mRNA_P-fluviatile_contig8.14376.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14376.1
Unique NamemRNA_P-fluviatile_contig8.14376.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:859114..859701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size588
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14376.1prot_P-fluviatile_contig8.14376.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 859233..859571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.907259-UTR-P-fluviatile_contig8:859113..8592321622817217.907259-UTR-P-fluviatile_contig8:859113..859232Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 859114..859232 +
1693571543.3216298-UTR-P-fluviatile_contig8:859113..8592321693571543.3216298-UTR-P-fluviatile_contig8:859113..859232Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 859114..859232 +
1622817217.9356291-UTR-P-fluviatile_contig8:859571..8597011622817217.9356291-UTR-P-fluviatile_contig8:859571..859701Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 859572..859701 +
1693571543.3454633-UTR-P-fluviatile_contig8:859571..8597011693571543.3454633-UTR-P-fluviatile_contig8:859571..859701Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 859572..859701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.9226649-CDS-P-fluviatile_contig8:859232..8595711622817217.9226649-CDS-P-fluviatile_contig8:859232..859571Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 859233..859571 +
1693571543.3323464-CDS-P-fluviatile_contig8:859232..8595711693571543.3323464-CDS-P-fluviatile_contig8:859232..859571Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 859233..859571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14376.1

>prot_P-fluviatile_contig8.14376.1 ID=prot_P-fluviatile_contig8.14376.1|Name=mRNA_P-fluviatile_contig8.14376.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=113bp
MVTAVVVFCLALFRRQVLRHIMSCTPVMRFERHVVRQRASRQQRWRLRPS
VSPRSEEKGNKKAGSQQMVWELNRREEENSESSLLCGPSRVGRLHHPWEV
MVWLTTGRYLNI*
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mRNA from alignment at P-fluviatile_contig8:859114..859701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14376.1 ID=mRNA_P-fluviatile_contig8.14376.1|Name=mRNA_P-fluviatile_contig8.14376.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=588bp|location=Sequence derived from alignment at P-fluviatile_contig8:859114..859701+ (Porterinema fluviatile SAG_2381)
ATGAAATAGGTGGAATCACAAATGTGATACGTGTGTGTGAAATTCCGGGG
GGGGGGGAATCGCTTGCCGAGTACAACAAGCCTAGGGATGCTAGTTCGGC
CTTCACGCTCCGGCGGCTGATGGTGACGGCAGTCGTCGTTTTTTGTCTGG
CTCTTTTCCGGCGACAAGTATTGAGGCATATCATGTCTTGTACCCCTGTA
ATGCGATTCGAGCGTCATGTTGTGCGTCAGCGCGCAAGCAGGCAGCAAAG
GTGGAGATTGCGCCCGAGCGTGTCGCCGAGGTCGGAGGAAAAAGGAAACA
AGAAGGCAGGGTCGCAGCAGATGGTGTGGGAATTGAATCGTCGAGAGGAG
GAGAACAGTGAGTCCAGTCTGCTTTGTGGCCCCAGTCGTGTCGGAAGATT
GCACCACCCATGGGAGGTTATGGTATGGCTGACGACCGGCCGATATCTCA
ACATTTAGGTTACAGTAGCTCGTACATCATGGCTGTGACCCCAATAACAA
TGGGGTCTTGGTATATGTTGCAAGTTCACGAGAGAACCAGATCGCCGGAG
ATGCGCAACCGAACAAGACGGCGCACAGTCGCATGGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:859114..859701+

>mRNA_P-fluviatile_contig8.14376.1 ID=mRNA_P-fluviatile_contig8.14376.1|Name=mRNA_P-fluviatile_contig8.14376.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=678bp|location=Sequence derived from alignment at P-fluviatile_contig8:859114..859701+ (Porterinema fluviatile SAG_2381)
ATGGTGACGGCAGTCGTCGTTTTTTGTCTGGCTCTTTTCCGGCGACAAGT
ATTGAGGCATATCATGTCTTGTACCCCTGTAATGCGATTCGAGCGTCATG
TTGTGCGTCAGCGCGCAAGCAGGCAGCAAAGGTGGAGATTGCGCCCGAGC
GTGTCGCCGAGGTCGGAGGAAAAAGGAAACAAGAAGGCAGGGTCGCAGCA
GATGGTGTGGGAATTGAATCGTCGAGAGGAGGAGAACAGTGAGTCCAGTC
TGCTTTGTGGCCCCAGTCGTGTCGGAAGATTGCACCACCCATGGGAGGTT
ATGGTATGGCTGACGACCGGCCGATATCTCAACATTTAGATGGTGACGGC
AGTCGTCGTTTTTTGTCTGGCTCTTTTCCGGCGACAAGTATTGAGGCATA
TCATGTCTTGTACCCCTGTAATGCGATTCGAGCGTCATGTTGTGCGTCAG
CGCGCAAGCAGGCAGCAAAGGTGGAGATTGCGCCCGAGCGTGTCGCCGAG
GTCGGAGGAAAAAGGAAACAAGAAGGCAGGGTCGCAGCAGATGGTGTGGG
AATTGAATCGTCGAGAGGAGGAGAACAGTGAGTCCAGTCTGCTTTGTGGC
CCCAGTCGTGTCGGAAGATTGCACCACCCATGGGAGGTTATGGTATGGCT
GACGACCGGCCGATATCTCAACATTTAG
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