mRNA_P-fluviatile_contig75.14013.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig75.14013.1 vs. uniprot
Match: D8LM48_ECTSI (TRAF-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM48_ECTSI) HSP 1 Score: 547 bits (1410), Expect = 2.650e-184 Identity = 382/651 (58.68%), Postives = 427/651 (65.59%), Query Frame = 2
Query: 239 EWIIGEVAPWLGMEETLRYTCNVCRAWRYWCDNDVKTLHVGNDYQRLCVADSYDGSSKEARFCSTRPRGVVIPLFLPLVPSRLRELHLSGASTSLPACELGIIRRGCQLRKLVVTSVRFASTLRKLVAVKTRLWERWDMSAFPKLAALEVSFAGRVLLKQLHRKAEMGSRLTELCVCDLALRYLVRPAELTELAEAVGGVSTFRMRRVDCVKELSNLAYLRAILGRLHNLQVLELTDVALDDRMLGVLGEVLTSARSSXXXXXXXXXXXXXXXXXXXXGAPYLGESGSGPSNMFFPSIGHAGAAAGAVAGAQDRGXXXXXXXXXRTAVGGTAGGKVRLRTLVLGRCGGVSEGAFEAFLDLVGG----GAAVVGARES-SGARGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLALSTVRIQGCRALGDRALALLCDGAGDRLCDVQCPALREVKAWGVRLAGGLGSSVAAAGGSEGGASLVASASALRKAYRARGIELAWAAPLPSSDSMAAGEGMRARPWRGXXXXXXXXXXXXXXCEGPIGLEGXXXXXXXSXXXXXXXXXXXXXXXXXREKGGGPRRPCRLKCGAWPKMGDAVDHLEVCPLAPTRCLLWADGCKWVGGRSERRRHLEACPMWQVGCPVC 2176
EW+ GE+APWLG EETLR TC+VCRAWR+WC+N + LH+GND+QRL GSS CS R G+ IPLFLPLVP LREL +SG TSL ELG IRRGC+L+KLVVT +RFA+TL++LVAVKTRLW RWD+S F L +LEVSFAGR +LKQL RKAEMGSRL ELCVCDLALR LVRP ELTELAEAVGG STFR+RRVD VKE+ N AYLRAI GRL NLQVLELTDVALDD ML VLGE +SAR GA + + P N FFPS A AVA +Q G AV LRTLVLGRCGGVSE AFEAFLDLV G A +VG R S S RG XXXXXXXXXXXXXXXXXXXXXXXXXX LALS+VR++GCRALG+R LALLC GA +RL D+QCP LR VKAWG+RLAG LG S ++ S A A ALR+++ ARG+ELAWA PLP +G +P R C G+ G XXXX XXXXXXXXXX G RRPCRL+CGA PK+ DA DHLEVCPLAP CLL ADGC W G R +RRRHL ACPMWQV CP C
Sbjct: 12 EWLHGEIAPWLGAEETLRRTCSVCRAWRHWCNNYLTVLHIGNDHQRL------HGSS-----CSARTAGLSIPLFLPLVPFALRELSMSGGWTSLGGVELGTIRRGCRLKKLVVTGMRFAATLKRLVAVKTRLWNRWDLSTFAALTSLEVSFAGRAMLKQLPRKAEMGSRLAELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSAR---------------LPPAAVKGA--AAAARAEPYNTFFPS-------ANAVAASQQDGGEGD------VAV-------ASLRTLVLGRCGGVSEPAFEAFLDLVAGCGVIRAGLVGKRGSGSEERGXXXXXXXXXXXXXXXXXXXXXXXXXXXG----------LALSSVRLEGCRALGNRGLALLCGGARERLSDIQCPTLRMVKAWGIRLAGSLGGSAVSSXXXXXXPS--AEALALRQSFEARGVELAWAGPLPPP----SGRVRELQPPR-ENKPGREQRRRGHGC----GVNGGSGERPEPGXXXXWRXXXXXXXXXXXXXSGQGRRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVMCPGC 593
BLAST of mRNA_P-fluviatile_contig75.14013.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE) HSP 1 Score: 482 bits (1241), Expect = 5.310e-154 Identity = 351/806 (43.55%), Postives = 396/806 (49.13%), Query Frame = 2
