mRNA_P-fluviatile_contig8.14334.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14334.1
Unique NamemRNA_P-fluviatile_contig8.14334.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14334.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.010e-21
Identity = 63/129 (48.84%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:    7 RAGDAPVVAAAALARVVTRSGTPLTGMALGVAHPCQTACERWARVLCAAGAQTVRQITGALLL---------------------HAGGGVTRATDEASRSSPLQAA-VAGLDCVLCDYPGAWSGAFFSD 327
            +AG +  V+ AALA+ V+++GTPL GMA+GVAHP  T CERWA+VL AAGAQTV +ITG  LL                         G   A   +S SS LQA  +AGLDCVLCD+PGAW+G+   D
Sbjct: 2748 KAGGSHKVSRAALAKAVSKTGTPLLGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRITGDPLLLLPPQEKTADWTTSSPSRGTRSCSRGRRTAGASSSSSSSLQAGQLAGLDCVLCDFPGAWNGSGGGD 2876
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BLAST of mRNA_P-fluviatile_contig8.14334.1 vs. uniprot
Match: D7FGY7_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY7_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.870e-20
Identity = 61/134 (45.52%), Postives = 76/134 (56.72%), Query Frame = 1 
Query:   40 ALARVVTRSGTPLTGMALGVAHPCQTACERWARVLCAAGAQTVRQITGALLL-----------------------HAGGGVTRATDEASRSSPLQAA-VAGLDCVLCDYPGAWSGAFFSDGGGRQSGVKDTPPR 369
            ALA+ V+++GTPL GMA+GVAHP  T CERWA+VL AAGAQTV ++TG  LL                           G   A   +S SS LQA  +AGLDCVLCD+PGAW+G+   D G  ++     P R
Sbjct:  577 ALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWNGSGGGDDGECRAATGRRPVR 710
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L777_9PHAE1.010e-2148.84BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FGY7_ECTSI3.870e-2045.52BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:540350..540724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-00_000140.1
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.2815332-CDS-P-fluviatile_contig8:540349..5407241622817223.2815332-CDS-P-fluviatile_contig8:540349..540724Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 540350..540724 +
1693571569.6444867-CDS-P-fluviatile_contig8:540349..5407241693571569.6444867-CDS-P-fluviatile_contig8:540349..540724Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 540350..540724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14334.1prot_P-fluviatile_contig8.14334.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 540350..540724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14334.1

>prot_P-fluviatile_contig8.14334.1 ID=prot_P-fluviatile_contig8.14334.1|Name=mRNA_P-fluviatile_contig8.14334.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=125bp
ARRAGDAPVVAAAALARVVTRSGTPLTGMALGVAHPCQTACERWARVLCA
AGAQTVRQITGALLLHAGGGVTRATDEASRSSPLQAAVAGLDCVLCDYPG
AWSGAFFSDGGGRQSGVKDTPPRTA
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mRNA from alignment at P-fluviatile_contig8:540350..540724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14334.1 ID=mRNA_P-fluviatile_contig8.14334.1|Name=mRNA_P-fluviatile_contig8.14334.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=375bp|location=Sequence derived from alignment at P-fluviatile_contig8:540350..540724+ (Porterinema fluviatile SAG_2381)
GCCCGGAGGGCCGGTGACGCCCCGGTTGTGGCGGCGGCGGCCCTGGCGAG
AGTTGTCACTCGGTCTGGGACGCCGCTGACAGGGATGGCGCTCGGCGTGG
CGCACCCGTGCCAGACTGCGTGCGAGCGCTGGGCGAGGGTGCTCTGTGCG
GCGGGGGCTCAGACCGTGCGGCAGATCACGGGCGCCCTTCTTCTTCACGC
TGGTGGCGGCGTTACGAGGGCAACGGATGAGGCATCGCGCTCGTCGCCGC
TCCAAGCGGCTGTAGCAGGCCTCGACTGCGTGCTGTGCGACTATCCCGGC
GCGTGGAGCGGCGCCTTCTTCAGCGACGGCGGCGGCCGACAGTCGGGGGT
TAAGGACACTCCTCCTCGGACGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:540350..540724+

>mRNA_P-fluviatile_contig8.14334.1 ID=mRNA_P-fluviatile_contig8.14334.1|Name=mRNA_P-fluviatile_contig8.14334.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=750bp|location=Sequence derived from alignment at P-fluviatile_contig8:540350..540724+ (Porterinema fluviatile SAG_2381)
GCCCGGAGGGCCGGTGACGCCCCGGTTGTGGCGGCGGCGGCCCTGGCGAG
AGTTGTCACTCGGTCTGGGACGCCGCTGACAGGGATGGCGCTCGGCGTGG
CGCACCCGTGCCAGACTGCGTGCGAGCGCTGGGCGAGGGTGCTCTGTGCG
GCGGGGGCTCAGACCGTGCGGCAGATCACGGGCGCCCTTCTTCTTCACGC
TGGTGGCGGCGTTACGAGGGCAACGGATGAGGCATCGCGCTCGTCGCCGC
TCCAAGCGGCTGTAGCAGGCCTCGACTGCGTGCTGTGCGACTATCCCGGC
GCGTGGAGCGGCGCCTTCTTCAGCGACGGCGGCGGCCGACAGTCGGGGGT
TAAGGACACTCCTCCTCGGACGGCGGCCCGGAGGGCCGGTGACGCCCCGG
TTGTGGCGGCGGCGGCCCTGGCGAGAGTTGTCACTCGGTCTGGGACGCCG
CTGACAGGGATGGCGCTCGGCGTGGCGCACCCGTGCCAGACTGCGTGCGA
GCGCTGGGCGAGGGTGCTCTGTGCGGCGGGGGCTCAGACCGTGCGGCAGA
TCACGGGCGCCCTTCTTCTTCACGCTGGTGGCGGCGTTACGAGGGCAACG
GATGAGGCATCGCGCTCGTCGCCGCTCCAAGCGGCTGTAGCAGGCCTCGA
CTGCGTGCTGTGCGACTATCCCGGCGCGTGGAGCGGCGCCTTCTTCAGCG
ACGGCGGCGGCCGACAGTCGGGGGTTAAGGACACTCCTCCTCGGACGGCG
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