mRNA_P-fluviatile_contig89.14963.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14963.1
Unique NamemRNA_P-fluviatile_contig89.14963.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: A0A1I9LVW6_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW6_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 4.790e-89
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTKIN 408
            MLSPKKTKF+KQHRGRLKGKASRGN INFG+YA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPG+ILFELSGVPLKLAKEALQIASYKLPIKTKFLTKIN
Sbjct:    1 MLSPKKTKFKKQHRGRLKGKASRGNNINFGEYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGHILFELSGVPLKLAKEALQIASYKLPIKTKFLTKIN 136
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: D1J745_ECTSI (50S ribosomal protein L16, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=D1J745_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 7.150e-86
Identity = 127/134 (94.78%), Postives = 131/134 (97.76%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            MLSPKKTKFRKQHRGRLKGKASRGN+INFGDYA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPG+ILFEL GVP KLAKEAL+IASYKLPIKTKFL K
Sbjct:    1 MLSPKKTKFRKQHRGRLKGKASRGNSINFGDYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGHILFELGGVPAKLAKEALEIASYKLPIKTKFLKK 134
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: A0A0R6M0J1_UNDPI (50S ribosomal protein L16, chloroplastic n=49 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M0J1_UNDPI)

HSP 1 Score: 251 bits (640), Expect = 4.830e-84
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFL 396
            MLSPKKTKFRKQHRGRLKGKASRGN I+FGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKP+TARAAESRMGSGKGSV+YWVAVVKPG ILFELSGVPLKLAKEA+ IASYKLPIKTKFL
Sbjct:    1 MLSPKKTKFRKQHRGRLKGKASRGNKISFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPVTARAAESRMGSGKGSVDYWVAVVKPGTILFELSGVPLKLAKEAMIIASYKLPIKTKFL 132
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: A0A8E5XRJ0_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ0_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 5.270e-80
Identity = 118/134 (88.06%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            MLSPK+TKFRKQHRGRLKGKA RGN INFG+YAIQALEP W+TSRQIEATRRTITRYTKRGGKLWIT+FPDKPITARAAESRMGSGKGSV+YWVAVVKPG+ILFELSGV  K+AKEA++IASYKLPI+TKFL K
Sbjct:    1 MLSPKRTKFRKQHRGRLKGKACRGNKINFGNYAIQALEPAWITSRQIEATRRTITRYTKRGGKLWITIFPDKPITARAAESRMGSGKGSVDYWVAVVKPGSILFELSGVSPKIAKEAMKIASYKLPIRTKFLMK 134
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: A0A2I4Q2I6_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I6_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 7.230e-80
Identity = 120/134 (89.55%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            MLSPKKTKF+KQ RGRLKGKAS GNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKG+++YWVA VKPG ILFELSGV   LAKEA++IASYKLPIKTKF+TK
Sbjct:    1 MLSPKKTKFKKQQRGRLKGKASSGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGALDYWVAKVKPGTILFELSGVNPTLAKEAMKIASYKLPIKTKFITK 134
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: A0A8E5BFH8_9PHAE (Ribosomal protein L16 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BFH8_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 2.580e-79
Identity = 115/134 (85.82%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            MLSPKKT F+KQHRGRLKGKASR NTI+FGDYAIQALEP WLTSRQIEATRRTITRYTKRGGKLWI VFPDKPITAR  ESRMGSGKGSV+YWVA++KPG +LFELSGVP+ +AKEA++IASYKLPIKTKFL K
Sbjct:    1 MLSPKKTNFKKQHRGRLKGKASRNNTIHFGDYAIQALEPVWLTSRQIEATRRTITRYTKRGGKLWIKVFPDKPITARVPESRMGSGKGSVDYWVAIIKPGTVLFELSGVPINIAKEAMKIASYKLPIKTKFLIK 134
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: B2XTE8_HETAK (50S ribosomal protein L16, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTE8_HETAK)

HSP 1 Score: 238 bits (606), Expect = 8.170e-79
Identity = 114/134 (85.07%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            ML PK+TKFRKQHRGRLKGKA RGN I++GDYA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKP+T RAAESRMGSGKG+VEYWVAVVKPG ILFE+SGVPL+LAK A++ ASYKLP+KTKF+T+
Sbjct:    1 MLLPKRTKFRKQHRGRLKGKACRGNKISYGDYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPVTFRAAESRMGSGKGAVEYWVAVVKPGKILFEMSGVPLELAKAAMKTASYKLPVKTKFITR 134
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: A0A1G4NTX4_9FLOR (50S ribosomal protein L16, chloroplastic n=2 Tax=Liagoraceae TaxID=31484 RepID=A0A1G4NTX4_9FLOR)

