mRNA_P-fluviatile_contig8.14604.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14604.1
Unique NamemRNA_P-fluviatile_contig8.14604.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14604.1 vs. uniprot
Match: A0A6H5JHE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE0_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.080e-23
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 RTIVSRSMPRKGGGHDDHPHLVFDTASSPFSKLGSALLVGGVVFGGIGVVIGAVAHQQYKGGESARE 201
            RTIV+RSMPR GGGHDDHPHLVFDTA  PF+K  + LLVGG+VF GIG+V+GAV HQ YK G   +E
Sbjct:   19 RTIVTRSMPRAGGGHDDHPHLVFDTAKEPFTKFSAGLLVGGLVFSGIGIVVGAVTHQNYKHGYWGKE 85
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BLAST of mRNA_P-fluviatile_contig8.14604.1 vs. uniprot
Match: D7FSH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH6_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.120e-21
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 RTIVSRSMPRKGGGHDDHPHLVFDTASSPFSKLGSALLVGGVVFGGIGVVIGAVAHQQYKGG 186
            RTIVSRSMPR GGGHDDHPHLVF+TA  PF+K  + L+VGG VF GIG+V+GA+ HQ YK G
Sbjct:    2 RTIVSRSMPRAGGGHDDHPHLVFETAKEPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHE0_9PHAE8.080e-2370.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSH6_ECTSI1.120e-2170.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3086354..3089032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003770.1
Exons2
Model size2320
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14604.1prot_P-fluviatile_contig8.14604.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3086375..3087207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817254.8046176-UTR-P-fluviatile_contig8:3086353..30863741622817254.8046176-UTR-P-fluviatile_contig8:3086353..3086374Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3086354..3086374 +
1693571741.8999825-UTR-P-fluviatile_contig8:3086353..30863741693571741.8999825-UTR-P-fluviatile_contig8:3086353..3086374Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3086354..3086374 +
1622817254.841381-UTR-P-fluviatile_contig8:3087207..30890321622817254.841381-UTR-P-fluviatile_contig8:3087207..3089032Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3087208..3089032 +
1693571741.9298613-UTR-P-fluviatile_contig8:3087207..30890321693571741.9298613-UTR-P-fluviatile_contig8:3087207..3089032Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3087208..3089032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817254.8171039-CDS-P-fluviatile_contig8:3086374..30864131622817254.8171039-CDS-P-fluviatile_contig8:3086374..3086413Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3086375..3086413 +
