mRNA_P-fluviatile_contig75.14027.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig75.14027.1
Unique NamemRNA_P-fluviatile_contig75.14027.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5KI50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI50_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.810e-21
Identity = 56/128 (43.75%), Postives = 60/128 (46.88%), Query Frame = 1 
Query:    1 MGRTGSRPTIHSILHAVEAIRLHGICPDASKGEHTHQ-----------------------------------------------------------------SLASFLGHDRVPTDIHAEAVQTPAQL 189
            MGRTGSRPTIHS+LHAVEAIRLHG+CPDAS GEH HQ                                                                 SLASFLGH RVPTDIHA+A+QTPAQL
Sbjct:  217 MGRTGSRPTIHSMLHAVEAIRLHGVCPDASTGEHAHQMNKSGKAVDCGRMPSLHMAKRANVNSALVALSNGLPYRITKYNRSSNAHEVVSVKPGAGCVQLMQSLASFLGHARVPTDIHAKAIQTPAQL 344
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BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.890e-21
Identity = 56/128 (43.75%), Postives = 60/128 (46.88%), Query Frame = 1 
Query:    1 MGRTGSRPTIHSILHAVEAIRLHGICPDASKGEHTHQ-----------------------------------------------------------------SLASFLGHDRVPTDIHAEAVQTPAQL 189
            MGRTGSRPTIHS+LHAVEAIRLHG+CPDAS GEH HQ                                                                 SLASFLGH RVPTDIHA+A+QTPAQL
Sbjct:  404 MGRTGSRPTIHSMLHAVEAIRLHGVCPDASTGEHAHQMNKSGKAVDCGRMPSLHMAKRANVNLALVALSNGLPYRITKYNRSFNAHEAVSVKPGAGCVQLMQSLASFLGHARVPTDIHAKAIQTPAQL 531
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BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5KNJ3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.960e-20
Identity = 60/129 (46.51%), Postives = 60/129 (46.51%), Query Frame = 1 
Query:    1 MGRTGSRPTIHSILHAVEAIRLHGICPDASKGEHTHQ-----------------------------------------------------------------SLASFLGHDRVPTDIHAEAVQTPAQLS 192
            MGRTGSRPTIHSILHAVEAIR   ICPDAS GEHTHQ                                                                 SLASFLGHDRVPTDIHAEAVQTPAQLS
Sbjct:   17 MGRTGSRPTIHSILHAVEAIR---ICPDASTGEHTHQVNKSGRGVDCGRSPSLHMAKRANVNSAFLALSNGLPYRVTKYNRQTKMHEIVTVRPGDGCVRLMQSLASFLGHDRVPTDIHAEAVQTPAQLS 142
[Close]
BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.130e-19
Identity = 55/128 (42.97%), Postives = 57/128 (44.53%), Query Frame = 1 
Query:    1 MGRTGSRPTIHSILHAVEAIRLHGICPDASKGEHTHQ-----------------------------------------------------------------SLASFLGHDRVPTDIHAEAVQTPAQL 189
            MGRTGSRPTIHSILH VE IRLHG+CPDAS  EHTHQ                                                                 SLAS +GHD VPTDIHAEAVQTPAQL
Sbjct:  970 MGRTGSRPTIHSILHTVETIRLHGLCPDASTCEHTHQTNKSGRSVDCGRNPSKHMAQRANVNSALLALSNGLPYSVTRYNRQDRVHEIVSVRPGDGCVRLMKSLASLVGHDGVPTDIHAEAVQTPAQL 1097
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BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5KRP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.300e-14
Identity = 48/106 (45.28%), Postives = 53/106 (50.00%), Query Frame = 1 
Query:    1 MGRTGSRPTIHSILHAVEAIRLHGICPDAS----------------------------KGEHTH---------------QSLASFLGHDRVPTDIHAEAVQTPAQL 189
            MGRTGSRPTIHSILH VEA RLH    + S                            + +  H               QSLASFLGH+RVPTDIHAEAVQTP+QL
Sbjct:    1 MGRTGSRPTIHSILHTVEATRLHDCGRNPSLHMAKRANLNSALLALSNGLPYRVARYNRRDRVHEIVSVHPDDGCVRIMQSLASFLGHNRVPTDIHAEAVQTPSQL 106
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BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.700e-11
Identity = 44/128 (34.38%), Postives = 48/128 (37.50%), Query Frame = 1 
Query:    1 MGRTGSRPTIHSILHAVEAIRLHGICPDASKGEHTHQS-----------------------------------------------------------------LASFLGHDRVPTDIHAEAVQTPAQL 189
            +GRTGSRPTIHS+LH  +AIR HGI PDAS GE  HQ                                                                  LA  LGHDRVPTD+HA    T AQL
Sbjct:  677 LGRTGSRPTIHSVLHTSQAIRAHGIVPDASSGEFAHQQNKSGNKSDCGRNPPKHYIKRANTNAAMLALANGLEYRVRKYNFSKQEHEIVPVSPGAGCIRLMSLLARTLGHDRVPTDVHATETPTTAQL 804
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BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.600e-8
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:  109 QSLASFLGHDRVPTDIHAEAVQTPAQLS 192
            QSLASFLGH RVPTDIHAEAVQTPAQLS
Sbjct:  967 QSLASFLGHHRVPTDIHAEAVQTPAQLS 994
[Close]
BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5KKX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.900e-8
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:  109 QSLASFLGHDRVPTDIHAEAVQTPAQL 189
            QSLASFLGH+RVPTDIHAEAVQTP+QL
Sbjct:   48 QSLASFLGHNRVPTDIHAEAVQTPSQL 74
[Close]
BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5JEN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.340e-7
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:  109 QSLASFLGHDRVPTDIHAEAVQTPAQLS 192
