mRNA_P-fluviatile_contig76.14091.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14091.1
Unique NamemRNA_P-fluviatile_contig76.14091.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:296340..297343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.4143174-CDS-P-fluviatile_contig76:296339..2965481622817190.4143174-CDS-P-fluviatile_contig76:296339..296548Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 296340..296548 +
1693571453.329603-CDS-P-fluviatile_contig76:296339..2965481693571453.329603-CDS-P-fluviatile_contig76:296339..296548Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 296340..296548 +
1622817190.4257786-CDS-P-fluviatile_contig76:297243..2973431622817190.4257786-CDS-P-fluviatile_contig76:297243..297343Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 297244..297343 +
1693571453.3416522-CDS-P-fluviatile_contig76:297243..2973431693571453.3416522-CDS-P-fluviatile_contig76:297243..297343Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 297244..297343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14091.1prot_P-fluviatile_contig76.14091.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 296340..297343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14091.1

>prot_P-fluviatile_contig76.14091.1 ID=prot_P-fluviatile_contig76.14091.1|Name=mRNA_P-fluviatile_contig76.14091.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
PREDIETRPQLLRVQHRSLWVFGKQAFPPQSTSCGRLPRHGQLLGLRDLR
PQRGVRGLRYRAQARQRQAHLSQRSREARGLPWEKGREARWRTGVRQLHP
RP*
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mRNA from alignment at P-fluviatile_contig76:296340..297343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14091.1 ID=mRNA_P-fluviatile_contig76.14091.1|Name=mRNA_P-fluviatile_contig76.14091.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1004bp|location=Sequence derived from alignment at P-fluviatile_contig76:296340..297343+ (Porterinema fluviatile SAG_2381)
CCGCGAGAAGACATCGAAACGCGGCCTCAATTACTACGAGTGCAACATCG
TAGCCTGTGGGTTTTTGGGAAGCAAGCTTTTCCCCCCCAAAGCACGAGTT
GCGGCAGGTTACCAAGACACGGGCAGCTGCTTGGTCTGCGGGACCTTCGT
CCACAGCGTGGTGTCCGTGGGCTTCGATACAGGGCGCAAGCACGCCAGCG
GCAGGCGCAGTAAGTTCCTTTCGTTCGTGGCAGGTATTTTTTTGTCCTGC
TCCTGTTTGTAAAGTGCTCTTTTTTCTCTTCCGACTGTGGAAAGGGTGTT
TGCCCGACGTGAGATAAGGTACCCCAAGCCTTATATACTGACATGTGGTG
GTACCCACATACCCCCCCGGATACGAGCGAGCGGACAGCTCAGCATCGTA
GACAAATACGCGGGTACCACGACGCACCCCCCGTAGCATGTACGGTAACC
GGAACCCGACCGGCTGGCGGCGGACAAAAAAACACTTTCACGTGCCCGGA
TTCGAACCCGGGACTTCAACATTGCAGGGGTGACAATCCTGCCGTCGACG
CCACTTGTGAAAAGGGTGTTTGCCCGACGTGAGATAAGGTGCCCCAAGCC
TTATATACTGACATGTGGTGGTACCCACACGACGCGTTGTTTGTAAACCG
CTGTATCCCAAGGTTTCGGTCCTGCTCCGGTATGTTCACCGCTGTTTTCC
CGTTTCCTGGGCGCGTTGTTTCCCAACTAATACATCCTTTCCCCACCAAA
ATGCACATCGACATTCACCCCACGTTTTTCTCTATTTTTTTGCTCCTCTG
TCTGCACGATATACTTCCTTTTACCACCAATAAATCTACTAGTCAAGTGC
ACAGCCAACGCCCACGCGACACTTTTCCTTCACCGTGCGTTTCCGTACCG
CCAGTTTATCACAACGTTCACGCGAGGCACGAGGACTGCCTTGGGAAAAA
GGTCGCGAAGCCAGGTGGAGGACTGGTGTTCGCCAACTCCACCCCCGCCC
CTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:296340..297343+

>mRNA_P-fluviatile_contig76.14091.1 ID=mRNA_P-fluviatile_contig76.14091.1|Name=mRNA_P-fluviatile_contig76.14091.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig76:296340..297343+ (Porterinema fluviatile SAG_2381)
CCGCGAGAAGACATCGAAACGCGGCCTCAATTACTACGAGTGCAACATCG
TAGCCTGTGGGTTTTTGGGAAGCAAGCTTTTCCCCCCCAAAGCACGAGTT
GCGGCAGGTTACCAAGACACGGGCAGCTGCTTGGTCTGCGGGACCTTCGT
CCACAGCGTGGTGTCCGTGGGCTTCGATACAGGGCGCAAGCACGCCAGCG
GCAGGCGCACCGCGAGAAGACATCGAAACGCGGCCTCAATTACTACGAGT
GCAACATCGTAGCCTGTGGGTTTTTGGGAAGCAAGCTTTTCCCCCCCAAA
GCACGAGTTGCGGCAGGTTACCAAGACACGGGCAGCTGCTTGGTCTGCGG
GACCTTCGTCCACAGCGTGGTGTCCGTGGGCTTCGATACAGGGCGCAAGC
ACGCCAGCGGCAGGCGCATTTATCACAACGTTCACGCGAGGCACGAGGAC
TGCCTTGGGAAAAAGGTCGCGAAGCCAGGTGGAGGACTGGTGTTCGCCAA
CTCCACCCCCGCCCCTAATTTATCACAACGTTCACGCGAGGCACGAGGAC
TGCCTTGGGAAAAAGGTCGCGAAGCCAGGTGGAGGACTGGTGTTCGCCAA
CTCCACCCCCGCCCCTAA
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