1693571741.909493-CDS-P-fluviatile_contig8:3086374..30864131693571741.909493-CDS-P-fluviatile_contig8:3086374..3086413Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3086375..3086413 +
1622817254.829195-CDS-P-fluviatile_contig8:3086772..30872071622817254.829195-CDS-P-fluviatile_contig8:3086772..3087207Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3086773..3087207 +
1693571741.9202244-CDS-P-fluviatile_contig8:3086772..30872071693571741.9202244-CDS-P-fluviatile_contig8:3086772..3087207Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3086773..3087207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14604.1

>prot_P-fluviatile_contig8.14604.1 ID=prot_P-fluviatile_contig8.14604.1|Name=mRNA_P-fluviatile_contig8.14604.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=158bp
MPRKGGGHDDHPHLVFDTASSPFSKLGSALLVGGVVFGGIGVVIGAVAHQ
QYKGGESAREDGCQTREACGVVANMLRARRNTTDLLKNIVKSWVQLGNND
HALPGSADYGSLWFVAPECARRVHQHLFCFVLHECGLTWSVRLAALGILV
RFSASDK*
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mRNA from alignment at P-fluviatile_contig8:3086354..3089032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14604.1 ID=mRNA_P-fluviatile_contig8.14604.1|Name=mRNA_P-fluviatile_contig8.14604.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2679bp|location=Sequence derived from alignment at P-fluviatile_contig8:3086354..3089032+ (Porterinema fluviatile SAG_2381)
AGGACGATCGTGTCGCGGTCGATGCCCAGGAAGGGCGGCGGACACGACGA
CCACCCTCACGTGAGTTGCAAGGCTGTTACTTACTGCAGTAGGGGTGAGC
GGGGGAGGAGAAAGCATGGTTTTGTTTAGAGGCGAAAGGAGGAAAATGGA
AGGCATTCGGTGCTCGTGGCTGGGTTTGCCTCGGTGCGTAGGAGGGGTTC
CCACGAGGGCTTGGAGGGTCTAGATATTTGACAGTCCCTTGGGCGGAACC
CACACATGCGTCGTGGTTCAGGAAATCTCCAAACACTTCGTGCCCTGTGT
GCGTGAAAACAATATCTTCCCTCCTTTTCCCTCGCTCGCTTCTTCCGTCC
CTCTCCTTCACCGCCCCTGCCGCTCCTACCTCCCGGTTCTCTTCCCTCCC
CCGCTACTTGCTCTCTCAGTTGGTGTTCGACACCGCAAGCTCCCCCTTCA
GTAAGCTCGGCTCGGCTCTGCTCGTGGGCGGAGTCGTGTTCGGAGGTATC
GGGGTCGTAATCGGGGCGGTCGCGCACCAGCAGTACAAGGGCGGTGAGTC
GGCGAGGGAGGACGGATGCCAAACGCGCGAGGCGTGTGGGGTGGTCGCCA
ACATGTTGAGGGCACGCAGGAATACTACCGACCTGTTGAAAAACATCGTG
AAGAGTTGGGTCCAATTAGGAAACAATGATCACGCATTGCCCGGCAGCGC
AGATTACGGATCCTTATGGTTTGTAGCTCCGGAGTGTGCGCGCCGTGTCC
ACCAGCACCTGTTTTGTTTTGTTTTGCACGAGTGTGGGCTCACGTGGTCC
GTTCGCCTCGCGGCTCTGGGGATCCTGGTTCGATTTTCCGCGTCAGACAA
ATAAAGTTTATGGGGAGGGTGTATCAATTTTCCAGTTTTTACGTTCCGCA
ACGGAAGGAAGTCTTGGCGGGGCGCGGAACGAGTGCTAGCGCAAGGGCTT
GGAATATTCGCAGCGGCTACGAACGCGCCTGTCGTTGCCGTTTTTTGTTT
TTTTGTAAGTTTGTGGAGTTCGTTTTTGGTCGGCTGACATTGGGAGAATC
TGCTGCCTCTGAGGTGCAGCAGCATCTTGGTTCATCTGCCTCATCAGCGG
ACGCATGTAGAGACGGCGAGTACATCGCAGGATAAAAGACACGGGCGAAT
AGAGCACCGAGAGCAAATTGTCCCGATCGACCGATAGAGTCGAAACATTT
CTACACGGTTGCCGTTGAAGGGCAGCAGATAGTAGCTCGAGGTGAGCACA
CAGGACAATAACATAAACGCCATCCGCTCGCCAACCTGGTGGCTCTCCAT
CAGCCCGTGCATGATTTATATGGGCAAAAAGCTCGCACCGAAGAATCTCG
