mRNA_P-fluviatile_contig89.14961.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14961.1
Unique NamemRNA_P-fluviatile_contig89.14961.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: D1J749_ECTSI (50S ribosomal protein L2, chloroplastic n=39 Tax=Phaeophyceae TaxID=2870 RepID=D1J749_ECTSI)

HSP 1 Score: 509 bits (1310), Expect = 1.440e-181
Identity = 246/275 (89.45%), Postives = 260/275 (94.55%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSRT 825
            M IRICKVYT GTRNT+FSSFDEITK+KPEK LI KNHRKKGRNNQGLIT       HKRRYRMIDFKRKKHNI+G VFAIEYDPNRNARIALIHYENGDK YIICPDSL++G+KI+SGP+ PIEIGNALPLEKIPLGTA+HNIELSYNKGGQIVRAAGTSARILAKESDYVT+RLPSKEIR++HKNCYATIG VSN+DHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSR+
Sbjct:    1 MAIRICKVYTVGTRNTVFSSFDEITKTKPEKKLIGKNHRKKGRNNQGLITTRHHGGGHKRRYRMIDFKRKKHNIIGSVFAIEYDPNRNARIALIHYENGDKNYIICPDSLKIGSKIISGPSVPIEIGNALPLEKIPLGTAIHNIELSYNKGGQIVRAAGTSARILAKESDYVTVRLPSKEIRIIHKNCYATIGIVSNKDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSRS 275          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: A0A141BSN8_9PHAE (50S ribosomal protein L2, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN8_9PHAE)

HSP 1 Score: 482 bits (1240), Expect = 6.700e-171
Identity = 227/274 (82.85%), Postives = 257/274 (93.80%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSR 822
            MTIRICKVYT GTRNTIF +FD+ITKS+PE++LI KNHRKKGRNN+G+IT       HKRRYR IDFKR+KHN +G V++IEYDPNRNARIAL+HY+NG+K YIICPDSL++GNKI+SGP+APIEIGNALPLE IPLGT+VHNIELS+NKGGQIVRAAGT+ARILAKE++YVT+RLPSKEIRL+HK+CYATIG+VSN+DHNNIKLGKAGRKRWLG+RPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGK+ LGVKTRKK KYSDIYIVRSR
Sbjct:    1 MTIRICKVYTIGTRNTIFPAFDDITKSQPERNLIAKNHRKKGRNNKGIITIRHHGGGHKRRYRTIDFKRRKHNRVGYVYSIEYDPNRNARIALVHYDNGEKNYIICPDSLKIGNKILSGPDAPIEIGNALPLENIPLGTSVHNIELSFNKGGQIVRAAGTAARILAKENNYVTLRLPSKEIRLIHKSCYATIGTVSNKDHNNIKLGKAGRKRWLGVRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKSTLGVKTRKKAKYSDIYIVRSR 274          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: A0A8F0JXT5_9PHAE (Ribosomal protein L2 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXT5_9PHAE)

HSP 1 Score: 476 bits (1226), Expect = 9.110e-169
Identity = 229/274 (83.58%), Postives = 250/274 (91.24%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSR 822
            M IRICKVYT GTRNT+FSSF +ITK+KPEK LI +NHRKKGRNNQGLIT   X   HKR+YR IDFKRKKHNI+G V AIEYDPNRN+RIALIHY NG+K YI+CPDSL++GN I+SGP  P+EIGNALPLE IPLGT+VHNIELSYNKGGQ+VRAAGT AR+LAKE++YVT+RLPSKEIRL+HK+CYATIG VSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRA IGRPKAYTPWGKAALGVKTRKK KYSDIYIVRSR
Sbjct:    1 MAIRICKVYTVGTRNTVFSSFSDITKNKPEKQLIRRNHRKKGRNNQGLITTRHXGGGHKRQYRQIDFKRKKHNIIGHVVAIEYDPNRNSRIALIHYANGEKNYILCPDSLKIGNTIVSGPTVPLEIGNALPLENIPLGTSVHNIELSYNKGGQVVRAAGTFARVLAKENNYVTLRLPSKEIRLIHKSCYATIGIVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRAKIGRPKAYTPWGKAALGVKTRKKSKYSDIYIVRSR 274          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: D1GJS9_FUCVE (50S ribosomal protein L2, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJS9_FUCVE)

