mRNA_P-fluviatile_contig12.1338.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1338.1
Unique NamemRNA_P-fluviatile_contig12.1338.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 5.440e-53
Identity = 87/122 (71.31%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGG--RRPKVILTDADLAMTAAIASCWPDTLHLHC 360
            MY  +T D  GRLV+VFW+T +QQ   ARFGGCIQ+DTTVF NRYGCP+   VGVDDENRSCILGQGLLRSEC +TFEW L +YE+AAGG  RRPKVILTDAD+AMT+A+AS W  T HL C
Sbjct:   28 MYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVFLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKVILTDADVAMTSAVASVWKGTQHLFC 149
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 5.450e-52
Identity = 87/122 (71.31%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGG--RRPKVILTDADLAMTAAIASCWPDTLHLHC 360
            MY  +T D  GRLV+VFW+T +QQ   ARFGGCIQ+DTTVF NRYGCP+L  VGVDDENRSCILGQGLLRSEC +TFEW L +YE+AAGG  RRPKVILTDAD+AMT+A+ S W  T HL C
Sbjct:  277 MYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKVILTDADVAMTSAVPSVWKGTQHLFC 398
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.170e-51
Identity = 94/120 (78.33%), Postives = 95/120 (79.17%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHLHC 360
            MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTN   C   F        R C         +CTQTFE MLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHLHC
Sbjct:  199 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNS-ACFCAFW------GRDCC-------GQCTQTFERMLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHLHC 304
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5L3G4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G4_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 8.220e-49
Identity = 76/120 (63.33%), Postives = 99/120 (82.50%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHLHC 360
            M+   T D+ GR+VDVFW+T++QQ  +A FGGCIQ++TTVFTNR+GCPLLF+VGVDDENR+C+LGQG+LRSE T++F+W ++ YE AAGGRRPKV+LTD D AM +A+   W  T+HL C
Sbjct:  358 MFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMETTVFTNRHGCPLLFIVGVDDENRTCVLGQGMLRSESTESFKWFVDSYEKAAGGRRPKVMLTDTDQAMASALRE-WKTTVHLRC 476
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 4.960e-46
Identity = 77/120 (64.17%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHLHC 360
            M+ +   D+ GRL +VFW+T++QQ  IAR+G CIQ+DTTVF NRYGCPLLF+VGVDDENRSCIL Q LLRSECT+TF+W+L  ++ A+G RRPKV LTD + AMTAA+   W  TLHL+C
Sbjct:   47 MFVEREFDSIGRLENVFWATVDQQNKIARYGACIQMDTTVFMNRYGCPLLFIVGVDDENRSCILAQCLLRSECTETFKWILTSWDGASGDRRPKVFLTDGEKAMTAALRG-WKTTLHLYC 165
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5KDA0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA0_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 8.760e-46
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGGRRPKVILTDADLA 309
            M+   T D+ GR+VDVFW+T++QQ  +A FGGCIQ+DTTVFTNRYGCPLLF+VGVDDENR C+L QG+LRSE T+TF+W L+ YE AAGGRRPKV+LTDAD A
Sbjct:  342 MFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMDTTVFTNRYGCPLLFIVGVDDENRMCVLRQGVLRSESTKTFKWFLDSYEEAAGGRRPKVMLTDADQA 444
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 3.440e-44
Identity = 76/118 (64.41%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHL 354
            M+   T D+ GR+VDVFW+T++QQ  +A  G C+Q+DTTVFT+RYGCPLLF+VGVDDENR+C+LGQG+LRSE T+TF+W L+ YE AAGGRRPKV+LTDAD AM AA+   W   +HL