CTCCCCTTGTGCTGTCCCGCTCTTGCTCCCCGTAAATGTATCTTCTCTCT
CGGGTTTCCCGCAACATCCTCAAAACCACATCACGTGTTTGTCGTTGTCG
ATCTGGCGTGCTTGCCGTGAAGGATACTGGGGGAAGGAGGACTGAGACAT
CTACCTGTATGGATTGGGTACTCTTGAGCGAAGGCCCGCCGCAGACACAG
GGCGCGAGCCGGACTGGGACGGGGCGGATCAACGACGGGTGTCGTCTCGA
GAATCCGCTGCCGCTATCTAGGGAAGGTGCAGGGGCGGAAAATCGAACCG
TGGAGGCGTTGCAGCATGGCCCGTTCCTACGAAGGGTTGCGCTGCGCTTG
CCTGCACGACGAGACGGACACGTGTGACATTCGCCACCCGCAGCGTGGGA
AAAAGGACCCGTGGGATATCGAAGACATAAATCGTTGATTCCGTGACATG
GAGGTGGAGGTGTCGTCGTTTATCGTGCAGCCACTCTCCGTGTACACGCG
GGAGCTCACAAAAATTTGGTCGTGCGTCTCCAGGGCTCTTCAACTAGTTT
TCGGGTGGGTGTTGGAATTTTTTTTTGACGCTGCTTGGGCAAGGATTGCT
CCGCGACGAAGGGGTCAAGCGCCGATGCGCTTGCAGGCTTTGCTCACGAA
AGACCTGCAGTAGCGCAACACGATCGTTGTATAAAAATTACTGAAAGCGG
AAATAATTGTTTTTTTGGTCTGCGACGCGTGTTGCGTCGGATGTCTTGCC
TGGCAAGCATCGAACGCCGACTGCTGGCCCGGATTCCCGTCCTCGTGTTT
GCACCAAGATGAGCTGCTGAACCACGAGAAAAGCTTCCTCAGCTCCCTCT
CGTATTGTGCATCCCCGAGGCAACAGGTTGCCCTCCATGTTTAGTGTGCG
GGAGGGAGTCTTGGTGCTGCACGGGCGCGTGTCCCCGTCCCGAGATTGAT
TGACATTGCGCATCTCCAATTCGTGAAGGCGTGAAGTCGTCGCCCGCGAG
CATCATGTTTCGGCCTGATGTCGGAACTCATCAGAGTTTCGACCCCGCCC
CCCAGCACCTTCGTTCCAGAAGTACAAGCCAATTCTTGCTGGGATCAATG
GCCGCCACACCAGTACACATGGTCGATATCTCCACACACGACAGTTTTCT
GTACGCAGACGCCGTACTAGTTGCGGAGAGGATCACTGCTGTGCATATGA
AGACGATTGGTTTGTCGTTTTTCCTTCCATTGATCGCCTCACCCGAACTG
TCTCAGGGTTGAACGAACTCGGACTTTGTTGCCCTGCATGTGCGAGGCGG
GGTGGTGGTCGATGCGATGAAGCACTGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3086354..3089032+

>mRNA_P-fluviatile_contig8.14604.1 ID=mRNA_P-fluviatile_contig8.14604.1|Name=mRNA_P-fluviatile_contig8.14604.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=948bp|location=Sequence derived from alignment at P-fluviatile_contig8:3086354..3089032+ (Porterinema fluviatile SAG_2381)
ATGCCCAGGAAGGGCGGCGGACACGACGACCACCCTCACATGCCCAGGAA
GGGCGGCGGACACGACGACCACCCTCACTTGGTGTTCGACACCGCAAGCT
CCCCCTTCAGTAAGCTCGGCTCGGCTCTGCTCGTGGGCGGAGTCGTGTTC
GGAGGTATCGGGGTCGTAATCGGGGCGGTCGCGCACCAGCAGTACAAGGG
CGGTGAGTCGGCGAGGGAGGACGGATGCCAAACGCGCGAGGCGTGTGGGG
TGGTCGCCAACATGTTGAGGGCACGCAGGAATACTACCGACCTGTTGAAA
AACATCGTGAAGAGTTGGGTCCAATTAGGAAACAATGATCACGCATTGCC
CGGCAGCGCAGATTACGGATCCTTATGGTTTGTAGCTCCGGAGTGTGCGC
GCCGTGTCCACCAGCACCTGTTTTGTTTTGTTTTGCACGAGTGTGGGCTC
ACGTGGTCCGTTCGCCTCGCGGCTCTGGGGATCCTGGTTCGATTTTCCGC
GTCAGACAAATAATTGGTGTTCGACACCGCAAGCTCCCCCTTCAGTAAGC
TCGGCTCGGCTCTGCTCGTGGGCGGAGTCGTGTTCGGAGGTATCGGGGTC
GTAATCGGGGCGGTCGCGCACCAGCAGTACAAGGGCGGTGAGTCGGCGAG
GGAGGACGGATGCCAAACGCGCGAGGCGTGTGGGGTGGTCGCCAACATGT
TGAGGGCACGCAGGAATACTACCGACCTGTTGAAAAACATCGTGAAGAGT
TGGGTCCAATTAGGAAACAATGATCACGCATTGCCCGGCAGCGCAGATTA
CGGATCCTTATGGTTTGTAGCTCCGGAGTGTGCGCGCCGTGTCCACCAGC
ACCTGTTTTGTTTTGTTTTGCACGAGTGTGGGCTCACGTGGTCCGTTCGC
CTCGCGGCTCTGGGGATCCTGGTTCGATTTTCCGCGTCAGACAAATAA
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