HSP 1 Score: 475 bits (1223), Expect = 2.610e-168
Identity = 238/274 (86.86%), Postives = 254/274 (92.70%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSR 822
            M IRICKVYT GT NTIFSSF+EITKSKPEK LI KNHRKKGRN      XXXXXXXHKRRYRMIDFKRKKHNI+G V +IEYDPNR  RIALI+YENGDK YIICPDSL++GN+I+SGPNAP++IGNALPLE IPLGT+VHNIELSYNKGGQIVRAAGTSARILAKE++YVT+RLPSKEIRL+HK+CYATIG VSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEG ATIGRPKAYTPWGK ALGVKTRKKEKYSDIYIVRSR
Sbjct:    1 MAIRICKVYTVGTXNTIFSSFNEITKSKPEKKLISKNHRKKGRNXXXXXXXXXXXXXHKRRYRMIDFKRKKHNIVGYVHSIEYDPNRTTRIALIYYENGDKNYIICPDSLKIGNRILSGPNAPLDIGNALPLENIPLGTSVHNIELSYNKGGQIVRAAGTSARILAKENNYVTVRLPSKEIRLIHKSCYATIGIVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGHATIGRPKAYTPWGKPALGVKTRKKEKYSDIYIVRSR 274          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: A0A2I4Q342_9PHAE (50S ribosomal protein L2, chloroplastic n=2 Tax=Eukaryota TaxID=2759 RepID=A0A2I4Q342_9PHAE)

HSP 1 Score: 458 bits (1178), Expect = 1.870e-161
Identity = 221/274 (80.66%), Postives = 245/274 (89.42%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSR 822
            M IR CKVYT GTRNTI SSF EITK   EK L  KNHRKKGRNNQGLIT       HK+ YR+IDFKR+KHNI+G V +IEYDPNRNARIALI+Y +G K+YIICP+ +R+G++IMSGP AP+EIGNALPL+KIPLGT+VHNIELSYNKGGQIVRAAGT ARILAKE+DYVT+RLPSKEIRLVH+ CYATIG VSNRD+NNI+LGKAGRKRWLG+RPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGK ALGVKTRKKE+YSDI+IVRSR
Sbjct:    1 MAIRFCKVYTPGTRNTILSSFKEITKPSSEKKLTKKNHRKKGRNNQGLITSRHHGGGHKKLYRLIDFKRRKHNIVGFVASIEYDPNRNARIALINYRDGQKSYIICPEEVRIGSRIMSGPTAPLEIGNALPLDKIPLGTSVHNIELSYNKGGQIVRAAGTFARILAKENDYVTLRLPSKEIRLVHRTCYATIGIVSNRDNNNIRLGKAGRKRWLGVRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKPALGVKTRKKERYSDIFIVRSR 274          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: A0A8E5F969_9PHAE (Ribosomal protein L2 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5F969_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 4.930e-147
Identity = 206/274 (75.18%), Postives = 236/274 (86.13%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSR 822
            MTI IC+ YT+G +NT FS+   I KSKPEK+LI KNHRKKGRNN+G+IT       HKR+YR+IDFKRKKHNI G V +IEYDPNRNA+IALIHY++G K YI+CP  L V + I SGPN PI IGNALPLE IPLGTA+HN+ELSYNKGGQIVRAAGTSA+ILAKE++YVT+RLPSKE+R+V+K+CYATIG V NRDHN IKL KAG+ RWLGIRPTVRGSVMNPCDHPHGGGEGRA IGRPKAYTPWGK+ALGVKTRK +KYS+I+IVR R
Sbjct:    1 MTINICETYTSGIKNTKFSN---IFKSKPEKTLIKKNHRKKGRNNRGVITSHHRGGGHKRQYRLIDFKRKKHNISGYVSSIEYDPNRNAQIALIHYKDGVKMYILCPQDLEVNDIICSGPNVPIAIGNALPLEMIPLGTAIHNLELSYNKGGQIVRAAGTSAKILAKENNYVTVRLPSKEVRVVYKSCYATIGKVGNRDHNKIKLRKAGQNRWLGIRPTVRGSVMNPCDHPHGGGEGRAKIGRPKAYTPWGKSALGVKTRKIQKYSNIFIVRPR 271          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: A0A7S6U9X8_9STRA (50S ribosomal protein L2, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9X8_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 2.880e-142
Identity = 203/274 (74.09%), Postives = 228/274 (83.21%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSR 822
            M IRICKVYT GTRNTI SSF++ITK+ PEK L  KNHRKKGRNNQG+IT       HKR+YR IDFKR K+NI G V AIEYDPNR++ IALI+Y +G+K YIICPDSL+ G+ I+SG N PI IGNALPLE IPLGT +HNIE+SY KGGQIVRAAGT ARILAKE +YVT++LPSKEIR+++K  YATIG VSN+D  +I+LGKAGRKRWLG RPTVRGSVMNPCDHPHGGGEGRA IGR K YTPWGK  LG KTRKK KYSD YIVRSR
Sbjct:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSR 274          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: A0A8E5XRP5_9PHAE (50S ribosomal protein L2, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRP5_9PHAE)

