mRNA_P-fluviatile_contig12.1350.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1350.1
Unique NamemRNA_P-fluviatile_contig12.1350.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1350.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.500e-51
Identity = 91/198 (45.96%), Postives = 129/198 (65.15%), Query Frame = 1 
Query:  352 MKDAEELWKSRHPTMTDRERAKDMRANYSNKVLKHVPRTVPPPEVLVERFDLLIDAFKGLRDAKTGNLFLTDRLKKGIANLRPHLQKGCPSDPDPRDVQLYFFAGRTPEGVCKFRCSRGTSGTEGYHQPIRGVLSGFTTSPRLAHSVLLLFNYRRNHRMAVKHRGMPPEFAGWYAHWLLDDVQEVTAGWFS-APLFQG 942
            M D   +WK R+P+  D+E A DMRA Y++ +LKHVPR VP P++L+ RFD L++ FK +RD  TG    TDR+ K    LR H++KGC  DP+P  V L+   GRT +G+   R  +GT+  E +HQ +R ++  +  S  +AH  +LL NYRRNHRMA  HRGM P+  G+Y+HW ++D+Q +T GW+   PL+ G
Sbjct:  453 MDDVRSVWKLRNPSWNDQEIASDMRAKYASHLLKHVPRIVPSPDILLPRFDNLVETFKNVRDV-TGETLFTDRMHKATKLLRTHIEKGCLHDPNPDLVTLFEITGRTKDGLNLIRSIKGTNRIENFHQLLRLLMGSYHASALMAHFTMLLHNYRRNHRMAGLHRGMDPDLLGYYSHWEVEDIQAITKGWYDDEPLYPG 649
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BLAST of mRNA_P-fluviatile_contig12.1350.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 168 bits (425), Expect = 2.370e-42
Identity = 93/233 (39.91%), Postives = 139/233 (59.66%), Query Frame = 1 
Query:  220 LLAVLLDLFHAEYRLAELACKQHGAYYPFLAHLRDAFAIPDPTLMKDAEELWKSRHPTMTDRERAKDMRANYSNKV-LKHVPRTVPPPEVLVERFDLLIDAFKGLRDAKTGNLFLTDRLKKGIANLRPHLQKGCPSDPDPRDVQLYFFAGRTPEGVCKFRCSRGTSGTEGYHQPIRGVLSGFTTSPRLAHSVLLLFNYRRNHRMAVKHRGMPPEFAGWYAHWLLDDVQEVTAG 915
            +L V LD FHA  R+ +   K HGAY PF+A LRDAF +    + KD  +L  +   T    +   + + +Y     LK+  R +P  E L++R+D + + F+ + D+KT         KK + NLR H+Q GC SD    D+ LYF  GRT +G+  +RC+RGT+  EGYH+ +R +L  + +SP L H +LL FN+R N RMAVK+RG+P E+ G+Y+  LLD++   ++G
Sbjct:  432 ILKVRLDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFL----ISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRYDFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVP--DIPLYFLEGRTSQGLPIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLDEINRNSSG 658
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BLAST of mRNA_P-fluviatile_contig12.1350.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.320e-41
Identity = 98/268 (36.57%), Postives = 149/268 (55.60%), Query Frame = 1 
Query:  220 LLAVLLDLFHAEYRLAELACKQHGAYYPFLAHLRDAFAIPD-----PTLMKDAEELW-KSRHPTMTDR----ERAKDMRANYSNKVLKHVPRTVPPPEVLVERFDLLIDAFKGLRDAKTGNLFLTDRLKKGIANLRPHLQKGCPSDPDPRDVQLYFFAGRTPEGVCKFRCSRGTSGTEGYHQPIRGVLSGFTTSPRLAHSVLLLFNYRRNHRMAVKHRGMPPEFAGWYAHWLLDDVQEVTAGWFSA-PLFQGWGSTKNYLDTGELTGL 990
            + +V LD FH   R++ +  K HGA+ PF+A LRDA  + +        +K    +W +S   T+  R    E  + +     +  L+   R VP  +VL++RFD +I+ F G  D  +G + L  +  K +  LR H++  C SDPD   + +YF  G+   G+  +RC RGT+  EGYH+ +R +L+ +  SP LA SVLL FNYR N RM +K+RG+P    G Y  +L++ +Q  TA W S+ P+F  W +  + +DTGE  GL
