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Homology
BLAST of mRNA_P-fluviatile_contig81.14777.1 vs. uniprot
Match: A0A126X2D5_9PHAE (Putative LOV domain-containing protein n=1 Tax=Scytosiphon dotyi TaxID=180438 RepID=A0A126X2D5_9PHAE) HSP 1 Score: 178 bits (451), Expect = 5.690e-47 Identity = 136/277 (49.10%), Postives = 159/277 (57.40%), Query Frame = 2
Query: 191 SKRSAAEMSW---EAPLPPIFGNANQAEGVDFKGIDLDDVFSGVFFSPDGELLDIPSDSDESFNLTLSSASISEGTNQPQFAQFAVLRGGDNSGSDSTSGGGXGVGALGGMMNPVRGSSHQLQDLLMMGTTSEGHV--GNMDTDEGAVAGIAGLSGPPLPASAVPGFPLEQGTEAAAAAAXXXXXXXXEQARIAQQMAVAKAEEAVRAAAAHAQAQRSGSSLEGGVGAAPGAAAAAENSQPAGGTGSLVGGLPLPTGGILGPLAPHGVLPVPTTTPT 1006
S + E+ W +APLPPIFGNAN G +FKGI+LDDVFSGVFFSP+G+LLDIPSD D+S NLTLSSASISEG + PQFAQFAVLRGGD G G A ++NP R SSHQLQDLL G V G++ D XX XXXXX QAR AQ MAV+KAE+AV+AA A+AQAQ + +G + G+ G G+ GGL LPTGGI+GPLAPHG LP P T
Sbjct: 25 SGSAGGEVPWATGDAPLPPIFGNANAEAGDEFKGINLDDVFSGVFFSPEGDLLDIPSDGDDSLNLTLSSASISEGASHPQFAQFAVLRGGDE--------GAAGADAEAALLNPARDSSHQLQDLLGAGAAGGSSVVGGSVTMDXXXXXXXXXXXX------------------------XXDXXXXXXQARAAQDMAVSKAEQAVKAAQAYAQAQ-----MRTPLGGSGGS-----------GVGNTAGGLTLPTGGIVGPLAPHGALPAPAAAAT 253
BLAST of mRNA_P-fluviatile_contig81.14777.1 vs. uniprot
Match: A0A6H5L7C4_9PHAE (BZIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7C4_9PHAE) HSP 1 Score: 127 bits (320), Expect = 8.640e-29 Identity = 109/219 (49.77%), Postives = 127/219 (57.99%), Query Frame = 2
Query: 221 EAPLPPIFGNANQAEGVDFKGIDL--DDVFSGVFFSPDGELLDIPSDSDESFNLTLSSASISEGTNQPQFAQFAVLRGGDNSGSDSTSGGGX-----------------GVGALGGMMNPVRGSSHQLQDLLMMGTTSEGHVGNMDTDEGAVAGIAGLSGPPL------------PASAVPGFPLEQGTEAAAAAAXXXXXXXXEQARIAQQMAVAKAE 784
+APLPPIFGNAN G +FKG+DL DDVFSGVFFSPDG+LLDIPSD DES NLTLSS SIS+GT FAQFAVL G + G + X VG G M R SSH+LQDLL + +G + MDTD+ A A AG+ GP + P A G GT+ A XXXXXXXXEQA+ AQQ+A +KAE
Sbjct: 28 DAPLPPIFGNANAEPGHEFKGMDLNLDDVFSGVFFSPDGDLLDIPSDGDESLNLTLSSTSISDGTTHTPFAQFAVLSGTADDGDAAXXXXXXXXXXXXXXXXXXXXXXXAVGEGAGPMPSFRRSSHELQDLLNLPGGGQGSM--MDTDDPAAAAAAGV-GPQIVGAAPGVVAGLSPQGAFLGGGAGVGTQEAXXXXXXXXXXXXEQAQXAQQLAASKAE 243
BLAST of mRNA_P-fluviatile_contig81.14777.1 vs. uniprot
Match: A0A126X308_SARHM (Putative LOV domain-containing protein n=2 Tax=Sargassum TaxID=3015 RepID=A0A126X308_SARHM) HSP 1 Score: 98.6 bits (244), Expect = 8.220e-19 Identity = 59/116 (50.86%), Postives = 73/116 (62.93%), Query Frame = 2
Query: 224 APLPPIFGNANQ---AEGVDFKGIDLDDVFSGVFFSPDGELLDIPSDSDESFNLTLSSASISEGTNQPQFAQFAVLRGGDNSGSDSTSGGGXGVGALGGMMNPVRGSSHQLQDLLM 562