HSP 1 Score: 409 bits (1052), Expect = 2.980e-142
Identity = 205/275 (74.55%), Postives = 228/275 (82.91%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSRT 825
            MTIRICKV TAGTRN I SSF ++TK KPEK LI  NHRKKGRNNQGLIT       HKR+YR IDFKR+K NILG V AIEYDPNRNARIALIHY +G+K+YIICPD LR+G  + +GP+A +++GNALPLE I LGT VHNIEL  NKGGQIVRAAGTSARILA+E +YVT+RLPSKEIR ++K CYATIG V N+D    +LGKAG  RW GIRPTVRGSVMNPCDHPHGGGEGRA IGRPKAYT WGK ALGVKTRK+EKYS+ YIVR RT
Sbjct:    1 MTIRICKVSTAGTRNKIISSFKDLTKKKPEKRLIKVNHRKKGRNNQGLITVRHHGGGHKRKYRTIDFKRRKRNILGKVVAIEYDPNRNARIALIHYLDGEKSYIICPDKLRIGEMVSAGPHAALKVGNALPLENILLGTFVHNIELFPNKGGQIVRAAGTSARILAREGNYVTLRLPSKEIRAINKCCYATIGIVGNKDSFLTRLGKAGATRWRGIRPTVRGSVMNPCDHPHGGGEGRARIGRPKAYTRWGKPALGVKTRKREKYSNPYIVRRRT 275          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: B7T1Y1_VAULI (50S ribosomal protein L2, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Y1_VAULI)

HSP 1 Score: 394 bits (1011), Expect = 5.000e-136
Identity = 193/274 (70.44%), Postives = 221/274 (80.66%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSR 822
            M I++CK  T GTRN++   FDEITK+KPEK+LI K HRKKGRNN G IT       HKR YR IDFKR K NI G + +IEYDPNRN +IAL+HYE+G+K YI+CPD L VG+ I SG N   +IGN+LPL  IPLGT +HNIELS NKGGQIVRAAG+ ARILAK+  Y+T+RLPSKEIRL+  +CYATIG +SNRD  N+ LGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRA IGR K YTPWGK+ALG KTRKK KYSDI+I+RSR
Sbjct:    1 MLIQVCKANTPGTRNSVLLKFDEITKNKPEKTLIKKLHRKKGRNNNGRITIRHRGGGHKRLYRTIDFKRNKLNIKGKIHSIEYDPNRNTKIALVHYEDGEKRYILCPDKLIVGSYIESGENIKSQIGNSLPLAYIPLGTFIHNIELSPNKGGQIVRAAGSFARILAKDDKYITLRLPSKEIRLIQSSCYATIGIISNRDAANVVLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRAPIGRVKPYTPWGKSALGTKTRKKNKYSDIFILRSR 274          
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Match: A0A120HYG0_9PHAE (Ribosomal protein L2 n=1 Tax=Sargassum thunbergii TaxID=127542 RepID=A0A120HYG0_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 8.160e-136
Identity = 186/235 (79.15%), Postives = 216/235 (91.91%), Query Frame = 1
Query:    1 MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLITXXXXXXXHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGDKTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNKGGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGG 705
            MTIRICKVYT GTRNTIF +FD+ITKS+PE++LIVKNHRKKGRNN+G IT       HKRRYR IDFKR+K + +G V++IEYDPNRNARIAL+HY+NG+K YIICPDSL++GNKI+SGP+APIEIGNALPLE IPLGT+VHN+ELS+NKGGQ+VRAAGT+ARILAKE++YVT+RLPSKEIRL+HK+CYATIG+VSN+DHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDH   GG
Sbjct:    1 MTIRICKVYTIGTRNTIFPAFDDITKSQPERNLIVKNHRKKGRNNKGRITIRHHGGGHKRRYRTIDFKRRKQDRVGYVYSIEYDPNRNARIALVHYDNGEKNYIICPDSLKIGNKILSGPDAPIEIGNALPLENIPLGTSVHNVELSFNKGGQMVRAAGTAARILAKENNYVTLRLPSKEIRLIHKSCYATIGAVSNKDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHHMEGG 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J749_ECTSI1.440e-18189.4550S ribosomal protein L2, chloroplastic n=39 Tax=P... [more]
A0A141BSN8_9PHAE6.700e-17182.8550S ribosomal protein L2, chloroplastic n=13 Tax=S... [more]
A0A8F0JXT5_9PHAE9.110e-16983.58Ribosomal protein L2 n=1 Tax=Protohalopteris sp. T... [more]
D1GJS9_FUCVE2.610e-16886.8650S ribosomal protein L2, chloroplastic n=3 Tax=Fu... [more]
A0A2I4Q342_9PHAE1.870e-16180.6650S ribosomal protein L2, chloroplastic n=2 Tax=Eu... [more]
A0A8E5F969_9PHAE4.930e-14775.18Ribosomal protein L2 n=1 Tax=Phaeophyceae sp. TaxI... [more]
A0A7S6U9X8_9STRA2.880e-14274.0950S ribosomal protein L2, chloroplastic n=1 Tax=Sc... [more]
A0A8E5XRP5_9PHAE2.980e-14274.5550S ribosomal protein L2, chloroplastic n=1 Tax=Is... [more]
B7T1Y1_VAULI5.000e-13670.4450S ribosomal protein L2, chloroplastic n=1 Tax=Va... [more]
A0A120HYG0_9PHAE8.160e-13679.15Ribosomal protein L2 n=1 Tax=Sargassum thunbergii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:46285..47112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score515.0
Seed ortholog evalue2.2e-143
Seed eggNOG ortholog2880.D1J749
Preferred namerpl2
KEGG koko:K02886,ko:K02965
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000027,GO:0000313,GO:0000315,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0090@1,KOG0438@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size828
Cds size828
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.533383-CDS-P-fluviatile_contig89:46284..471121622817299.533383-CDS-P-fluviatile_contig89:46284..47112Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 46285..47112 +
1693571984.6479867-CDS-P-fluviatile_contig89:46284..471121693571984.6479867-CDS-P-fluviatile_contig89:46284..47112Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 46285..47112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14961.1prot_P-fluviatile_contig89.14961.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 46285..47112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14961.1