Sbjct:  485 VFSVRLDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPD--GMAMYFAIGKNKHGLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGL 750
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BLAST of mRNA_P-fluviatile_contig12.1350.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.820e-36
Identity = 121/343 (35.28%), Postives = 168/343 (48.98%), Query Frame = 1 
Query:  223 LAVLLDLFHAEYRLAELACKQHGAYYPFLAHLRDAFAIPDPTLMKDAEELWKSRHPTMTDRERAKDMRANYSNKVLKHVPRTVPPPEVLVERFDLLIDAFKGLRDAKTGNLFLTDRLKKGIANLRPHLQKGCPSDPDPRDVQLYFFAGRTPEGVCK-FRCSRGTSGTEGYHQPIRGVLSGFTTSPRLAHSVLLLFNYRRNHRMAVKHRGMPPEFAGWYAHWLLDDVQEVTAGWFSAPLFQGWGSTKNYLDTGELTGLVTARNPSD-----TRKELETISLSEDWGGGNELVDPEEGEEGDSRETWGTADGMTPGARYFAQMQGSPPGQRPATSVKTQAEKNKF 1233
            L V LD FHA  R+++L  K HGA   +LA LRDAF   +   +   E   +    +  + E  K     Y    LK   R +P P  L+ERFDL+ + + GL D KT          + I  LR H+   C SD  P +  LYF AG+  E +C  FRC RGT+  EGYH  +R +L  +  SPRLAH +LL +NYR N R ++K+RG+     G+Y   +L+ +Q +T+  +    +  W  T  Y DTGE +G V +  PS+     T   LE +  +E+ G     +DP   +E            +T  A   A+MQG      P TS    AEK KF
Sbjct:  702 LVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVY---FLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSD-SPNEA-LYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSG-----IDPAFADEAVPLPE------LTGSAARLAKMQGVQVPHMPVTSA---AEKAKF 1024
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BLAST of mRNA_P-fluviatile_contig12.1350.1 vs. uniprot
Match: A0A835YZB9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 7.720e-34
Identity = 62/147 (42.18%), Postives = 92/147 (62.59%), Query Frame = 1 
Query:  547 GNLFLTDRLKKGIANLRPHLQKGCPSDPDPRDVQLYFFAGRTPEGVCKFRCSRGTSGTEGYHQPIRGVLSGFTTSPRLAHSVLLLFNYRRNHRMAVKHRGMPPEFAGWYAHWLLDDVQEVTAGWFSAPLFQGWGSTKNYLDTGELTG 987
            G  F + +  K + NLR H+   C  D     V  Y+       G+ ++RC+RGT+  E YH P+R +L+ +  SPRLAHS+LL FN+RRN RMA KH  +P E+  +Y+ + ++++Q++TAGWF+ PL+Q W    N+ DTGE TG
Sbjct:    2 GVAFFSKKCWKAVQNLRQHITGSCVGDA--AGVSPYYATHTDKAGLQRWRCARGTNKNERYHLPLRKLLAQYNLSPRLAHSLLLPFNHRRNVRMAGKHGDLPAEYTHFYSQYKIEELQDLTAGWFATPLYQSWHPVSNFADTGERTG 146
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BLAST of mRNA_P-fluviatile_contig12.1350.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.350e-29
Identity = 107/330 (32.42%), Postives = 158/330 (47.88%), Query Frame = 1 
Query:  262 LAELACKQHGAYYPFLAHLRDAFAIPDPTLMKDAEELWKSRHPTMTDRERAKDMRANYSNKVLKHVPRTVPPPEVLVERFDLLIDAFKGLRDAKTGNLFLTDRLKKGIANLRPHLQKGCPSDPDPRDVQLYFFAGRTPEGVCK-FRCSRGTSGTEGYHQPIRGVLSGFTTSPRLAHSVLLLFNYRRNHRMAVKHRGMPPEFAGWYAHWLLDDVQEVTAGWFSAPLFQGWGSTKNYLDTGELTGLVTARNPSD-----TRKELETISLSEDWGGGNELVDPEEGEEGDSRETWGTADGMTPGARYFAQMQGSPPGQRPATSVKTQAEKNKF 1233
