mRNA_P-fluviatile_contig75.14028.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig75.14028.1
Unique NamemRNA_P-fluviatile_contig75.14028.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.620e-33
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LNDMN+PYYSAPTVFHCDAFNAFGMGCKH+IGG YFGWAWRTPAVQRLKHQTHVG
Sbjct:   80 LNDMNMPYYSAPTVFHCDAFNAFGMGCKHSIGGSYFGWAWRTPAVQRLKHQTHVG 134
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 9.310e-32
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LN+MNLPYYSAPTVFHCDAFNAFGMGCKH+IGG YFGWAWRTPAVQRLKHQTHVG
Sbjct:  514 LNNMNLPYYSAPTVFHCDAFNAFGMGCKHSIGGSYFGWAWRTPAVQRLKHQTHVG 568
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.330e-31
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LNDMNLPYYSAPTVFHCDAFNAFGMGCKH+IGG YFGWAWRTPAVQRL H+THVG
Sbjct:  224 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHSIGGSYFGWAWRTPAVQRLNHRTHVG 278
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.490e-29
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LNDMNLPYYSA TVFHCDA NAFGMGCKH+IGG  FGWAWRTPAVQRLKHQTHVG
Sbjct:  388 LNDMNLPYYSASTVFHCDAINAFGMGCKHSIGGSCFGWAWRTPAVQRLKHQTHVG 442
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.880e-25
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 NDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            ND +LP++SA  VF+CDAFNAFGMGCKH++GG YFGWAWR PAVQRLKHQ+HVG
Sbjct:  601 NDTDLPFFSASLVFNCDAFNAFGMGCKHSVGGSYFGWAWRAPAVQRLKHQSHVG 654
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.840e-24
Identity = 53/103 (51.46%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCK------------------------------------------------HAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LNDMNLPYYSAPTVFHCDAFNAFGMGCK                                                H+IGG YFGWAWRTPAVQRLKHQTHVG
Sbjct:  523 LNDMNLPYYSAPTVFHCDAFNAFGMGCKVSVWTTILMLLRDVPPDLTPSGGDKFAIAYRDSPILRLCTCMRCCGSQHSIGGSYFGWAWRTPAVQRLKHQTHVG 625
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.460e-23
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LNDMNL +YSAP VF CDAFNA+G+G KH+IGG YFGW WR+ AVQRLK+QTHVG
Sbjct:  266 LNDMNLAFYSAPVVFSCDAFNAWGLGNKHSIGGSYFGWGWRSQAVQRLKNQTHVG 320
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-22
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LNDMNL +YSAP VF CDAFNA+G+G KH+IGG YF W WR+ AVQRLK+QTHVG
Sbjct:   32 LNDMNLAFYSAPVVFSCDAFNAWGLGNKHSIGGSYFDWGWRSQAVQRLKNQTHVG 86
[Close]
BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.940e-20
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LN+ NL ++SAP  F+ DAFN FGMG KH++GG YFGW WRT AVQRLK QTHVG
Sbjct:  500 LNNENLAFFSAPVTFYNDAFNCFGMGNKHSVGGGYFGWPWRTQAVQRLKRQTHVG 554
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BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Match: D7G2D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D4_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.090e-18
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 LNDMNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTHVG 165
            LN+ NL ++  P  F+ DAFN FGMG KH++GG YFGW WRT AVQRLK QTHVG
Sbjct:  124 LNNENLAFFLTPVTFYNDAFNCFGMGNKHSVGGGYFGWPWRTQAVQRLKRQTHVG 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig75.14028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KU21_9PHAE6.620e-3394.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE9.310e-3294.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX1_9PHAE2.330e-3192.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ8_9PHAE2.490e-2990.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE3.880e-2577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE1.840e-2451.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML3_9PHAE3.460e-2376.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE3.660e-2274.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWC0_9PHAE9.940e-2069.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2D4_ECTSI2.090e-1865.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig75contigP-fluviatile_contig75:289048..289405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig75.14028.1prot_P-fluviatile_contig75.14028.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig75 289048..289396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817186.220688-CDS-P-fluviatile_contig75:289047..2891281622817186.220688-CDS-P-fluviatile_contig75:289047..289128Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 289048..289128 -
1693571436.4797568-CDS-P-fluviatile_contig75:289047..2891281693571436.4797568-CDS-P-fluviatile_contig75:289047..289128Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 289048..289128 -
1622817186.232436-CDS-P-fluviatile_contig75:289321..2893961622817186.232436-CDS-P-fluviatile_contig75:289321..289396Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 289322..289396 -
1693571436.4904287-CDS-P-fluviatile_contig75:289321..2893961693571436.4904287-CDS-P-fluviatile_contig75:289321..289396Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 289322..289396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817186.2471194-UTR-P-fluviatile_contig75:289396..2894051622817186.2471194-UTR-P-fluviatile_contig75:289396..289405Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 289397..289405 -
1693571436.504779-UTR-P-fluviatile_contig75:289396..2894051693571436.504779-UTR-P-fluviatile_contig75:289396..289405Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 289397..289405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig75.14028.1

>prot_P-fluviatile_contig75.14028.1 ID=prot_P-fluviatile_contig75.14028.1|Name=mRNA_P-fluviatile_contig75.14028.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=52bp
MNLPYYSAPTVFHCDAFNAFGMGCKHAIGGPYFGWAWRTPAVQRLKHQTH
VG
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mRNA from alignment at P-fluviatile_contig75:289048..289405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig75.14028.1 ID=mRNA_P-fluviatile_contig75.14028.1|Name=mRNA_P-fluviatile_contig75.14028.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=358bp|location=Sequence derived from alignment at P-fluviatile_contig75:289048..289405- (Porterinema fluviatile SAG_2381)
CTCAACGACATGAATCTGCCCTACTACTCCGCGCCGACGGTGTTTCACTG
CGATGCATTCAACGCCTTTGGAATGGGTTGCAAGGTGAGCGTGGGTTTTG
AGATGGTTTCGCGCGAAGATATCGGAATGTGTATCACACACACAGGACCA
CCATCCTTATGTTATTGCGGGACGTCCCCCAGATCTAACCCCGAGCGGGG
GTGATAAATTCGCAATAGCTTACCGTGATTCCCCCATCCTTCGTTTATGC
ACATGCATGCGATGTTGTGGTTCGCAGCATGCCATAGGAGGGCCCTACTT
TGGATGGGCTTGGCGAACGCCAGCGGTTCAGCGGTTGAAACATCAAACGC
ATGTCGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig75:289048..289405-

>mRNA_P-fluviatile_contig75.14028.1 ID=mRNA_P-fluviatile_contig75.14028.1|Name=mRNA_P-fluviatile_contig75.14028.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=312bp|location=Sequence derived from alignment at P-fluviatile_contig75:289048..289405- (Porterinema fluviatile SAG_2381)
ATGAATCTGCCCTACTACTCCGCGCCGACGGTGTTTCACTGCGATGCATT
CAACGCCTTTGGAATGGGTTGCAAGATGAATCTGCCCTACTACTCCGCGC
CGACGGTGTTTCACTGCGATGCATTCAACGCCTTTGGAATGGGTTGCAAG
CATGCCATAGGAGGGCCCTACTTTGGATGGGCTTGGCGAACGCCAGCGGT
TCAGCGGTTGAAACATCAAACGCATGTCGGCCATGCCATAGGAGGGCCCT
ACTTTGGATGGGCTTGGCGAACGCCAGCGGTTCAGCGGTTGAAACATCAA
ACGCATGTCGGC
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