>prot_P-fluviatile_contig89.14961.1 ID=prot_P-fluviatile_contig89.14961.1|Name=mRNA_P-fluviatile_contig89.14961.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=276bp
MTIRICKVYTAGTRNTIFSSFDEITKSKPEKSLIVKNHRKKGRNNQGLIT
TRHHGGGHKRRYRMIDFKRKKHNILGLVFAIEYDPNRNARIALIHYENGD
KTYIICPDSLRVGNKIMSGPNAPIEIGNALPLEKIPLGTAVHNIELSYNK
GGQIVRAAGTSARILAKESDYVTIRLPSKEIRLVHKNCYATIGSVSNRDH
NNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPW
GKAALGVKTRKKEKYSDIYIVRSRT*
back to top

mRNA from alignment at P-fluviatile_contig89:46285..47112+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14961.1 ID=mRNA_P-fluviatile_contig89.14961.1|Name=mRNA_P-fluviatile_contig89.14961.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=828bp|location=Sequence derived from alignment at P-fluviatile_contig89:46285..47112+ (Porterinema fluviatile SAG_2381)
ATGACTATTCGTATTTGTAAAGTTTATACTGCTGGTACAAGAAATACTAT TTTTTCGTCTTTTGATGAGATTACTAAATCAAAACCAGAAAAAAGCTTAA TTGTTAAAAACCATCGAAAAAAAGGTCGTAATAATCAAGGTTTAATTACA ACACGTCACCACGGTGGTGGCCATAAAAGGCGATATCGTATGATAGATTT CAAACGTAAAAAACATAACATTCTTGGTCTAGTCTTTGCTATAGAATACG ATCCAAATCGTAATGCCAGAATTGCATTAATACATTACGAAAATGGTGAT AAAACTTATATAATTTGTCCAGACTCTTTAAGGGTAGGCAATAAAATTAT GTCAGGTCCAAATGCCCCTATTGAAATTGGAAATGCTTTACCTTTAGAAA AAATACCTTTAGGTACAGCTGTACATAATATAGAATTATCTTATAATAAA GGGGGCCAAATCGTTAGAGCAGCAGGAACTTCTGCTCGTATTCTGGCAAA AGAAAGCGACTATGTAACAATCCGTCTACCATCTAAGGAGATTAGACTTG TTCATAAAAATTGTTATGCGACAATTGGTAGTGTTAGCAATAGAGACCAT AATAACATTAAATTAGGAAAAGCAGGTCGTAAGCGTTGGCTTGGTATTAG ACCAACAGTACGTGGTTCAGTAATGAACCCTTGTGATCATCCGCATGGTG GTGGTGAAGGGCGTGCAACAATCGGTCGACCAAAGGCTTATACACCTTGG GGTAAAGCAGCACTGGGAGTTAAAACAAGAAAAAAAGAAAAGTATAGCGA TATCTATATAGTTCGTTCTAGAACTTAA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig89:46285..47112+