HSP 1 Score: 233 bits (595), Expect = 3.880e-77
Identity = 110/134 (82.09%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            MLSPK+TKFRKQHRGRLKGKAS+GNTI+FGDYA+QALEP WLTSRQIEATRRTITRY KRGGKLWI VFPDKP+TAR AE+RMGSGKG+ EYWVAV+KPG+ILFE++GVP K AK+A+++ASYKLPIKTKF+T+
Sbjct:    1 MLSPKRTKFRKQHRGRLKGKASKGNTISFGDYALQALEPVWLTSRQIEATRRTITRYVKRGGKLWIRVFPDKPVTARPAETRMGSGKGAPEYWVAVIKPGHILFEMNGVPEKAAKQAMKLASYKLPIKTKFITR 134
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: A0A1G4P0N4_9FLOR (50S ribosomal protein L16, chloroplastic n=21 Tax=Nemaliophycidae TaxID=2045258 RepID=A0A1G4P0N4_9FLOR)

HSP 1 Score: 232 bits (592), Expect = 1.010e-76
Identity = 110/134 (82.09%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            MLSPK+TKFRKQHRGR+KGKASRGNTI FGDYA+QALEP WLTSRQIEATRRTITRY KRGGKLWI VFPDKP+TAR AE+RMGSGKG+ EYWVAV+KPG+ILFE++GVP K AKEA+ +ASYKLPI+TKF+T+
Sbjct:    1 MLSPKRTKFRKQHRGRMKGKASRGNTIAFGDYALQALEPVWLTSRQIEATRRTITRYVKRGGKLWIRVFPDKPVTARPAETRMGSGKGAPEYWVAVIKPGHILFEINGVPEKAAKEAMNLASYKLPIRTKFITR 134
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BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Match: M4IU60_CALTB (50S ribosomal protein L16, chloroplastic n=4 Tax=Corallinoideae TaxID=48611 RepID=M4IU60_CALTB)

HSP 1 Score: 231 bits (590), Expect = 2.170e-76
Identity = 110/134 (82.09%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGNILFELSGVPLKLAKEALQIASYKLPIKTKFLTK 402
            MLSPKKTKFRKQHRGRL+GKAS+GN I+FGDYA+QALEP WLTSRQIEATRRTITRY +RGGKLWI VFPDKP+TARAAE+RMGSGKG+ EYWVAV+KPG+ILFE++GVP K AK+A+++ASYKLPIKTKF+TK
Sbjct:    1 MLSPKKTKFRKQHRGRLRGKASKGNYISFGDYALQALEPVWLTSRQIEATRRTITRYVRRGGKLWIRVFPDKPVTARAAETRMGSGKGAPEYWVAVIKPGHILFEMNGVPEKDAKQAMKLASYKLPIKTKFITK 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVW6_9PHAE4.790e-8996.3250S ribosomal protein L16, chloroplastic n=1 Tax=P... [more]
D1J745_ECTSI7.150e-8694.7850S ribosomal protein L16, chloroplastic n=6 Tax=P... [more]
A0A0R6M0J1_UNDPI4.830e-8494.7050S ribosomal protein L16, chloroplastic n=49 Tax=... [more]
A0A8E5XRJ0_9PHAE5.270e-8088.0650S ribosomal protein L16, chloroplastic n=1 Tax=I... [more]
A0A2I4Q2I6_9PHAE7.230e-8089.5550S ribosomal protein L16, chloroplastic n=1 Tax=D... [more]
A0A8E5BFH8_9PHAE2.580e-7985.82Ribosomal protein L16 n=1 Tax=Phaeophyceae sp. Tax... [more]
B2XTE8_HETAK8.170e-7985.0750S ribosomal protein L16, chloroplastic n=2 Tax=H... [more]
A0A1G4NTX4_9FLOR3.880e-7782.0950S ribosomal protein L16, chloroplastic n=2 Tax=L... [more]
A0A1G4P0N4_9FLOR1.010e-7682.0950S ribosomal protein L16, chloroplastic n=21 Tax=... [more]
M4IU60_CALTB2.170e-7682.0950S ribosomal protein L16, chloroplastic n=4 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:48541..48951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.6
Seed ortholog evalue2.6e-65
Seed eggNOG ortholog2880.D1J745
Preferred nameMRPL16
KEGG koko:K02874,ko:K02878,ko:K10756
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00178,M00179,M00289,M00295
GOsGO:0000048,GO:0000313,GO:0000314,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005763,GO:0005829,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019843,GO:0019866,GO:0022411,GO:0022625,GO:0022626,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0197@1,KOG3422@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.6150231-CDS-P-fluviatile_contig89:48540..489511622817299.6150231-CDS-P-fluviatile_contig89:48540..48951Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 48541..48951 +
1693571985.0282018-CDS-P-fluviatile_contig89:48540..489511693571985.0282018-CDS-P-fluviatile_contig89:48540..48951Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 48541..48951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14963.1prot_P-fluviatile_contig89.14963.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 48541..48951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14963.1

