mRNA_P-fluviatile_contig8.14493.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14493.1
Unique NamemRNA_P-fluviatile_contig8.14493.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1968789..1970034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size689
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.2172954-CDS-P-fluviatile_contig8:1968788..19689261622817216.2172954-CDS-P-fluviatile_contig8:1968788..1968926Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1968789..1968926 +
1693571534.4625757-CDS-P-fluviatile_contig8:1968788..19689261693571534.4625757-CDS-P-fluviatile_contig8:1968788..1968926Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1968789..1968926 +
1622817216.227659-CDS-P-fluviatile_contig8:1969484..19700331622817216.227659-CDS-P-fluviatile_contig8:1969484..1970033Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1969485..1970033 +
1693571534.47611-CDS-P-fluviatile_contig8:1969484..19700331693571534.47611-CDS-P-fluviatile_contig8:1969484..1970033Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1969485..1970033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14493.1prot_P-fluviatile_contig8.14493.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1968789..1970033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14493.1

>prot_P-fluviatile_contig8.14493.1 ID=prot_P-fluviatile_contig8.14493.1|Name=mRNA_P-fluviatile_contig8.14493.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=229bp
INAPRPKVFSFLAQRPRPQENVTPMPSLAAPSSTRRRRAQAASCIQAAIR
GERIRNRVVQRALASFREVCGRIAAECPGLTAESLCGPINLPPWLDANGR
PASRAGSTKATDLHVAGNAGCISRAGAADSTSAAIPSETEGDAVSPDEAT
KASDRRLEPQVSPSRPPAAPLPSAAARLKPLVSGFVLEPPGADADADDAD
ADDAADAAGRRDGTEAAERGGPAVDQADQ
back to top

mRNA from alignment at P-fluviatile_contig8:1968789..1970034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14493.1 ID=mRNA_P-fluviatile_contig8.14493.1|Name=mRNA_P-fluviatile_contig8.14493.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1246bp|location=Sequence derived from alignment at P-fluviatile_contig8:1968789..1970034+ (Porterinema fluviatile SAG_2381)
ATAAACGCGCCGCGCCCCAAGGTGTTCTCGTTCCTGGCTCAAAGACCGCG
TCCGCAGGAGAATGTTACGCCCATGCCATCTTTGGCAGCGCCCAGTTCTA
CACGCCGTCGGCGGGCTCAAGCTGCCTCATGCATTCAGGTGCGGGTTGTA
TGTGTTTTTGGTATGTTTTATTTCTTGTGCTTTTTGAAAACTGAAGTGGA
CAGCATGATATTTGTGAGTGTCACCGCTGTGACATAACGTGCTCATGTGT
TGAACAGCTTTAGCGAAAGGTTTCAAGTAGATCGAGAGTGCAGGTGCAGC
GGCTGCGAACATTCACATCACCCCGTTTCAAATAGCAGATCATGGCTCCA
CGCGTGCGTGCCGGTCGAAAAAAGGTTCGTTGCCGCTGAGATCAGGTACC
GACGCAAGATAGATCCTTCGGCCAATCTCAGCACCCTGCAATACAGCAAC
ACAAGCAGCAGTCGTAAGCCATCGATGACCCTTCTTTGAAACAAAAGCAG
CTTGAATTCCAAGTCATCGCAAACCACACTGCTTGAAATATGTGTGTACC
TGCTCCAGGCGACACACAATTTTTCCATCGGCGGAGGCTGGCGGTCTCGT
CAATGCAGCCACACTCCTGTGTCGCCCCCTTGTCTGAAAAGACGCCTGTT
GCCTCCTTGTTTTCCTCTCCGTGACAAACACGCTTCCGCATTGTAGGCAG
CTATACGTGGAGAGAGAATCAGAAACCGCGTGGTGCAACGAGCTCTCGCC
TCCTTCCGCGAAGTGTGTGGTAGAATTGCCGCCGAGTGCCCGGGCTTGAC
AGCGGAGAGCTTGTGCGGTCCGATCAATCTTCCGCCTTGGCTCGACGCCA
ACGGTCGCCCTGCCTCTCGAGCTGGCTCCACTAAGGCTACTGATCTACAT
GTAGCTGGAAATGCTGGTTGCATTTCCCGTGCTGGTGCTGCTGATTCTAC
CAGTGCTGCTATTCCTTCGGAGACCGAGGGCGATGCTGTCTCACCTGACG
AGGCTACCAAGGCTTCAGACAGACGTCTTGAACCGCAAGTATCGCCCAGT
CGCCCGCCGGCGGCGCCCTTACCCTCGGCAGCAGCAAGATTGAAACCATT
GGTGAGCGGATTTGTACTGGAGCCTCCTGGTGCTGATGCTGATGCTGATG
ATGCCGATGCTGATGACGCTGCTGATGCTGCCGGGCGGCGAGACGGAACT
GAGGCGGCGGAGCGGGGGGGGCCAGCAGTGGATCAAGCTGACCAAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:1968789..1970034+

