mRNA_P-fluviatile_contig83.14851.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig83.14851.1
Unique NamemRNA_P-fluviatile_contig83.14851.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig83.14851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig83contigP-fluviatile_contig83:258410..258770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.7092829-CDS-P-fluviatile_contig83:258409..2587211622817283.7092829-CDS-P-fluviatile_contig83:258409..258721Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 258410..258721 +
1693571934.3893306-CDS-P-fluviatile_contig83:258409..2587211693571934.3893306-CDS-P-fluviatile_contig83:258409..258721Porterinema fluviatile SAG_2381CDSP-fluviatile_contig83 258410..258721 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.7197697-UTR-P-fluviatile_contig83:258721..2587701622817283.7197697-UTR-P-fluviatile_contig83:258721..258770Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 258722..258770 +
1693571934.401751-UTR-P-fluviatile_contig83:258721..2587701693571934.401751-UTR-P-fluviatile_contig83:258721..258770Porterinema fluviatile SAG_2381UTRP-fluviatile_contig83 258722..258770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig83.14851.1prot_P-fluviatile_contig83.14851.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig83 258410..258721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig83.14851.1

>prot_P-fluviatile_contig83.14851.1 ID=prot_P-fluviatile_contig83.14851.1|Name=mRNA_P-fluviatile_contig83.14851.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
MTISASSPIGTTEPRICIISLSLVGLDTGELTLYQLPWPNLSSSCPCFVT
LSFGWPQARSSPQDQTVTPFVVLALIDIATPAPRWGQTLTFSFSSLKHYL
SEY*
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mRNA from alignment at P-fluviatile_contig83:258410..258770+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig83.14851.1 ID=mRNA_P-fluviatile_contig83.14851.1|Name=mRNA_P-fluviatile_contig83.14851.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=361bp|location=Sequence derived from alignment at P-fluviatile_contig83:258410..258770+ (Porterinema fluviatile SAG_2381)
ATGACAATCTCAGCTTCAAGTCCTATCGGTACGACCGAACCTCGTATCTG
CATCATATCCTTGTCCCTGGTTGGGTTGGACACCGGCGAGCTTACTCTAT
ACCAACTGCCTTGGCCCAACTTAAGCTCATCCTGTCCTTGTTTCGTAACG
CTGTCCTTCGGTTGGCCACAGGCGAGGTCATCTCCGCAAGACCAAACCGT
AACTCCTTTCGTAGTCCTGGCGCTCATTGACATAGCTACGCCTGCCCCAA
GGTGGGGACAAACTTTGACATTCTCATTTTCCAGCCTCAAGCATTACTTG
AGCGAATACTAGCCCTCACCAGGACTTTCATCCCTACCACCATGCCTAGA
TTGGATACGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig83:258410..258770+

>mRNA_P-fluviatile_contig83.14851.1 ID=mRNA_P-fluviatile_contig83.14851.1|Name=mRNA_P-fluviatile_contig83.14851.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig83:258410..258770+ (Porterinema fluviatile SAG_2381)
ATGACAATCTCAGCTTCAAGTCCTATCGGTACGACCGAACCTCGTATCTG
CATCATATCCTTGTCCCTGGTTGGGTTGGACACCGGCGAGCTTACTCTAT
ACCAACTGCCTTGGCCCAACTTAAGCTCATCCTGTCCTTGTTTCGTAACG
CTGTCCTTCGGTTGGCCACAGGCGAGGTCATCTCCGCAAGACCAAACCGT
AACTCCTTTCGTAGTCCTGGCGCTCATTGACATAGCTACGCCTGCCCCAA
GGTGGGGACAAACTTTGACATTCTCATTTTCCAGCCTCAAGCATTACTTG
AGCGAATACTAGATGACAATCTCAGCTTCAAGTCCTATCGGTACGACCGA
ACCTCGTATCTGCATCATATCCTTGTCCCTGGTTGGGTTGGACACCGGCG
AGCTTACTCTATACCAACTGCCTTGGCCCAACTTAAGCTCATCCTGTCCT
TGTTTCGTAACGCTGTCCTTCGGTTGGCCACAGGCGAGGTCATCTCCGCA
AGACCAAACCGTAACTCCTTTCGTAGTCCTGGCGCTCATTGACATAGCTA
CGCCTGCCCCAAGGTGGGGACAAACTTTGACATTCTCATTTTCCAGCCTC
AAGCATTACTTGAGCGAATACTAG
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