>prot_P-fluviatile_contig89.14963.1 ID=prot_P-fluviatile_contig89.14963.1|Name=mRNA_P-fluviatile_contig89.14963.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=137bp
MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEAT
RRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPG
NILFELSGVPLKLAKEALQIASYKLPIKTKFLTKIN*
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mRNA from alignment at P-fluviatile_contig89:48541..48951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14963.1 ID=mRNA_P-fluviatile_contig89.14963.1|Name=mRNA_P-fluviatile_contig89.14963.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=411bp|location=Sequence derived from alignment at P-fluviatile_contig89:48541..48951+ (Porterinema fluviatile SAG_2381)
ATGCTTAGTCCTAAGAAAACAAAATTTAGAAAACAACATCGTGGTAGGTT
AAAGGGAAAAGCGTCGAGAGGAAATACTATTAATTTTGGAGATTATGCGA
TTCAAGCATTAGAACCTACTTGGCTAACGTCCCGACAAATTGAAGCTACT
CGTAGAACAATAACGAGATACACAAAGCGTGGTGGTAAATTATGGATAAC
AGTTTTTCCTGATAAACCAATAACAGCTAGAGCCGCTGAATCAAGGATGG
GATCAGGGAAAGGGTCAGTTGAATATTGGGTTGCTGTAGTGAAACCTGGG
AATATTTTGTTTGAGTTAAGTGGGGTTCCTTTAAAACTTGCAAAAGAAGC
CTTACAAATTGCTTCTTATAAGTTACCAATTAAAACAAAATTCTTGACAA
AGATAAATTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:48541..48951+

>mRNA_P-fluviatile_contig89.14963.1 ID=mRNA_P-fluviatile_contig89.14963.1|Name=mRNA_P-fluviatile_contig89.14963.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=822bp|location=Sequence derived from alignment at P-fluviatile_contig89:48541..48951+ (Porterinema fluviatile SAG_2381)
ATGCTTAGTCCTAAGAAAACAAAATTTAGAAAACAACATCGTGGTAGGTT
AAAGGGAAAAGCGTCGAGAGGAAATACTATTAATTTTGGAGATTATGCGA
TTCAAGCATTAGAACCTACTTGGCTAACGTCCCGACAAATTGAAGCTACT
CGTAGAACAATAACGAGATACACAAAGCGTGGTGGTAAATTATGGATAAC
AGTTTTTCCTGATAAACCAATAACAGCTAGAGCCGCTGAATCAAGGATGG
GATCAGGGAAAGGGTCAGTTGAATATTGGGTTGCTGTAGTGAAACCTGGG
AATATTTTGTTTGAGTTAAGTGGGGTTCCTTTAAAACTTGCAAAAGAAGC
CTTACAAATTGCTTCTTATAAGTTACCAATTAAAACAAAATTCTTGACAA
AGATAAATTAAATGCTTAGTCCTAAGAAAACAAAATTTAGAAAACAACAT
CGTGGTAGGTTAAAGGGAAAAGCGTCGAGAGGAAATACTATTAATTTTGG
AGATTATGCGATTCAAGCATTAGAACCTACTTGGCTAACGTCCCGACAAA
TTGAAGCTACTCGTAGAACAATAACGAGATACACAAAGCGTGGTGGTAAA
TTATGGATAACAGTTTTTCCTGATAAACCAATAACAGCTAGAGCCGCTGA
ATCAAGGATGGGATCAGGGAAAGGGTCAGTTGAATATTGGGTTGCTGTAG
TGAAACCTGGGAATATTTTGTTTGAGTTAAGTGGGGTTCCTTTAAAACTT
GCAAAAGAAGCCTTACAAATTGCTTCTTATAAGTTACCAATTAAAACAAA
ATTCTTGACAAAGATAAATTAA
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