mRNA_P-fluviatile_contig79.14283.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14283.1
Unique NamemRNA_P-fluviatile_contig79.14283.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:461290..462192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size251
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14283.1prot_P-fluviatile_contig79.14283.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 461290..462192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817209.344513-CDS-P-fluviatile_contig79:461289..4613701622817209.344513-CDS-P-fluviatile_contig79:461289..461370Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 461290..461370 +
1693571518.2523758-CDS-P-fluviatile_contig79:461289..4613701693571518.2523758-CDS-P-fluviatile_contig79:461289..461370Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 461290..461370 +
1622817209.3564434-CDS-P-fluviatile_contig79:461533..4616201622817209.3564434-CDS-P-fluviatile_contig79:461533..461620Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 461534..461620 +
1693571518.2683227-CDS-P-fluviatile_contig79:461533..4616201693571518.2683227-CDS-P-fluviatile_contig79:461533..461620Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 461534..461620 +
1622817209.3682628-CDS-P-fluviatile_contig79:462111..4621921622817209.3682628-CDS-P-fluviatile_contig79:462111..462192Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 462112..462192 +
1693571518.2777743-CDS-P-fluviatile_contig79:462111..4621921693571518.2777743-CDS-P-fluviatile_contig79:462111..462192Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 462112..462192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14283.1

>prot_P-fluviatile_contig79.14283.1 ID=prot_P-fluviatile_contig79.14283.1|Name=mRNA_P-fluviatile_contig79.14283.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=83bp
DEQIVDFRQLLAALTHEIGRIGDGLLEGENSQQQARGDLRKRSLRMLLTQ
LKLYREVVDIYYNNKKGTSVVGGRLLQSRELDV
back to top

mRNA from alignment at P-fluviatile_contig79:461290..462192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14283.1 ID=mRNA_P-fluviatile_contig79.14283.1|Name=mRNA_P-fluviatile_contig79.14283.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=903bp|location=Sequence derived from alignment at P-fluviatile_contig79:461290..462192+ (Porterinema fluviatile SAG_2381)
GACGAGCAGATTGTCGATTTTCGGCAACTTCTGGCGGCCCTCACCCACGA
GATTGGACGGATCGGTGATGGGTTGCTTGAGGTGTGTAGTACATCGGGGA
GGTGCCGACCGAGTTGTCTTTTCTAACGGGAGAGGTCGCTGTTGCGCGAT
CTCTGGCACACTTTATGTTGAGTACCATCAACCTTGCTTGCGACAAACAG
TCAGTCAGACACCGTGATGGCTTGATATTCTTGTCCTGGTTCAGGGCGAG
AACTCTCAGCAACAAGCCCGGGGTGATTTGCGGAAGAGGAGTCTAAGGAT
GCTTCTCACACAATTGAAGCTATATCGCGAGGTGAGGTAGTAGTGTATGT
CCTTTCCGTTTGCTGGACGCTCGCCACTATCTTGCATTTTTCGGTCACGG
TTGTTGGATCGTGTGATGTCGTGCTCTCGGCCGTCAGTCGGCCCCGCGTC
GGCTGTACGCCGGCGTCATCAGCTCCCCTTTTTTGTGTTCGTCCCATCAA
TGATGGGCGTCGTCTACCCTTCTCCTCTTCCGGTGCTTCCGTTCACGTTT
CAGCGCAGGCTTACACGCTCCGGCGTAGGAGGGGTTCCCTAGACCGGATT
ATTTTCTTCTTTCACCTGCGCAGAAAAAAATAGGGTTCGAGAGAAAACCG
AGTGCACTGGTAAAATTACAGCAGAGATTTGCTTGCTGTTGCCTCGCCGT
GTAATGGCCGCATGTCGCTCCCTCACCGATAGATCTGATTGCCGTGTTGG
GACAATGTATGCATCCGAGGTCCGGCTGTAAGCTAGGAAAATATTTGCGT
TGCGTCTGATGCGTTCGTGCAGGTCGTGGACATCTACTACAACAACAAGA
AAGGAACCAGCGTTGTTGGGGGGCGTTTATTGCAGAGTCGTGAACTGGAC
GTG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig79:461290..462192+

>mRNA_P-fluviatile_contig79.14283.1 ID=mRNA_P-fluviatile_contig79.14283.1|Name=mRNA_P-fluviatile_contig79.14283.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=498bp|location=Sequence derived from alignment at P-fluviatile_contig79:461290..462192+ (Porterinema fluviatile SAG_2381)
GACGAGCAGATTGTCGATTTTCGGCAACTTCTGGCGGCCCTCACCCACGA
GATTGGACGGATCGGTGATGGGTTGCTTGAGGACGAGCAGATTGTCGATT
TTCGGCAACTTCTGGCGGCCCTCACCCACGAGATTGGACGGATCGGTGAT
GGGTTGCTTGAGGGCGAGAACTCTCAGCAACAAGCCCGGGGTGATTTGCG
GAAGAGGAGTCTAAGGATGCTTCTCACACAATTGAAGCTATATCGCGAGG
GCGAGAACTCTCAGCAACAAGCCCGGGGTGATTTGCGGAAGAGGAGTCTA
AGGATGCTTCTCACACAATTGAAGCTATATCGCGAGGTCGTGGACATCTA
CTACAACAACAAGAAAGGAACCAGCGTTGTTGGGGGGCGTTTATTGCAGA
GTCGTGAACTGGACGTGGTCGTGGACATCTACTACAACAACAAGAAAGGA
ACCAGCGTTGTTGGGGGGCGTTTATTGCAGAGTCGTGAACTGGACGTG
back to top