mRNA_P-fluviatile_contig12.1408.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1408.1
Unique NamemRNA_P-fluviatile_contig12.1408.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1408.1 vs. uniprot
Match: D8LDI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI2_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.590e-12
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MASDRQGDAGWTPPRAPAKGLQLSGSSPGSSRGKLRSEYQ 120
            MA+DRQG+ GWTPPRAPA   +LSGSSPGSSRGKLRSEYQ
Sbjct:    1 MAADRQGELGWTPPRAPAVSRRLSGSSPGSSRGKLRSEYQ 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDI2_ECTSI6.590e-1282.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1267113..1269520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_000500.1
Exons2
Model size698
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1408.1prot_P-fluviatile_contig12.1408.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1267113..1269467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.1608973-CDS-P-fluviatile_contig12:1267112..12672651622815505.1608973-CDS-P-fluviatile_contig12:1267112..1267265Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1267113..1267265 +
1693562077.8893306-CDS-P-fluviatile_contig12:1267112..12672651693562077.8893306-CDS-P-fluviatile_contig12:1267112..1267265Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1267113..1267265 +
1622815505.176303-CDS-P-fluviatile_contig12:1268975..12694671622815505.176303-CDS-P-fluviatile_contig12:1268975..1269467Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1268976..1269467 +
1693562077.89869-CDS-P-fluviatile_contig12:1268975..12694671693562077.89869-CDS-P-fluviatile_contig12:1268975..1269467Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1268976..1269467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.1896737-UTR-P-fluviatile_contig12:1269467..12695201622815505.1896737-UTR-P-fluviatile_contig12:1269467..1269520Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1269468..1269520 +
1693562077.908666-UTR-P-fluviatile_contig12:1269467..12695201693562077.908666-UTR-P-fluviatile_contig12:1269467..1269520Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1269468..1269520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1408.1

>prot_P-fluviatile_contig12.1408.1 ID=prot_P-fluviatile_contig12.1408.1|Name=mRNA_P-fluviatile_contig12.1408.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=215bp