>mRNA_P-fluviatile_contig89.14961.1 ID=mRNA_P-fluviatile_contig89.14961.1|Name=mRNA_P-fluviatile_contig89.14961.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1656bp|location=Sequence derived from alignment at P-fluviatile_contig89:46285..47112+ (Porterinema fluviatile SAG_2381)
ATGACTATTCGTATTTGTAAAGTTTATACTGCTGGTACAAGAAATACTAT
TTTTTCGTCTTTTGATGAGATTACTAAATCAAAACCAGAAAAAAGCTTAA
TTGTTAAAAACCATCGAAAAAAAGGTCGTAATAATCAAGGTTTAATTACA
ACACGTCACCACGGTGGTGGCCATAAAAGGCGATATCGTATGATAGATTT
CAAACGTAAAAAACATAACATTCTTGGTCTAGTCTTTGCTATAGAATACG
ATCCAAATCGTAATGCCAGAATTGCATTAATACATTACGAAAATGGTGAT
AAAACTTATATAATTTGTCCAGACTCTTTAAGGGTAGGCAATAAAATTAT
GTCAGGTCCAAATGCCCCTATTGAAATTGGAAATGCTTTACCTTTAGAAA
AAATACCTTTAGGTACAGCTGTACATAATATAGAATTATCTTATAATAAA
GGGGGCCAAATCGTTAGAGCAGCAGGAACTTCTGCTCGTATTCTGGCAAA
AGAAAGCGACTATGTAACAATCCGTCTACCATCTAAGGAGATTAGACTTG
TTCATAAAAATTGTTATGCGACAATTGGTAGTGTTAGCAATAGAGACCAT
AATAACATTAAATTAGGAAAAGCAGGTCGTAAGCGTTGGCTTGGTATTAG
ACCAACAGTACGTGGTTCAGTAATGAACCCTTGTGATCATCCGCATGGTG
GTGGTGAAGGGCGTGCAACAATCGGTCGACCAAAGGCTTATACACCTTGG
GGTAAAGCAGCACTGGGAGTTAAAACAAGAAAAAAAGAAAAGTATAGCGA
TATCTATATAGTTCGTTCTAGAACTTAAATGACTATTCGTATTTGTAAAG
TTTATACTGCTGGTACAAGAAATACTATTTTTTCGTCTTTTGATGAGATT
ACTAAATCAAAACCAGAAAAAAGCTTAATTGTTAAAAACCATCGAAAAAA
AGGTCGTAATAATCAAGGTTTAATTACAACACGTCACCACGGTGGTGGCC
ATAAAAGGCGATATCGTATGATAGATTTCAAACGTAAAAAACATAACATT
CTTGGTCTAGTCTTTGCTATAGAATACGATCCAAATCGTAATGCCAGAAT
TGCATTAATACATTACGAAAATGGTGATAAAACTTATATAATTTGTCCAG
ACTCTTTAAGGGTAGGCAATAAAATTATGTCAGGTCCAAATGCCCCTATT
GAAATTGGAAATGCTTTACCTTTAGAAAAAATACCTTTAGGTACAGCTGT
ACATAATATAGAATTATCTTATAATAAAGGGGGCCAAATCGTTAGAGCAG
CAGGAACTTCTGCTCGTATTCTGGCAAAAGAAAGCGACTATGTAACAATC
CGTCTACCATCTAAGGAGATTAGACTTGTTCATAAAAATTGTTATGCGAC
AATTGGTAGTGTTAGCAATAGAGACCATAATAACATTAAATTAGGAAAAG
CAGGTCGTAAGCGTTGGCTTGGTATTAGACCAACAGTACGTGGTTCAGTA
ATGAACCCTTGTGATCATCCGCATGGTGGTGGTGAAGGGCGTGCAACAAT
CGGTCGACCAAAGGCTTATACACCTTGGGGTAAAGCAGCACTGGGAGTTA
AAACAAGAAAAAAAGAAAAGTATAGCGATATCTATATAGTTCGTTCTAGA
ACTTAA
back to top