            +++L  K HGA   +LA LRD F   +    +D   +  +       +E  +  +       LK   R +P P  L++RFD++ + + GL D KT          + I  LR H+   C SD  P +  LYF AG+  E +C  FRC RGT+  EG+H  +R +L  +  SPRLAH +LL +NYR N R ++K+RG+     G+Y   +L+ +Q +T+  +    +  W  T  Y DTGE +G V +  PS+     T   LE +  +E     N  +DP   EE            +T  A   A+MQG      P TS    AE +KF
Sbjct:  317 VSKLILKSHGACRAYLARLRDEFFKVNA---EDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRFDVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDA-PNEA-LYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSEVGGGGTDSVLEILGGAE-----NSSMDPASVEEAVPLPE------LTGSAARLAKMQGVQVPHMPVTSA---AENSKF 626
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BLAST of mRNA_P-fluviatile_contig12.1350.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.290e-28
Identity = 95/263 (36.12%), Postives = 133/263 (50.57%), Query Frame = 1 
Query:  463 RTVPPPEVLVERFDLLIDAFKGLRDAKTGNLFLTDRLKKGIANLRPHLQKGCPSDPDPRDVQLYFFAGRTPEGVCK-FRCSRGTSGTEGYHQPIRGVLSGFTTSPRLAHSVLLLFNYRRNHRMAVKHRGMPPEFAGWYAHWLLDDVQEVTAGWFSAPLFQGWGSTKNYLDTGELTGLVTARNPSD-----TRKELETISLSEDWGGGNELVDPEEGEEGDSRETWGTADGMTPGARYFAQMQGSPPGQRPATSVKTQAEKNKF 1233
            R +P P  L+ERFDL+ + + GL D KT          + I  LR H+   C SD  P +  LYF AG+  E +C  FRC RGT+  EGYH  +R +L  +  SPRLAH +LL +NYR N R ++K+RG+     G+Y   +L+ +Q +T+  +    +  W  T  Y DTGE +G V +  PS+     T   LE +  +E+ G     +DP   +E            +T  A   A+MQG      P TS    AEK KF
Sbjct:  206 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSD-SPNEA-LYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSG-----IDPAFADEAVPLPE------LTGSAARLAKMQGVQVPHMPVTSA---AEKAKF 451
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0J2_ECTSI2.500e-5145.963'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1Y2A9B5_9FUNG2.370e-4239.913'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE1.320e-4136.573'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JET4_9PHAE1.820e-3635.283'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A835YZB9_9STRA7.720e-3442.18Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5KEU8_9PHAE1.350e-2932.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE4.290e-2836.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:463765..466191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue2.8e-46
Seed eggNOG ortholog2880.D7G0J2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size1234
Cds size1233
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1350.1prot_P-fluviatile_contig12.1350.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 463765..466191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.4119582-CDS-P-fluviatile_contig12:463764..4638461622815492.4119582-CDS-P-fluviatile_contig12:463764..463846Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 463765..463846 -