MASDRQGDAGWTPPRAPAKGLQLSGSSPGSSRGKLRSEYQASSMSWTRAP
SARLGGMAVKKRRSGALKFTDRRPTAAAAAAATATEAWGSPTNPTAAGRG
EGSEAAPGGGAGSSSGWEPPPPPPLRKDGGHQTSLMDFCQDTRLAAVAAA
EGARTGATGGGSRICVVGTAGARQGGCAGGGSGGICENTRKRRIAATDPA
RKLRLCRSGAHGHL*
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mRNA from alignment at P-fluviatile_contig12:1267113..1269520+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1408.1 ID=mRNA_P-fluviatile_contig12.1408.1|Name=mRNA_P-fluviatile_contig12.1408.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2408bp|location=Sequence derived from alignment at P-fluviatile_contig12:1267113..1269520+ (Porterinema fluviatile SAG_2381)
ATGGCCTCCGATAGGCAGGGTGATGCGGGATGGACGCCCCCGAGAGCGCC
AGCCAAAGGTCTCCAGCTGTCCGGCTCGAGCCCCGGATCGTCGAGAGGGA
AGCTGCGATCGGAGTACCAGGCGAGTTCCATGTCGTGGACGAGAGCACCC
TCTGTCGCATCAGTTGGATTTGGATTTGAATCTCCATCCTAGGTAGACCG
GCATACACACCGGGCTCTGTCCTCTGTACTAGCTAGCTCCTTCCTTTCCT
ACTGTAGAGACTTGTCAGATATCCAATCGCCTGTGTGGCAGGAACTCTCG
TTTGGTTTTGTGCGCGGTGGGGCTCACGCTCGAATGGCGCCGCCTGCAGC
CACTTCCCCCGTAATAGTCCGCACGCGATTGCATAAAATCAAGATATCGC
TACCCGTTTTTATGGACTTGCGTTCACCAATTCGTGCGCCCCCCCTTTGT
TTTGGAGTTATTTGTAGGATAGCAAAGGATATCTGCTACGCCTTGTCGAA
AGTATCGCCGTGGATCTTGCGTCGAGGCAAGGCGAGACCACGGCGAGGGC
ACACATGAGCGTTAACACACACCCTCAACATCCGCCGAGGTCGACTGCGC
CCAAAATATGTTGAGTTCGAAACGTCACGGAAACAAGGCGAAAGTTTTCC
GGACAAACAAAAGTCTGCCTCTACCCACCTCTCCCATACACTGCCCAACA
CATGGGGCTCGCTGAAGGCCAGCGTTGCGTTCTTGGGATACGGATCTACC
AGTTGTGGGCGTCCGGTTGACTAGACTAACTTCCCTAATAGGAAAGTCTC
AGCGAACAGACACGAGTAGAGCGCGCCGGGTGCGGACGAATTAGACTGGG
TTTGCCGTTGCAAAGAAGGCGTTAGCCCGATTGGGCCTGTGAGTTTGATC
GGGTTTTTGGTGCAGGGCTGGTGGGCGTTCGCCAACGAATTGATGCGCAG
CTGTGGGTGTCTCGGGAGGCGTTTGCCGACGAATTCGCGCCCAAACGACG
TATTCCTCTCTCTAGACAGAGGGAAAGCGGACACGCGTACACAACCAAAC
CCATCGGCAGCCTGGTCGATCGCAAGTTTCTCCTTTCTACGAACGGACGC
CTTCGAGAGTTGCCGCAGCATCCAAATCCCAGACGTGGGTACCGCCGTCG
GGACGAACCGCGCGGCGGTAGGTAATGTCTTGATTGTGCTGCTGCGCCGA
ACTTCGTATTTCTTTGGAGAAGCATCTGAATTGTTTCCAAATCGAAAGAA
GACAAGTGGAAGCCTTTTCTGGACCCGACGTGAGAGAAATACAAAAAAAA
TGTTTAGAAGAGCAGCGGAATCGCCAGGCCCATCACCGATACGCCGTTCT
CACCCGGCGCCGGGGGCGGGAATGCTACACGTACGTCAATCTCGTGACCT
AGTGCTTGAGTGTCGCACGGTGTCAAAATCGGAGAAATCTTGCTTCCACC
TTGAATGTTCCCCAGCCGCCGTCGCAAAGCGGTCATGATGTTCGCTTTGT
GGTGGAGCCGGCCACTCTCTCTGTCCCCACCCGATCAGCTTAAGGCAAAA
TCTGACAAAGCGTAATCCTCTTTTTTCTTACCCCCGTCAAAGTCCGATCG
CTACCCCCGCCCTCCCTCCCGCTCTCTCTGCCTTTGCCTCTCTCTCATGC
CCACCCTTTCTCCCTATCGTTTTCCTTGTCCCCCTCTCCCTGCCCTCCTA
CGCCACGTCCTCACTCCTTCACCCCCCACCCTGTGTCTATCCGTTCGTCT