>mRNA_P-fluviatile_contig8.14493.1 ID=mRNA_P-fluviatile_contig8.14493.1|Name=mRNA_P-fluviatile_contig8.14493.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1374bp|location=Sequence derived from alignment at P-fluviatile_contig8:1968789..1970034+ (Porterinema fluviatile SAG_2381)
ATAAACGCGCCGCGCCCCAAGGTGTTCTCGTTCCTGGCTCAAAGACCGCG
TCCGCAGGAGAATGTTACGCCCATGCCATCTTTGGCAGCGCCCAGTTCTA
CACGCCGTCGGCGGGCTCAAGCTGCCTCATGCATTCAGATAAACGCGCCG
CGCCCCAAGGTGTTCTCGTTCCTGGCTCAAAGACCGCGTCCGCAGGAGAA
TGTTACGCCCATGCCATCTTTGGCAGCGCCCAGTTCTACACGCCGTCGGC
GGGCTCAAGCTGCCTCATGCATTCAGGCAGCTATACGTGGAGAGAGAATC
AGAAACCGCGTGGTGCAACGAGCTCTCGCCTCCTTCCGCGAAGTGTGTGG
TAGAATTGCCGCCGAGTGCCCGGGCTTGACAGCGGAGAGCTTGTGCGGTC
CGATCAATCTTCCGCCTTGGCTCGACGCCAACGGTCGCCCTGCCTCTCGA
GCTGGCTCCACTAAGGCTACTGATCTACATGTAGCTGGAAATGCTGGTTG
CATTTCCCGTGCTGGTGCTGCTGATTCTACCAGTGCTGCTATTCCTTCGG
AGACCGAGGGCGATGCTGTCTCACCTGACGAGGCTACCAAGGCTTCAGAC
AGACGTCTTGAACCGCAAGTATCGCCCAGTCGCCCGCCGGCGGCGCCCTT
ACCCTCGGCAGCAGCAAGATTGAAACCATTGGTGAGCGGATTTGTACTGG
AGCCTCCTGGTGCTGATGCTGATGCTGATGATGCCGATGCTGATGACGCT
GCTGATGCTGCCGGGCGGCGAGACGGAACTGAGGCGGCGGAGCGGGGGGG
GCCAGCAGTGGATCAAGCTGACCAAGCAGCTATACGTGGAGAGAGAATCA
GAAACCGCGTGGTGCAACGAGCTCTCGCCTCCTTCCGCGAAGTGTGTGGT
AGAATTGCCGCCGAGTGCCCGGGCTTGACAGCGGAGAGCTTGTGCGGTCC
GATCAATCTTCCGCCTTGGCTCGACGCCAACGGTCGCCCTGCCTCTCGAG
CTGGCTCCACTAAGGCTACTGATCTACATGTAGCTGGAAATGCTGGTTGC
ATTTCCCGTGCTGGTGCTGCTGATTCTACCAGTGCTGCTATTCCTTCGGA
GACCGAGGGCGATGCTGTCTCACCTGACGAGGCTACCAAGGCTTCAGACA
GACGTCTTGAACCGCAAGTATCGCCCAGTCGCCCGCCGGCGGCGCCCTTA
CCCTCGGCAGCAGCAAGATTGAAACCATTGGTGAGCGGATTTGTACTGGA
GCCTCCTGGTGCTGATGCTGATGCTGATGATGCCGATGCTGATGACGCTG
CTGATGCTGCCGGGCGGCGAGACGGAACTGAGGCGGCGGAGCGGGGGGGG
CCAGCAGTGGATCAAGCTGACCAA
back to top