Sbjct:  374 MFVKRTFDSLGRIVDVFWATVDQQDKMAATG-CMQMDTTVFTDRYGCPLLFIVGVDDENRTCVLGQGVLRSESTETFKWFLDSYEEAAGGRRPKVMLTDADQAMAAALRE-WKTIVHL 489
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5KR58_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR58_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.850e-40
Identity = 71/120 (59.17%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHLHC 360
            M+   T D+ GR+VDVFW+T++QQ  +A FGGCIQ+DTT FTNRYGCPLLF+VGVDDENRSC+LGQG+LRSE T+TF     R  +        V+LTDAD AM AA+   W  T+HL C
Sbjct:  301 MFVKRTFDSLGRIVDVFWATVDQQDKMATFGGCIQMDTTAFTNRYGCPLLFIVGVDDENRSCVLGQGVLRSESTETFSGSWTRTRSCWWTEAKGVMLTDADQAMAAALRE-WKTTVHLWC 419
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 3.010e-39
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGG--RRPKV 285
            MY  +  D  GRLV+VFW+T +QQ   ARFGGCIQ+DTTVF NRYGCP+L  VGVDDENRSCILGQGLLRSEC +TFEW L +YE+AAGG  RRPK+
Sbjct:  244 MYVANIFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKM 340
[Close]
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 8.560e-39
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLLFVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGG--RRPK 282
            MY  +T D  GRLV+VFW+T +QQ   ARFGGCIQ+DTTVF NRY CP+L  VGVDDENRSCILGQGLLRSEC +TFEW L +YE+AAGG  RRPK
Sbjct:  975 MYVANTFDDPGRLVNVFWATADQQERAARFGGCIQMDTTVFANRYRCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPK 1070
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAB1_9PHAE5.440e-5371.31SWIM-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KG54_9PHAE5.450e-5271.31SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWM8_9PHAE1.170e-5178.33MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L3G4_9PHAE8.220e-4963.33MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L618_9PHAE4.960e-4664.17MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KDA0_9PHAE8.760e-4670.87MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZB4_9PHAE3.440e-4464.41SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KR58_9PHAE1.850e-4059.17MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JP13_9PHAE3.010e-3971.13SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JGK0_9PHAE8.560e-3971.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:387848..388689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.1
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog4558.Sb01g045140.1
KEGG koko:K17604
EggNOG free text desc.Protein FAR1-RELATED SEQUENCE 5-like
EggNOG OGs28K6Z@1,2QSMI@2759,37QJE@33090,3GANB@35493,3IUEQ@38820,3KXVX@4447
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size364
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1338.1prot_P-fluviatile_contig12.1338.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 387848..388689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.042351-CDS-P-fluviatile_contig12:387847..3879781622815492.042351-CDS-P-fluviatile_contig12:387847..387978Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 387848..387978 +
1693562052.7540421-CDS-P-fluviatile_contig12:387847..3879781693562052.7540421-CDS-P-fluviatile_contig12:387847..387978Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 387848..387978 +
1622815492.0543878-CDS-P-fluviatile_contig12:388197..3883481622815492.0543878-CDS-P-fluviatile_contig12:388197..388348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 388198..388348 +
