mRNA_P-fluviatile_contig8.14466.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14466.1
Unique NamemRNA_P-fluviatile_contig8.14466.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1670428..1670896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size469
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14466.1prot_P-fluviatile_contig8.14466.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1670529..1670840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.408372-UTR-P-fluviatile_contig8:1670427..16705281622817218.408372-UTR-P-fluviatile_contig8:1670427..1670528Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1670428..1670528 +
1693571543.9125245-UTR-P-fluviatile_contig8:1670427..16705281693571543.9125245-UTR-P-fluviatile_contig8:1670427..1670528Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1670428..1670528 +
1622817218.42967-UTR-P-fluviatile_contig8:1670840..16708961622817218.42967-UTR-P-fluviatile_contig8:1670840..1670896Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1670841..1670896 +
1693571543.9370503-UTR-P-fluviatile_contig8:1670840..16708961693571543.9370503-UTR-P-fluviatile_contig8:1670840..1670896Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1670841..1670896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.4190052-CDS-P-fluviatile_contig8:1670528..16708401622817218.4190052-CDS-P-fluviatile_contig8:1670528..1670840Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1670529..1670840 +
1693571543.9287684-CDS-P-fluviatile_contig8:1670528..16708401693571543.9287684-CDS-P-fluviatile_contig8:1670528..1670840Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1670529..1670840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14466.1

>prot_P-fluviatile_contig8.14466.1 ID=prot_P-fluviatile_contig8.14466.1|Name=mRNA_P-fluviatile_contig8.14466.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
MIKMNGCRCEQRLTKEYNKERSRSKIKGGRLLLALRPCTERRVHQHKIRQ
LYGTVNVSFLMVASFFGIHTRVKDPGVSTSSRKNKSLQWFAVRATNAKSQ
PHL*
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mRNA from alignment at P-fluviatile_contig8:1670428..1670896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14466.1 ID=mRNA_P-fluviatile_contig8.14466.1|Name=mRNA_P-fluviatile_contig8.14466.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=469bp|location=Sequence derived from alignment at P-fluviatile_contig8:1670428..1670896+ (Porterinema fluviatile SAG_2381)
GTGCGTTTCCATTTCGAGTAAGCAAGGGGGGAGGGAGAATGATGACCGGG
GGAGGATGAATGGGGTGAGCAGAGATTTGGAAGCAGGAAAAAAACGGGAA
CATGATCAAAATGAACGGATGCCGATGCGAGCAGAGATTGACGAAGGAGT
ACAACAAAGAGCGCTCTCGTTCGAAAATCAAGGGTGGGCGCCTCTTGCTC
GCTCTTCGTCCATGCACCGAGAGGCGAGTCCACCAGCACAAGATCAGACA
GTTGTACGGGACAGTGAACGTAAGCTTTCTCATGGTCGCCTCGTTCTTTG
GCATCCACACGCGGGTAAAGGATCCCGGTGTCAGCACAAGCTCTAGAAAA
AACAAATCACTCCAATGGTTCGCGGTGAGAGCTACAAATGCCAAATCCCA
ACCACATCTGTGAGATCTCTTTCGTAGCCAATTTGTGTGAAGAAACTTCG
TTGATTCTAAAAGTCTGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1670428..1670896+

>mRNA_P-fluviatile_contig8.14466.1 ID=mRNA_P-fluviatile_contig8.14466.1|Name=mRNA_P-fluviatile_contig8.14466.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig8:1670428..1670896+ (Porterinema fluviatile SAG_2381)
ATGATCAAAATGAACGGATGCCGATGCGAGCAGAGATTGACGAAGGAGTA
CAACAAAGAGCGCTCTCGTTCGAAAATCAAGGGTGGGCGCCTCTTGCTCG
CTCTTCGTCCATGCACCGAGAGGCGAGTCCACCAGCACAAGATCAGACAG
TTGTACGGGACAGTGAACGTAAGCTTTCTCATGGTCGCCTCGTTCTTTGG
CATCCACACGCGGGTAAAGGATCCCGGTGTCAGCACAAGCTCTAGAAAAA
ACAAATCACTCCAATGGTTCGCGGTGAGAGCTACAAATGCCAAATCCCAA
CCACATCTGTGAATGATCAAAATGAACGGATGCCGATGCGAGCAGAGATT
GACGAAGGAGTACAACAAAGAGCGCTCTCGTTCGAAAATCAAGGGTGGGC
GCCTCTTGCTCGCTCTTCGTCCATGCACCGAGAGGCGAGTCCACCAGCAC
AAGATCAGACAGTTGTACGGGACAGTGAACGTAAGCTTTCTCATGGTCGC
CTCGTTCTTTGGCATCCACACGCGGGTAAAGGATCCCGGTGTCAGCACAA
GCTCTAGAAAAAACAAATCACTCCAATGGTTCGCGGTGAGAGCTACAAAT
GCCAAATCCCAACCACATCTGTGA
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