AP PP+FGNAN +F+GI+LDD+FSGV F+PDGELLDIPSD DE+ N+TLS+ SISEG Q FAQFAV+ GD S+ + GSS Q QD+L+
Sbjct: 30 APSPPVFGNANANRTGSETNFRGINLDDIFSGVLFTPDGELLDIPSDDDENLNITLSTTSISEGRAQTPFAQFAVV--GDTFASEES------------------GSSGQFQDVLI 125
BLAST of mRNA_P-fluviatile_contig81.14777.1 vs. uniprot
Match: A0A126WV07_9PHAE (Putative LOV domain-containing protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A126WV07_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 3.300e-13 Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 2
Query: 221 EAPLPPIFGNAN-QAEGVD--FKGIDLDDVFSGVFFSPDGELLDIPSDSDES-FNLTLSSASISEGTN----------------QPQFAQFAVL 442
E P PP+FGNAN Q D FKG++LDD+FSGVFFSP+G+LL +PSD +++ FNLTLSS+ EG QPQFAQ+AVL
Sbjct: 18 EGPSPPVFGNANGQTTSGDMMFKGMNLDDIFSGVFFSPEGDLLTLPSDEEDALFNLTLSSSGGGEGAGSVAKMDGSAEDGDMGQQPQFAQYAVL 111
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 120.2 |
| Seed ortholog evalue | 1.8e-24 |
| Seed eggNOG ortholog | 2880.D7FMH8 |
| EggNOG free text desc. | PAS domain |
| EggNOG OGs | 2BEDG@1,2S14J@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1103 |
| Cds size | 942 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817274.171337-CDS-P-fluviatile_contig81:238735..239020 | 1622817274.171337-CDS-P-fluviatile_contig81:238735..239020 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig81 238736..239020 - |
| 1693571874.3196774-CDS-P-fluviatile_contig81:238735..239020 | 1693571874.3196774-CDS-P-fluviatile_contig81:238735..239020 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig81 238736..239020 - |
| 1622817274.1850572-CDS-P-fluviatile_contig81:239315..239852 | 1622817274.1850572-CDS-P-fluviatile_contig81:239315..239852 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig81 239316..239852 - |
| 1693571874.7794821-CDS-P-fluviatile_contig81:239315..239852 | 1693571874.7794821-CDS-P-fluviatile_contig81:239315..239852 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig81 239316..239852 - |
| 1622817274.2004123-CDS-P-fluviatile_contig81:242168..242288 | 1622817274.2004123-CDS-P-fluviatile_contig81:242168..242288 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig81 242169..242288 - |
| 1693571875.9027193-CDS-P-fluviatile_contig81:242168..242288 | 1693571875.9027193-CDS-P-fluviatile_contig81:242168..242288 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig81 242169..242288 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817274.2147908-UTR-P-fluviatile_contig81:242288..242448 | 1622817274.2147908-UTR-P-fluviatile_contig81:242288..242448 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig81 242289..242448 - |