1693562052.7637863-CDS-P-fluviatile_contig12:388197..3883481693562052.7637863-CDS-P-fluviatile_contig12:388197..388348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 388198..388348 +
1622815492.068952-CDS-P-fluviatile_contig12:388608..3886891622815492.068952-CDS-P-fluviatile_contig12:388608..388689Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 388609..388689 +
1693562052.7717187-CDS-P-fluviatile_contig12:388608..3886891693562052.7717187-CDS-P-fluviatile_contig12:388608..388689Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 388609..388689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1338.1

>prot_P-fluviatile_contig12.1338.1 ID=prot_P-fluviatile_contig12.1338.1|Name=mRNA_P-fluviatile_contig12.1338.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=121bp
MYCDHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNRYGCPLL
FVVGVDDENRSCILGQGLLRSECTQTFEWMLNRYETAAGGRRPKVILTDA
DLAMTAAIASCWPDTLHLHCW
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mRNA from alignment at P-fluviatile_contig12:387848..388689+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1338.1 ID=mRNA_P-fluviatile_contig12.1338.1|Name=mRNA_P-fluviatile_contig12.1338.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=842bp|location=Sequence derived from alignment at P-fluviatile_contig12:387848..388689+ (Porterinema fluviatile SAG_2381)
ATGTACTGCGACCACACACTGGATGCCCAGGGGAGACTGGTGGATGTTTT
TTGGTCCACCATCGAACAGCAAGCCCACATTGCAAGATTTgGGGGGTGCA
TCCAGCTGGACACGACGGTGTTCACTAACAGGTACAAACATTATTGAACC
TCTGCGAGTGGTTGCTTGTCTCGACGGCAAATTCAGCTGGTGAGAGGGTG
TCAACGCCAGCCTGCGTATTGTGCAACTCCACAAACCATTGCAACCCCAA
ATGCCTTGGCGACAGATATGTGTTCTGCTAGCAACAGTATAACAGTGCTT
GCTTATGTAAGCCGGACTGATGTGCTCGGGCTGACCGCCTTCCTCTTTAG
GTACGGGTGCCCGCTTCTGTTCGTCGTCGGCGTCGACGACGAAAATCGCA
GCTGCATTTTGGGGCAGGGATTGCTGCGGTCAGAGTGTACACAAACATTC
GAGTGGATGCTCAACAGATATGAAACTGCTGCCGGTGGGCGGAGGCCGAA
GGTGACCCTAACATCATGTCCGTATCATGTGGGGTTAGGGTGGTCCTTGA
ATGCTTTGGTACGGAGTCAGGATGATGTACAACAATACCATGCCTTTAGC
GACAGGAACAAAGTGACTTTCATTTTCTGCCACCGCTAAGTCGAGCTGTG
TGAACGACCAGGAGCTGTGTGGACAACCAGGAGCTTCTCCATGTGCTGGC
AACATCAGCGAGTTATTCCACCTATCATCAACGACACGCTTTTCGTTTGT
CTTTCCCACAGGTAATCTTGACCGATGCTGATCTTGCGATGACCGCTGCA
ATAGCCTCCTGTTGGCCAGACACGCTGCATTTGCACTGCTGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:387848..388689+

>mRNA_P-fluviatile_contig12.1338.1 ID=mRNA_P-fluviatile_contig12.1338.1|Name=mRNA_P-fluviatile_contig12.1338.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig12:387848..388689+ (Porterinema fluviatile SAG_2381)
ATGTACTGCGACCACACACTGGATGCCCAGGGGAGACTGGTGGATGTTTT
TTGGTCCACCATCGAACAGCAAGCCCACATTGCAAGATTTgGGGGGTGCA
TCCAGCTGGACACGACGGTGTTCACTAACAGATGTACTGCGACCACACAC
TGGATGCCCAGGGGAGACTGGTGGATGTTTTTTGGTCCACCATCGAACAG
CAAGCCCACATTGCAAGATTTgGGGGGTGCATCCAGCTGGACACGACGGT
GTTCACTAACAGGTACGGGTGCCCGCTTCTGTTCGTCGTCGGCGTCGACG
ACGAAAATCGCAGCTGCATTTTGGGGCAGGGATTGCTGCGGTCAGAGTGT
ACACAAACATTCGAGTGGATGCTCAACAGATATGAAACTGCTGCCGGTGG
GCGGAGGCCGAAGGTACGGGTGCCCGCTTCTGTTCGTCGTCGGCGTCGAC
GACGAAAATCGCAGCTGCATTTTGGGGCAGGGATTGCTGCGGTCAGAGTG
TACACAAACATTCGAGTGGATGCTCAACAGATATGAAACTGCTGCCGGTG
GGCGGAGGCCGAAGGTAATCTTGACCGATGCTGATCTTGCGATGACCGCT
GCAATAGCCTCCTGTTGGCCAGACACGCTGCATTTGCACTGCTGGGTAAT
CTTGACCGATGCTGATCTTGCGATGACCGCTGCAATAGCCTCCTGTTGGC
CAGACACGCTGCATTTGCACTGCTGG
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