1693562052.953483-CDS-P-fluviatile_contig12:463764..4638461693562052.953483-CDS-P-fluviatile_contig12:463764..463846Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 463765..463846 -
1622815492.4232562-CDS-P-fluviatile_contig12:464251..4645701622815492.4232562-CDS-P-fluviatile_contig12:464251..464570Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 464252..464570 -
1693562052.9677794-CDS-P-fluviatile_contig12:464251..4645701693562052.9677794-CDS-P-fluviatile_contig12:464251..464570Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 464252..464570 -
1622815492.4394317-CDS-P-fluviatile_contig12:464871..4651561622815492.4394317-CDS-P-fluviatile_contig12:464871..465156Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 464872..465156 -
1693562052.9795232-CDS-P-fluviatile_contig12:464871..4651561693562052.9795232-CDS-P-fluviatile_contig12:464871..465156Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 464872..465156 -
1622815492.4522207-CDS-P-fluviatile_contig12:465352..4658181622815492.4522207-CDS-P-fluviatile_contig12:465352..465818Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 465353..465818 -
1693562052.9904945-CDS-P-fluviatile_contig12:465352..4658181693562052.9904945-CDS-P-fluviatile_contig12:465352..465818Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 465353..465818 -
1622815492.4681966-CDS-P-fluviatile_contig12:466110..4661911622815492.4681966-CDS-P-fluviatile_contig12:466110..466191Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 466111..466191 -
1693562052.999898-CDS-P-fluviatile_contig12:466110..4661911693562052.999898-CDS-P-fluviatile_contig12:466110..466191Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 466111..466191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1350.1

>prot_P-fluviatile_contig12.1350.1 ID=prot_P-fluviatile_contig12.1350.1|Name=mRNA_P-fluviatile_contig12.1350.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=411bp
MLYPDELGVESRSLQDATLGQLVLWNVANTRLQRLPASLPWRARAQEAPA
GPAQEAASPAGAGASGAVSGRRCLLAVLLDLFHAEYRLAELACKQHGAYY
PFLAHLRDAFAIPDPTLMKDAEELWKSRHPTMTDRERAKDMRANYSNKVL
KHVPRTVPPPEVLVERFDLLIDAFKGLRDAKTGNLFLTDRLKKGIANLRP
HLQKGCPSDPDPRDVQLYFFAGRTPEGVCKFRCSRGTSGTEGYHQPIRGV
LSGFTTSPRLAHSVLLLFNYRRNHRMAVKHRGMPPEFAGWYAHWLLDDVQ
EVTAGWFSAPLFQGWGSTKNYLDTGELTGLVTARNPSDTRKELETISLSE
DWGGGNELVDPEEGEEGDSRETWGTADGMTPGARYFAQMQGSPPGQRPAT
SVKTQAEKNKF
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mRNA from alignment at P-fluviatile_contig12:463765..466191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1350.1 ID=mRNA_P-fluviatile_contig12.1350.1|Name=mRNA_P-fluviatile_contig12.1350.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2427bp|location=Sequence derived from alignment at P-fluviatile_contig12:463765..466191- (Porterinema fluviatile SAG_2381)