| 1693571876.0727813-UTR-P-fluviatile_contig81:242288..242448 | 1693571876.0727813-UTR-P-fluviatile_contig81:242288..242448 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig81 242289..242448 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig81.14777.1 >prot_P-fluviatile_contig81.14777.1 ID=prot_P-fluviatile_contig81.14777.1|Name=mRNA_P-fluviatile_contig81.14777.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=314bp
MEATQQQQQDSKRSAAEMSWEAPLPPIFGNANQAEGVDFKGIDLDDVFSG VFFSPDGELLDIPSDSDESFNLTLSSASISEGTNQPQFAQFAVLRGGDNS GSDSTSGGGGGVGALGGMMNPVRGSSHQLQDLLMMGTTSEGHVGNMDTDE GAVAGIAGLSGPPLPASAVPGFPLEQGTEAAAAAAAAEADAAAEQARIAQ QMAVAKAEEAVRAAAAHAQAQRSGSSLEGGVGAAPGAAAAAENSQPAGGT GSLVGGLPLPTGGILGPLAPHGVLPVPTTTPTRPVPRPAAGLPPQGAAAA AAAAAAAAGGGLGS back to topmRNA from alignment at P-fluviatile_contig81:238736..242448- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig81.14777.1 ID=mRNA_P-fluviatile_contig81.14777.1|Name=mRNA_P-fluviatile_contig81.14777.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3713bp|location=Sequence derived from alignment at P-fluviatile_contig81:238736..242448- (Porterinema fluviatile SAG_2381) AGCGCCTAGCTCGGGTCGGGTCGGCTAGTCGCCGCCAACGCCAGCGGCAT
CCAATATAGGTCCTGCTTGTGTGACTCTGGCACTCTAGGTTGGTGTATAC
TGTTCATAGGGAGGGAGGTGGCGCAGAGCTCTCCTTTGGGTGATACGTGG
GAAACGGAGCATGGAAGCGACGCAACAACAGCAACAGGATTCCAAGCGCA
GCGCGGCAGAGATGTCGTGGGAAGCACCGCTGCCGCCAATCTTCGGTAAC
GCAAACCAGGCGGAAGGCGTCGATTTCAAGGTGTGTGTTCGTTAGCTCTC
TTCGGTGATTGCACTTTGTTTGTGCGTGCCCGTGTGCGTGTTCCCGAACC
CGAGTGTTTGCGACAGGGGAGAGAGAGGTGGAATGCGAGACTGTGGACAC
AGCGCGCGACTCCGTTGCCGCGTCGTGGGCAGACACGAACGCTTATTGAG
GAAAACTGATGACTCGCTTGCAGCTGATTTTGGCCCTGTTCGGCGTCGGC
GTGGATGGGTGGGGTTGCCATGGTAGGGGAGCTCACCCTTGTGCCCAGTT
GTATGTTCATGGCACACACACATGCGCGCTGTCCTTTGTTGCTCTTCCGT
CCATCTCCAAGATTGTCCGACTCTCACGCTCTCCTCCTGGTGCTCTTCCC
CATCCTGCATGCCCCTAAAATCAACAGCTATTGCTCGAGCTATCTCTAGC
TTCCCCGTTTCCTTACAGGAAGCTCCCAACGGGTGCACGCCTCTGTACGT
GAACCCCTCCTCGGATTGGTCGTTTGTGTGTGTGACTACACGCCCCGAAG
TGCACAGCAATTTTTTAAGCTCGCTTGTTTCTTTTCAAAAATGCTTCTCT
TTGTCTGTCCCTCTCTCGCGCGCCCGTTATCCCTAGAGCGATCCCTGCCG
CGAACCAATCGCACAAGCCGACGCCACAAGGGCACCACAACCTCTCAGCT
GCATTCACCCTGTAGTACAACACCGCCAAGCCATAGCGTTTGGGGAAGGT
CTACGGGAATTTTCTCGAGATTTTGCGGCAACATACCGCAAGATTGCAGC
GGGCTTGCTTGGGGGACCCTGAATGGGGGGAAGAGATTGAAATGCAGAGA
ATGCGTGCCCTCCCCCTGGTGCACGTGTGCTTGTGTTGTACGACAACAGC
AGTGATGGGCAACAACAAGTCTGGGAAGCCCCCAGTGGTCAGCCTGTCTG
