mRNA_P-fluviatile_contig76.14122.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14122.1
Unique NamemRNA_P-fluviatile_contig76.14122.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:566446..567180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size735
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14122.1prot_P-fluviatile_contig76.14122.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 566591..567007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.982398-UTR-P-fluviatile_contig76:566445..5665901622817190.982398-UTR-P-fluviatile_contig76:566445..566590Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 566446..566590 +
1693571455.1668847-UTR-P-fluviatile_contig76:566445..5665901693571455.1668847-UTR-P-fluviatile_contig76:566445..566590Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 566446..566590 +
1622817191.0060065-UTR-P-fluviatile_contig76:567007..5671801622817191.0060065-UTR-P-fluviatile_contig76:567007..567180Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 567008..567180 +
1693571455.3062446-UTR-P-fluviatile_contig76:567007..5671801693571455.3062446-UTR-P-fluviatile_contig76:567007..567180Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 567008..567180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.9949975-CDS-P-fluviatile_contig76:566590..5670071622817190.9949975-CDS-P-fluviatile_contig76:566590..567007Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 566591..567007 +
1693571455.1766367-CDS-P-fluviatile_contig76:566590..5670071693571455.1766367-CDS-P-fluviatile_contig76:566590..567007Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 566591..567007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14122.1

>prot_P-fluviatile_contig76.14122.1 ID=prot_P-fluviatile_contig76.14122.1|Name=mRNA_P-fluviatile_contig76.14122.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=139bp
MSRPSTRTIRASSAPFATTSATPISFAHSDAPLMRRPETSCRSTRTAASS
PHPHRKVPRPRVISNVARLLIAVRTHPAAAAAAFVNFVRAAVGAGCASRP
TPVAAAAAAAVGHATAAGAAGAAGAAAAATAPREGVRE*
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mRNA from alignment at P-fluviatile_contig76:566446..567180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14122.1 ID=mRNA_P-fluviatile_contig76.14122.1|Name=mRNA_P-fluviatile_contig76.14122.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=735bp|location=Sequence derived from alignment at P-fluviatile_contig76:566446..567180+ (Porterinema fluviatile SAG_2381)
AGCAGCTGGACGCGAGAACAACAGGGGTGACAGGTACGGCGGGGGTCCCG
GGGGTGCAGCCGGTGTGCATCACCTTAGCGTCTACCCTGCTCTCGGAGGC
TGACTACGCCCGATACCCGCCAAACCTTCGCCGCCCCTCTTGGCAATGAG
CCGCCCATCCACGCGAACGATCCGCGCAAGCAGTGCACCATTTGCGACCA
CCTCGGCCACACCCATTTCTTTTGCCCATTCCGACGCGCCCTTGATGCGG
CGCCCCGAAACCAGCTGCCGCAGCACTCGTACGGCTGCTTCGTCGCCTCA
TCCACATCGGAAAGTGCCCCGACCTCGGGTGATCAGCAATGTTGCACGCC
TTCTCATCGCAGTCCGCACTCATCCAGCAGCAGCAGCAGCAGCTTTCGTC
AACTTCGTTCGGGCAGCAGTCGGCGCAGGATGCGCGAGTCGTCCCACACC
AGTGGCAGCAGCTGCTGCAGCAGCAGTGGGCCATGCAACGGCAGCAGGAG
CAGCAGGAGCAGCAGGAGCAGCAGCAGCAGCAACAGCCCCTAGGGAGGGT
GTCCGTGAGTAGCGGCAGTAGTATCGAGCTGATAGGTTGATTCAAATGGT
GGGACTGTCTGTAGAAGGGGCTGTGAGGTCTGCGCTGTCATATTCTGACG
TGTTGTGTGACGTGTTTTGTAGTCTGAGCTGGTCTTCGCTGTGTGCGAGT
CCCCCTCGCACACAGCTCGCCCACCTGCTCACTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:566446..567180+

>mRNA_P-fluviatile_contig76.14122.1 ID=mRNA_P-fluviatile_contig76.14122.1|Name=mRNA_P-fluviatile_contig76.14122.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=834bp|location=Sequence derived from alignment at P-fluviatile_contig76:566446..567180+ (Porterinema fluviatile SAG_2381)
ATGAGCCGCCCATCCACGCGAACGATCCGCGCAAGCAGTGCACCATTTGC
GACCACCTCGGCCACACCCATTTCTTTTGCCCATTCCGACGCGCCCTTGA
TGCGGCGCCCCGAAACCAGCTGCCGCAGCACTCGTACGGCTGCTTCGTCG
CCTCATCCACATCGGAAAGTGCCCCGACCTCGGGTGATCAGCAATGTTGC
ACGCCTTCTCATCGCAGTCCGCACTCATCCAGCAGCAGCAGCAGCAGCTT
TCGTCAACTTCGTTCGGGCAGCAGTCGGCGCAGGATGCGCGAGTCGTCCC
ACACCAGTGGCAGCAGCTGCTGCAGCAGCAGTGGGCCATGCAACGGCAGC
AGGAGCAGCAGGAGCAGCAGGAGCAGCAGCAGCAGCAACAGCCCCTAGGG
AGGGTGTCCGTGAGTAGATGAGCCGCCCATCCACGCGAACGATCCGCGCA
AGCAGTGCACCATTTGCGACCACCTCGGCCACACCCATTTCTTTTGCCCA
TTCCGACGCGCCCTTGATGCGGCGCCCCGAAACCAGCTGCCGCAGCACTC
GTACGGCTGCTTCGTCGCCTCATCCACATCGGAAAGTGCCCCGACCTCGG
GTGATCAGCAATGTTGCACGCCTTCTCATCGCAGTCCGCACTCATCCAGC
AGCAGCAGCAGCAGCTTTCGTCAACTTCGTTCGGGCAGCAGTCGGCGCAG
GATGCGCGAGTCGTCCCACACCAGTGGCAGCAGCTGCTGCAGCAGCAGTG
GGCCATGCAACGGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGCAGC
AGCAACAGCCCCTAGGGAGGGTGTCCGTGAGTAG
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