSLRVAAKTYRLPLASLHDRVKKEVAIDASVGPGTVLSKEEEGFVEDVLI 139

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig9.15148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L2N3_9PHAE	1.330e-43	98.70	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5K7B5_9PHAE	2.380e-43	98.70	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5JMR3_9PHAE	7.610e-43	98.70	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5JH77_9PHAE	9.260e-40	98.70	S5A_REDUCTASE domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KQE4_9PHAE	3.430e-39	98.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1T0_9PHAE	4.420e-39	98.70	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUK8_9PHAE	6.320e-37	93.51	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5LAK0_9PHAE	2.090e-36	95.71	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5JPC4_9PHAE	1.870e-31	77.92	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5K5E3_9PHAE	9.080e-31	87.14	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig9	contig	P-fluviatile_contig9:1383269..1383500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	233
Cds size	216
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817321.8114035-UTR-P-fluviatile_contig9:1383268..1383284	1622817321.8114035-UTR-P-fluviatile_contig9:1383268..1383284	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig9 1383269..1383284 +
1693572056.2068985-UTR-P-fluviatile_contig9:1383268..1383284	1693572056.2068985-UTR-P-fluviatile_contig9:1383268..1383284	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig9 1383269..1383284 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817321.8257644-CDS-P-fluviatile_contig9:1383284..1383500	1622817321.8257644-CDS-P-fluviatile_contig9:1383284..1383500	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig9 1383285..1383500 +
1693572056.2188077-CDS-P-fluviatile_contig9:1383284..1383500	1693572056.2188077-CDS-P-fluviatile_contig9:1383284..1383500	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig9 1383285..1383500 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig9.15148.1	prot_P-fluviatile_contig9.15148.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig9 1383285..1383500 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig9:1383269..1383500+
coding sequence from alignment at P-fluviatile_contig9:1383269..1383500+

protein sequence of mRNA_P-fluviatile_contig9.15148.1

>prot_P-fluviatile_contig9.15148.1 ID=prot_P-fluviatile_contig9.15148.1|Name=mRNA_P-fluviatile_contig9.15148.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=72bp
MGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAID
ARVGPGTVLSKEEEDFVEDVLI

mRNA from alignment at P-fluviatile_contig9:1383269..1383500+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig9.15148.1 ID=mRNA_P-fluviatile_contig9.15148.1|Name=mRNA_P-fluviatile_contig9.15148.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=232bp|location=Sequence derived from alignment at P-fluviatile_contig9:1383269..1383500+ (Porterinema fluviatile SAG_2381)
GGTCCTGCTGCTAAGCATGGGACGTACGAGAGTAGACCCAGAGCAGGCCC
AGAAGGCTGTAGATGCGGTACGCAGCGGTGAGATGTCGCTCCGCGTTGCT
GCGAGGACCTACGGGTTACCGCTAGCCTCGCTGCACGACCGTGTGAAGAA
CAAGGTGGCCATAGATGCGAGGGTTGGTCCCGGGACTGTCCTGAGCAAGG
AGGAGGAAGATTTCGTAGAAGACGTCTTGATC

Coding sequence (CDS) from alignment at P-fluviatile_contig9:1383269..1383500+

>mRNA_P-fluviatile_contig9.15148.1 ID=mRNA_P-fluviatile_contig9.15148.1|Name=mRNA_P-fluviatile_contig9.15148.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=432bp|location=Sequence derived from alignment at P-fluviatile_contig9:1383269..1383500+ (Porterinema fluviatile SAG_2381)
ATGGGACGTACGAGAGTAGACCCAGAGCAGGCCCAGAAGGCTGTAGATGC
GGTACGCAGCGGTGAGATGTCGCTCCGCGTTGCTGCGAGGACCTACGGGT
TACCGCTAGCCTCGCTGCACGACCGTGTGAAGAACAAGGTGGCCATAGAT
GCGAGGGTTGGTCCCGGGACTGTCCTGAGCAAGGAGGAGGAAGATTTCGT
AGAAGACGTCTTGATCATGGGACGTACGAGAGTAGACCCAGAGCAGGCCC
AGAAGGCTGTAGATGCGGTACGCAGCGGTGAGATGTCGCTCCGCGTTGCT
GCGAGGACCTACGGGTTACCGCTAGCCTCGCTGCACGACCGTGTGAAGAA
CAAGGTGGCCATAGATGCGAGGGTTGGTCCCGGGACTGTCCTGAGCAAGG
AGGAGGAAGATTTCGTAGAAGACGTCTTGATC