CTGTTTGCTGGTCACGTCATGTGAGGGGAAGCGGAGACCAGCATAAGAAG
AGAAATTGGCATTTTTTTCGCGACGGCTGGCTGGTGTGGTCACGCTCAGC
ACACACAGCAGCGGCAGGCCGCGATAGAGAGAGGGGAGGTAGGGGAGCGC
GATTATGTGCTGGCGAGTTGAAGTTCAAGGGCTCAAGGTGGCTTGGACTG
CAGCATGTCCAAGACGAAAAGACAATGACGAACCGATTCGCATTTGAGTT
TGACCCACTGCTCTGCCACTTCTGCTGCTAAACAACCCGTGAGCGGACAG
ACACTGGCTCTTTCGGATCATGGACGGTACGTCACGCGGTGATGTCATTC
GTTGCCGTGATATGCCTGGAGGAAAGTGAAGAAATGCCTCGGAGTGTACG
CCGTGCCGAATACCCAACTCGGGACGGTAAAGCCCACTCCAGAGCCTTCT
TCCGTAGCCGTTTGCGAGCTTGGCGCACGCGCTCTTGGGAGTGGGAACAT
GACTCTTTCGGAGAAAGCCAAAAACGGCGGGGGAAAAAAGAATTTGACAA
AATGCACTGAAGAACTGACGAACGCACCGCCGCCGCAGCGCAAACGTTGA
AATAGCACACTTCTCGCTCGTGCGTCGGAGACAAGGTTTCTTTCCATACC
ATATTGTGGCCGTTATGTTGTCATGGAAGTACGGTATTAGGAATTTTCTC
CGCCTGATTTCGCTTTCACGACACGGCTCGCTACTTTCTGCCGCGCGAAA
AGCTGCGAACGCGTGTGCCTGTCTAGTCTCCTGCCCACTTCCGCTGTATG
CATGTGTATCGAGGGGCCAAGCGACTATTCTTCAATGTCCCCAGCTTTCT
TCGTAAACACTCCGCCACAGCATTCGCGGTAGCCTCCCGTATTCCGGCGA
AGAATTCCCGCTCACTCATTGTCGTTCTTTCCGTCTCGTGACCTTGCGAA
AGCGAACTTTTTGGCCAGCACCGAATTCCGCGCCACCTTTTCCCCCGTGC
TCCGACGGGCGCTGGCTGTGCGTGTCATCACCTGCATGCGCGCCGGGCTG
TCTCCGGGTGTATTAAGTCGTCCAACCCCCCTCGCTCCTGTAACGCACCC
CCCTCCCCGCCAACTGTTTTAGAAATTCTGCCTGCCGGCCTGTTCTCGCA
GCTCTGCACCCCGCTATGAATAGTGAAATCTGGATTGCCAGTAGCAGAGC
CCGTTCTCTTCCCGCTGCTACTGCTGTTCAATCCAACTTCGAACGATCGC
TTTGTTCAAGCAACTGCTGCCGTCTCTATTGCAGCGAAGTCCGTTCAAAC
CCGGCATCCCAGCCCCTGCACGAGAGGGCCTCAACCCGCACGCTTGCATC
TCTGCTGCACCCCCTCTCGTGACATCGGTTGACTGTCCTCCCGCAGGGCA
TCGACCTCGACGACGTTTTTTCGGGGGTGTTCTTCTCGCCCGATGGGGAG
CTCCTGGACATACCCTCGGACAGTGACGAGTCTTTCAACCTCACGCTGTC
CTCCGCGTCCATCAGCGAGGGCACAAACCAACCGCAATTCGCCCAGTTCG
CTGTGCTACGCGGCGGCGACAACAGCGGCAGCGACAGCACCAGCGGTGGC
GGTGGCGGCGTGGGTGCGTTAGGAGGGATGATGAACCCCGTTCGTGGGTC
TTCTCACCAGCTTCAGGACCTCCTGATGATGGGGACCACCTCCGAAGGCC
ATGTCGGCAACATGGACACCGACGAGGGGGCGGTGGCGGGGATAGCGGGT
TTGTCTGGGCCACCATTACCCGCTTCCGCCGTCCCCGGGTTCCCTTTGGA
GCAGGGCACGGAGGCGGCGGCGGCGGCGGCAGCGGCGGAGGCGGACGCGG
CCGCCGAGCAAGCGAGAATCGCGCAGCAGATGGCCGTTGCGAAGGCGGAG
GAGGCGGTGCGGGCCGCCGCGGCGCACGCGCAGGTCGGTTTCTGTACTTT
TCGTGTGCTGTGTTCGTTTATGGGGGTGACGCCATGTGGCCAGCGGAGGG
GGTGATATTTTGTACAGCAGTATTGGCGGCAGATGCAACTGCGGGGGGTG
GGCGTAGGCTCCCTTAAGTTGTATCGGCGGACACCACTGCAAACCAAACG
GTGTTGTAGGATGTTTTGCAAAGAACCCCCACGTCGTGTCTGGTTTCTCT
CTCGCAGCCCCTGTGGAGCTGAGCACCCAGGCTGCACTGACTCCGACGAC
CCCCTCCCCCCTCCCACCGCTCCGACAGGCACAGAGATCGGGCTCTTCGC
TCGAAGGCGGTGTCGGCGCGGCCCCAGGAGCAGCGGCGGCAGCAGAGAAC
TCTCAACCCGCGGGCGGCACTGGCTCGTTGGTGGGCGGGCTGCCGTTGCC
GACCGGCGGTATCCTCGGTCCACTCGCACCGCACGGGGTCTTGCCCGTCC