ATGCTGTATCCGGACGAGCTCGGCGTAGAGTCAAGGTCACTCCAGGATGC
GACCCTCGGACAACTGGTGCTCTGGAACGTGGTACGTTCGTGGGGGTTGT
ATCCCTGCTAAGTGGCATTGAGTACGCGTTGATTTATATCGCCTTCTGTG
CCGCATTCGAAATGCAGGGCTTCAGCTTGTTGTTCATCGCAGGGCTTCGG
GGCAGTGAATTGGGCAACATCTTACCCGCGGAAATCGCAGAATTTTTTTG
TATGCCTTTGCATGTGATGAAGGCAGCCTGGGGTACAATTTGTCGTTCGG
CCATGTGTGGCATGTTACAAGCTTACGGTCCGCCTTCTCTGCTTTACATG
CATGACGTCATTTCGACGGACAGGCAAATACCAGACTGCAGAGGCTTCCA
GCCTCACTCCCGTGGAGGGCCCGTGCCCAAGAGGCGCCGGCAGGCCCAGC
GCAAGAGGCGGCGTCGCCTGCCGGTGCCGGGGCGAGCGGTGCTGTCTCGG
GGCGAAGGTGCTTGCTAGCAGTCCTGCTGGATCTGTTTCACGCCGAGTAT
CGGTTGGCCGAGTTAGCCTGCAAGCAGCACGGGGCGTATTACCCGTTTCT
CGCTCACCTGCGAGACGCTTTCGCGATCCCCGACCCCACCCTGATGAAGG
ACGCGGAAGAGTTGTGGAAGAGCCGGCATCCAACGATGACGGACAGGGAA
CGTGCCAAGGATATGAGGGCCAACTACTCCAACAAGGTCCTGAAGCACGT
ACCGCGCACCGTGCCACCGCCGGAGGTTCTCGTGGAACGGTTTGACCTCC
TCATCGACGCTTTCAAAGGCCTGCGAGATGCCAAGACAGGTAAGGTACCA
ACATCGTCGACGTATCTATCGAGCTCTCGTTTCCGTTGCTCCTTCGTCTG
CGCGTACAAAGGCAAGTTTCACCAGCCGTGTTTCGTCGTGAGCTTTGCCG
TTTGCATAATGACTCTCATACTTCCCCGTCGTTTCTCTTCGCCGGCTTGT
TTTTCTCTTTCCCGGCTTCGCTTTTTTCATTGAAGGGAATTTATTCTTGA
CGGATCGTCTCAAGAAAGGCATCGCCAACCTGCGGCCCCATCTTCAAAAG
GGCTGCCCCAGCGATCCGGACCCTCGCGACGTGCAGTTGTACTTCTTTGC
TGGCCGGACACCTGAGGGGGTTTGCAAATTCCGCTGCTCGAGGGGGACAT
CCGGTACTGAGGGTTACCACCAACCTATTCGCGGTGTCCTTTCCGGCTTC
ACCACATCACCGCGCCTGGCTCATTCTGTCCTACTTCTGTTCAACTACAG
GCGGAATCACCGCATGGCAGGTGGGTTCAATGCGTGCGCAACTGTATCAT
CGAACCTCGTGCCAAATTGTAGATTCGACAAATGAGCTACGTTCGTGAGG
GAATTCGCGTTCAGCAAAAAAATCTGAAATCTTTCGTAAACCCTCCTTAG
TTTTTTTTCGTTGAACAATTGTCGGAAAAGGTCCTCATGCTCAGTACAGC
AGTTTATTGTGCCCTTCCCAGCATATTTTCTCTGAAGCTTTAAGCCTTCT
CTTGATTTTTTTGCCGGGTAAGGACTCACGTCGCCCGTTTTCGGTTCTGC
TTTTTTTTCTTGTCCCCTTAGTGAAGCATCGAGGAATGCCACCAGAGTTC
GCGGGGTGGTACGCGCATTGGCTGCTAGATGATGTGCAGGAGGTGACAGC
TGGTTGGTTCTCGGCACCACTCTTTCAAGGATGGGGTTCGACCAAGAACT
ACCTCGACACCGGGGAGCTTACCGGCCTCGTGACTGCACGGAATCCTAGC
GACACACGCAAGGAGCTGGAAACAATATCCTTGTCGGAAGATTGGGGCGG
CGGGAACGAGCTGGTGGATCCGGAAGAGGGCGAGGAGGGCGACAGCCGAG
AGACATGGGGGACTGCAGACGGAATGACACCTGGTGCTCGGTAGGTTCTT
GTATTGCCTATGTTGAATAGTCAACTGCACGATGAGTGTACTGGCATCAA
GGTATACTCCGTGAAATTGGGAGACATTTTTTTTTTCTGTGAACGTGAGT
TGAGCGGTTTTGATGCCCCTGTTCTTGATCTTCAAGTCCCCCTCCTTCGT
TCCAAATCTTGCTTCTTGTCAAGGAAGAAACCAGGGTGCATCCGCGATCA
CCCAAAATATGGTTGAATTTCTGTCTTGCCATAATTTTTCCCCCTTCTGC
CCGTCAAACTCCCACCACGTTTATCAGCGACGAGCAGTCTTCCTCAGGCT
TGCGGTATCCCCCTGTCTCTCGGAAGTTAGAGATCGTTTTCCCCCTTCTG
GGTGTGTAATGCTTTCACGTCGTGGTCTTTCGTTTGAATGGGCAGGTACT
TTGCCCAGATGCAAGGCAGTCCGCCAGGTCAGCGGCCGGCGACTAGTGTG
AAGACGCAGGCGGAAAAGAACAAGTTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:463765..466191-