TTTTATCTATCTTTCTGCCTACCTTCCTCTCTCCTTGTCCCTGCCCCGTT
CTCCCCTTCTCCCTTCTGCCCCTCCCTCCCTCCCTCCCTCCCTACCTTCC
TGCCTGCCTTCAGGCCCGGCTAGGCGGGATGGCCGTCAAGAAACGCCGCT
CAGGGGCTCTCAAGTTCACTGACCGTCGACCCACCGCAGCCGCCGCAGCT
GCCGCCACCGCCACCGAAGCGTGGGGTTCCCCTACAAACCCAACAGCGGC
AGGCAGGGGGGAAGGAAGCGAGGCGGCGCCGGGCGGCGGGGCCGGATCAA
GCAGCGGTTGGGAGCCTCCGCCGCCGCCTCCGCTCCGAAAGGACGGCGGC
CACCAGACCTCTCTGATGGACTTTTGTCAAGACACGAGGCTGGCGGCGGT
GGCGGCGGCCGAGGGAGCGAGAACGGGAGCGACAGGGGGCGGGAGCAGGA
TTTGTGTTGTTGGTACCGCCGGCGCTAGACAGGGCGGGTGCGCCGGCGGC
GGGAGCGGCGGAATCTGCGAGAACACCCGAAAAAGAAGAATCGCGGCAAC
GGACCCGGCCAGAAAGTTGCGACTCTGCAGGAGTGGTGCACATGGACACC
TCTGAAGATTCCTTCGGAGGTAATCAGGCTCAAGAACTTCAGTGCGTGCA
GCAGCAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1267113..1269520+

>mRNA_P-fluviatile_contig12.1408.1 ID=mRNA_P-fluviatile_contig12.1408.1|Name=mRNA_P-fluviatile_contig12.1408.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1290bp|location=Sequence derived from alignment at P-fluviatile_contig12:1267113..1269520+ (Porterinema fluviatile SAG_2381)
ATGGCCTCCGATAGGCAGGGTGATGCGGGATGGACGCCCCCGAGAGCGCC
AGCCAAAGGTCTCCAGCTGTCCGGCTCGAGCCCCGGATCGTCGAGAGGGA
AGCTGCGATCGGAGTACCAGGCGAGTTCCATGTCGTGGACGAGAGCACCC
TCTATGGCCTCCGATAGGCAGGGTGATGCGGGATGGACGCCCCCGAGAGC
GCCAGCCAAAGGTCTCCAGCTGTCCGGCTCGAGCCCCGGATCGTCGAGAG
GGAAGCTGCGATCGGAGTACCAGGCGAGTTCCATGTCGTGGACGAGAGCA
CCCTCTGCCCGGCTAGGCGGGATGGCCGTCAAGAAACGCCGCTCAGGGGC
TCTCAAGTTCACTGACCGTCGACCCACCGCAGCCGCCGCAGCTGCCGCCA
CCGCCACCGAAGCGTGGGGTTCCCCTACAAACCCAACAGCGGCAGGCAGG
GGGGAAGGAAGCGAGGCGGCGCCGGGCGGCGGGGCCGGATCAAGCAGCGG
TTGGGAGCCTCCGCCGCCGCCTCCGCTCCGAAAGGACGGCGGCCACCAGA
CCTCTCTGATGGACTTTTGTCAAGACACGAGGCTGGCGGCGGTGGCGGCG
GCCGAGGGAGCGAGAACGGGAGCGACAGGGGGCGGGAGCAGGATTTGTGT
TGTTGGTACCGCCGGCGCTAGACAGGGCGGGTGCGCCGGCGGCGGGAGCG
GCGGAATCTGCGAGAACACCCGAAAAAGAAGAATCGCGGCAACGGACCCG
GCCAGAAAGTTGCGACTCTGCAGGAGTGGTGCACATGGACACCTCTGAGC
CCGGCTAGGCGGGATGGCCGTCAAGAAACGCCGCTCAGGGGCTCTCAAGT
TCACTGACCGTCGACCCACCGCAGCCGCCGCAGCTGCCGCCACCGCCACC
GAAGCGTGGGGTTCCCCTACAAACCCAACAGCGGCAGGCAGGGGGGAAGG
AAGCGAGGCGGCGCCGGGCGGCGGGGCCGGATCAAGCAGCGGTTGGGAGC
CTCCGCCGCCGCCTCCGCTCCGAAAGGACGGCGGCCACCAGACCTCTCTG
ATGGACTTTTGTCAAGACACGAGGCTGGCGGCGGTGGCGGCGGCCGAGGG
AGCGAGAACGGGAGCGACAGGGGGCGGGAGCAGGATTTGTGTTGTTGGTA
CCGCCGGCGCTAGACAGGGCGGGTGCGCCGGCGGCGGGAGCGGCGGAATC
TGCGAGAACACCCGAAAAAGAAGAATCGCGGCAACGGACCCGGCCAGAAA
GTTGCGACTCTGCAGGAGTGGTGCACATGGACACCTCTGA
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