CGACGACGACGCCAACCAGGCCGGTCCCTAGACCGGCGGCGGGCTTGCCG
CCCCAGGGGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCCGCCGGCGG
TGGTTTGGGCAGC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig81:238736..242448- >mRNA_P-fluviatile_contig81.14777.1 ID=mRNA_P-fluviatile_contig81.14777.1|Name=mRNA_P-fluviatile_contig81.14777.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1884bp|location=Sequence derived from alignment at P-fluviatile_contig81:238736..242448- (Porterinema fluviatile SAG_2381) ATGGAAGCGACGCAACAACAGCAACAGGATTCCAAGCGCAGCGCGGCAGA GATGTCGTGGGAAGCACCGCTGCCGCCAATCTTCGGTAACGCAAACCAGG CGGAAGGCGTCGATTTCAAGATGGAAGCGACGCAACAACAGCAACAGGAT TCCAAGCGCAGCGCGGCAGAGATGTCGTGGGAAGCACCGCTGCCGCCAAT CTTCGGTAACGCAAACCAGGCGGAAGGCGTCGATTTCAAGGGCATCGACC TCGACGACGTTTTTTCGGGGGTGTTCTTCTCGCCCGATGGGGAGCTCCTG GACATACCCTCGGACAGTGACGAGTCTTTCAACCTCACGCTGTCCTCCGC GTCCATCAGCGAGGGCACAAACCAACCGCAATTCGCCCAGTTCGCTGTGC TACGCGGCGGCGACAACAGCGGCAGCGACAGCACCAGCGGTGGCGGTGGC GGCGTGGGTGCGTTAGGAGGGATGATGAACCCCGTTCGTGGGTCTTCTCA CCAGCTTCAGGACCTCCTGATGATGGGGACCACCTCCGAAGGCCATGTCG GCAACATGGACACCGACGAGGGGGCGGTGGCGGGGATAGCGGGTTTGTCT GGGCCACCATTACCCGCTTCCGCCGTCCCCGGGTTCCCTTTGGAGCAGGG CACGGAGGCGGCGGCGGCGGCGGCAGCGGCGGAGGCGGACGCGGCCGCCG AGCAAGCGAGAATCGCGCAGCAGATGGCCGTTGCGAAGGCGGAGGAGGCG GTGCGGGCCGCCGCGGCGCACGCGCAGGGCATCGACCTCGACGACGTTTT TTCGGGGGTGTTCTTCTCGCCCGATGGGGAGCTCCTGGACATACCCTCGG ACAGTGACGAGTCTTTCAACCTCACGCTGTCCTCCGCGTCCATCAGCGAG GGCACAAACCAACCGCAATTCGCCCAGTTCGCTGTGCTACGCGGCGGCGA CAACAGCGGCAGCGACAGCACCAGCGGTGGCGGTGGCGGCGTGGGTGCGT TAGGAGGGATGATGAACCCCGTTCGTGGGTCTTCTCACCAGCTTCAGGAC CTCCTGATGATGGGGACCACCTCCGAAGGCCATGTCGGCAACATGGACAC CGACGAGGGGGCGGTGGCGGGGATAGCGGGTTTGTCTGGGCCACCATTAC CCGCTTCCGCCGTCCCCGGGTTCCCTTTGGAGCAGGGCACGGAGGCGGCG GCGGCGGCGGCAGCGGCGGAGGCGGACGCGGCCGCCGAGCAAGCGAGAAT CGCGCAGCAGATGGCCGTTGCGAAGGCGGAGGAGGCGGTGCGGGCCGCCG CGGCGCACGCGCAGGCACAGAGATCGGGCTCTTCGCTCGAAGGCGGTGTC GGCGCGGCCCCAGGAGCAGCGGCGGCAGCAGAGAACTCTCAACCCGCGGG CGGCACTGGCTCGTTGGTGGGCGGGCTGCCGTTGCCGACCGGCGGTATCC TCGGTCCACTCGCACCGCACGGGGTCTTGCCCGTCCCGACGACGACGCCA ACCAGGCCGGTCCCTAGACCGGCGGCGGGCTTGCCGCCCCAGGGGGCTGC TGCTGCTGCTGCTGCTGCTGCTGCGGCCGCCGGCGGTGGTTTGGGCAGCG CACAGAGATCGGGCTCTTCGCTCGAAGGCGGTGTCGGCGCGGCCCCAGGA GCAGCGGCGGCAGCAGAGAACTCTCAACCCGCGGGCGGCACTGGCTCGTT GGTGGGCGGGCTGCCGTTGCCGACCGGCGGTATCCTCGGTCCACTCGCAC CGCACGGGGTCTTGCCCGTCCCGACGACGACGCCAACCAGGCCGGTCCCT AGACCGGCGGCGGGCTTGCCGCCCCAGGGGGCTGCTGCTGCTGCTGCTGC TGCTGCTGCGGCCGCCGGCGGTGGTTTGGGCAGC back to top
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