            QSLASFLGHD VPTDIHAEA QTPA+LS
Sbjct:  351 QSLASFLGHDHVPTDIHAEADQTPAELS 378
[Close]
BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.260e-6
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:    1 MGRTGSRPTIHSILHAVEAIRLHG 72
            MGRTGSRPTIHSILH VEAIRLHG
Sbjct:  229 MGRTGSRPTIHSILHTVEAIRLHG 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig75.14027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KI50_9PHAE8.810e-2143.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE8.890e-2143.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNJ3_9PHAE3.960e-2046.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE5.130e-1942.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRP1_9PHAE2.300e-1445.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9E1_9PHAE2.700e-1134.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE3.600e-896.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKX1_9PHAE6.900e-892.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEN0_9PHAE4.340e-789.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXT2_9PHAE6.260e-695.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig75contigP-fluviatile_contig75:285646..286299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size192
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig75.14027.1prot_P-fluviatile_contig75.14027.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig75 285646..286299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817186.1648974-CDS-P-fluviatile_contig75:285645..2857261622817186.1648974-CDS-P-fluviatile_contig75:285645..285726Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 285646..285726 -
1693571433.567866-CDS-P-fluviatile_contig75:285645..2857261693571433.567866-CDS-P-fluviatile_contig75:285645..285726Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 285646..285726 -
1622817186.1801124-CDS-P-fluviatile_contig75:285921..2859621622817186.1801124-CDS-P-fluviatile_contig75:285921..285962Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 285922..285962 -
1693571435.5361068-CDS-P-fluviatile_contig75:285921..2859621693571435.5361068-CDS-P-fluviatile_contig75:285921..285962Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 285922..285962 -
1622817186.1916814-CDS-P-fluviatile_contig75:286229..2862991622817186.1916814-CDS-P-fluviatile_contig75:286229..286299Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 286230..286299 -
1693571436.4658258-CDS-P-fluviatile_contig75:286229..2862991693571436.4658258-CDS-P-fluviatile_contig75:286229..286299Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 286230..286299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig75.14027.1

>prot_P-fluviatile_contig75.14027.1 ID=prot_P-fluviatile_contig75.14027.1|Name=mRNA_P-fluviatile_contig75.14027.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=64bp
MGRTGSRPTIHSILHAVEAIRLHGICPDASKGEHTHQSLASFLGHDRVPT
DIHAEAVQTPAQLS
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mRNA from alignment at P-fluviatile_contig75:285646..286299-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig75.14027.1 ID=mRNA_P-fluviatile_contig75.14027.1|Name=mRNA_P-fluviatile_contig75.14027.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig75:285646..286299- (Porterinema fluviatile SAG_2381)
ATGGGGAGGACGGGATCGCGGCCCACCATACACTCCATCCTACATGCGGT
AGAGGCGATTCGTCTGCACGGTGAGAGCGTTTCGAATGTGGGTTGTGGAT
CGTGGGTTAGGGTTGACCTCGTTGAACGCCATTCGCTGGATCCTTGCAGC
TAAGAACACCGCCGATAGACACGATGGGCATTGCGGGGGAGGAAGAGGGG
GGTGCGCCACTCACCCACCACTCAACCAAGCATTCTGATAGTGCTTCACC
GTCCATGTTTATCTGAAAAATGCACTCACGCCGAGCTCGTCACGTGACCT
CTCGCTGCCTGCATCACACGTTGAACGAAATGTACAGGAATATGTCCGGA
CGCCAGCAAGGGTGAACACACCCACCAGATGAACAAGTCTGGAAGAGGTG
TGGACTGCGGTAGGAGCCCTTCACTGCACATGGCTAAGCGGGCGAACGTC
AACAGCGCATTCTTGGCGTTATCCAACGGGCTGCCGTACAGAGTCACTAA
GTACAACCGACAGACAAAGATGCACGAGATCGTCACCGTTCGACCTGGTG
ATGGCTGTGTCCGGCTCATGCAGTCGCTGGCGAGCTTCCTCGGCCATGAC
CGCGTGCCCACAGACATTCACGCCGAGGCGGTTCAGACGCCAGCACAGCT
TAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig75:285646..286299-

>mRNA_P-fluviatile_contig75.14027.1 ID=mRNA_P-fluviatile_contig75.14027.1|Name=mRNA_P-fluviatile_contig75.14027.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=384bp|location=Sequence derived from alignment at P-fluviatile_contig75:285646..286299- (Porterinema fluviatile SAG_2381)
ATGGGGAGGACGGGATCGCGGCCCACCATACACTCCATCCTACATGCGGT
AGAGGCGATTCGTCTGCACGATGGGGAGGACGGGATCGCGGCCCACCATA
CACTCCATCCTACATGCGGTAGAGGCGATTCGTCTGCACGGAATATGTCC
GGACGCCAGCAAGGGTGAACACACCCACCAGGAATATGTCCGGACGCCAG
CAAGGGTGAACACACCCACCAGTCGCTGGCGAGCTTCCTCGGCCATGACC
GCGTGCCCACAGACATTCACGCCGAGGCGGTTCAGACGCCAGCACAGCTT
AGCTCGCTGGCGAGCTTCCTCGGCCATGACCGCGTGCCCACAGACATTCA
CGCCGAGGCGGTTCAGACGCCAGCACAGCTTAGC
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