>mRNA_P-fluviatile_contig12.1350.1 ID=mRNA_P-fluviatile_contig12.1350.1|Name=mRNA_P-fluviatile_contig12.1350.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2466bp|location=Sequence derived from alignment at P-fluviatile_contig12:463765..466191- (Porterinema fluviatile SAG_2381)
ATGCTGTATCCGGACGAGCTCGGCGTAGAGTCAAGGTCACTCCAGGATGC
GACCCTCGGACAACTGGTGCTCTGGAACGTGATGCTGTATCCGGACGAGC
TCGGCGTAGAGTCAAGGTCACTCCAGGATGCGACCCTCGGACAACTGGTG
CTCTGGAACGTGGCAAATACCAGACTGCAGAGGCTTCCAGCCTCACTCCC
GTGGAGGGCCCGTGCCCAAGAGGCGCCGGCAGGCCCAGCGCAAGAGGCGG
CGTCGCCTGCCGGTGCCGGGGCGAGCGGTGCTGTCTCGGGGCGAAGGTGC
TTGCTAGCAGTCCTGCTGGATCTGTTTCACGCCGAGTATCGGTTGGCCGA
GTTAGCCTGCAAGCAGCACGGGGCGTATTACCCGTTTCTCGCTCACCTGC
GAGACGCTTTCGCGATCCCCGACCCCACCCTGATGAAGGACGCGGAAGAG
TTGTGGAAGAGCCGGCATCCAACGATGACGGACAGGGAACGTGCCAAGGA
TATGAGGGCCAACTACTCCAACAAGGTCCTGAAGCACGTACCGCGCACCG
TGCCACCGCCGGAGGTTCTCGTGGAACGGTTTGACCTCCTCATCGACGCT
TTCAAAGGCCTGCGAGATGCCAAGACAGGCAAATACCAGACTGCAGAGGC
TTCCAGCCTCACTCCCGTGGAGGGCCCGTGCCCAAGAGGCGCCGGCAGGC
CCAGCGCAAGAGGCGGCGTCGCCTGCCGGTGCCGGGGCGAGCGGTGCTGT
CTCGGGGCGAAGGTGCTTGCTAGCAGTCCTGCTGGATCTGTTTCACGCCG
AGTATCGGTTGGCCGAGTTAGCCTGCAAGCAGCACGGGGCGTATTACCCG
TTTCTCGCTCACCTGCGAGACGCTTTCGCGATCCCCGACCCCACCCTGAT
GAAGGACGCGGAAGAGTTGTGGAAGAGCCGGCATCCAACGATGACGGACA
GGGAACGTGCCAAGGATATGAGGGCCAACTACTCCAACAAGGTCCTGAAG
CACGTACCGCGCACCGTGCCACCGCCGGAGGTTCTCGTGGAACGGTTTGA
CCTCCTCATCGACGCTTTCAAAGGCCTGCGAGATGCCAAGACAGGGAATT
TATTCTTGACGGATCGTCTCAAGAAAGGCATCGCCAACCTGCGGCCCCAT
CTTCAAAAGGGCTGCCCCAGCGATCCGGACCCTCGCGACGTGCAGTTGTA
CTTCTTTGCTGGCCGGACACCTGAGGGGGTTTGCAAATTCCGCTGCTCGA
GGGGGACATCCGGTACTGAGGGTTACCACCAACCTATTCGCGGTGTCCTT
TCCGGCTTCACCACATCACCGCGCCTGGCTCATTCTGTCCTACTTCTGTT
CAACTACAGGCGGAATCACCGCATGGCAGGGAATTTATTCTTGACGGATC
GTCTCAAGAAAGGCATCGCCAACCTGCGGCCCCATCTTCAAAAGGGCTGC
CCCAGCGATCCGGACCCTCGCGACGTGCAGTTGTACTTCTTTGCTGGCCG
GACACCTGAGGGGGTTTGCAAATTCCGCTGCTCGAGGGGGACATCCGGTA
CTGAGGGTTACCACCAACCTATTCGCGGTGTCCTTTCCGGCTTCACCACA
TCACCGCGCCTGGCTCATTCTGTCCTACTTCTGTTCAACTACAGGCGGAA
TCACCGCATGGCAGTGAAGCATCGAGGAATGCCACCAGAGTTCGCGGGGT
GGTACGCGCATTGGCTGCTAGATGATGTGCAGGAGGTGACAGCTGGTTGG
TTCTCGGCACCACTCTTTCAAGGATGGGGTTCGACCAAGAACTACCTCGA
CACCGGGGAGCTTACCGGCCTCGTGACTGCACGGAATCCTAGCGACACAC
GCAAGGAGCTGGAAACAATATCCTTGTCGGAAGATTGGGGCGGCGGGAAC
GAGCTGGTGGATCCGGAAGAGGGCGAGGAGGGCGACAGCCGAGAGACATG
GGGGACTGCAGACGGAATGACACCTGGTGCTCGTGAAGCATCGAGGAATG
CCACCAGAGTTCGCGGGGTGGTACGCGCATTGGCTGCTAGATGATGTGCA
GGAGGTGACAGCTGGTTGGTTCTCGGCACCACTCTTTCAAGGATGGGGTT
CGACCAAGAACTACCTCGACACCGGGGAGCTTACCGGCCTCGTGACTGCA
CGGAATCCTAGCGACACACGCAAGGAGCTGGAAACAATATCCTTGTCGGA
AGATTGGGGCGGCGGGAACGAGCTGGTGGATCCGGAAGAGGGCGAGGAGG
GCGACAGCCGAGAGACATGGGGGACTGCAGACGGAATGACACCTGGTGCT
CGGTACTTTGCCCAGATGCAAGGCAGTCCGCCAGGTCAGCGGCCGGCGAC
TAGTGTGAAGACGCAGGCGGAAAAGAACAAGTTCGTACTTTGCCCAGATG
CAAGGCAGTCCGCCAGGTCAGCGGCCGGCGACTAGTGTGAAGACGCAGGC
GGAAAAGAACAAGTTC
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