Query: 239 EWIIGEVAPWLGMEETLRYTCNVCRAWRYWCDNDVKTLHVGNDYQRLCVADSYDGSSKEARFCSTRPRGVVIPLFLPLVPSRLRELHLSGASTSLPACELGIIRRGCQLRKLVVT--------------------------------------------------------------------------------------------------------------------SVRFASTLRKLVAVKTRLWERWDMSAFPKLAALEVSFAGRVLLKQLHRKAEMGSRLTELCVCDLALRYLVRPAELTELAEAVGGVSTFRMRRVDCVKELSNLAYLRAILGRLHNLQVLELTDVALDDRMLGVLGEVLTSARSSXXXXXXXXXXXXXXXXXXXXGAPYLGESGSGPSNMFFPSIGHAGAAAGAVAGAQDRGXXXXXXXXXRTAVGGTAGGKVRLRTLVLGRCGGVSEGAFEAFLDLVGGGAAVVGARESSGARGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLALSTVRIQGCRALGDRALALLCDGAGDRLCDVQ--------------------------------------------CPALREVKAWGVRLAGGLGSSVAAAGGSEGGASLVASASALRKAYRARGIELAWAAPLPSSDSMAAGEGMRARPWRGXXXXXXXXXXXXXXCEGPIGLEGXXXXXXXSXXXXXXXXXXXXXXXXXREKGGGPRRPCRLKCGAWPKMGDAVDHLEVCPLAPTRCLLWADGCKWVGGRSERRRHLEACPMWQVGCPVC 2176
EW+ GE+APWLG EETLR TC+VCRAWR+WC+N + LH+GND+Q L GSS CS R G+ IPLFLPLVP LREL +SG TSL ELG IRRGC+L+KLVVT S RFA+TL++LVAVKTRLW RWD+S F L +LE SFAGR +LKQLHRKAEMGSRL ELCVCDLALR LVRP ELTELAEAVGG STFR+RRVD VKE+ N AYLRAI GRL NLQVLELTDVALDD ML VLGE +SAR GA + + P N FFPS A AVA +Q G GG A LRTLVLGRCGG+SE AFE FLDL GG + +G G LALS VR++GCRALG+R LALLCDGA +RL D+Q CP LR VKAWG+RLAG LGS A++ S S A A AL +++ ARG+ELAWA PLP +R P C G++G XXXXXXXXXXXXXXXX RRPCRL+CGA PK+ DA DHLEVCPLAP CLL ADGC W G R +RRRHL ACPMWQV CP C
Sbjct: 12 EWLHGEIAPWLGAEETLRRTCSVCRAWRHWCNNYLTVLHIGNDHQHL------HGSS-----CSVRTAGLSIPLFLPLVPFALRELSMSGGWTSLGGVELGTIRRGCRLKKLVVTGMRLCSFSYRELLLFEHLEELDISDSQMDIPLPRLRFSEPASGKPDLDGIPQAEPVALSPPRRPSIIFPRARSGRVVEQASGISTPFAPSTASRVGGDRRRSRVSSGGEFGDRAFDSPRFAATLKRLVAVKTRLWNRWDLSTFAALTSLEASFAGRAMLKQLHRKAEMGSRLAELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSAR---------------LPPAAVEGA--AAAARAQPYNTFFPS-------ANAVAASQQDGGE-----------GGVA--VASLRTLVLGRCGGISESAFETFLDLAAGGGVI-----QAGLVGKRGSGSEERGGSIRNRKNSGGSDGGDAAAVGAAYAGGGLALSRVRLEGCRALGNRGLALLCDGARERLSDIQVAGSLLLTDAGVENLAKSCPRLKHVDLSGCPGVTSNSLTHLLAKCPTLRVVKAWGIRLAGSLGSHAASSSFS----SPSAEALALGQSFEARGVELAWAGPLPPPSGR-----VRELPPPREKKPGREQWRRGHGC----GVDGGSGERPEPGXXXXXXXXXXXXXXXXXXXXXQGRRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCVWKGTRRQRRRHLAACPMWQVMCPGC 751 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig75.14013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig75.14013.1 >prot_P-fluviatile_contig75.14013.1 ID=prot_P-fluviatile_contig75.14013.1|Name=mRNA_P-fluviatile_contig75.14013.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=661bp MTFGEVEWIIGEVAPWLGMEETLRYTCNVCRAWRYWCDNDVKTLHVGNDYback to top mRNA from alignment at P-fluviatile_contig75:159476..169512- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig75.14013.1 ID=mRNA_P-fluviatile_contig75.14013.1|Name=mRNA_P-fluviatile_contig75.14013.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=10037bp|location=Sequence derived from alignment at P-fluviatile_contig75:159476..169512- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig75:159476..169512- >mRNA_P-fluviatile_contig75.14013.1 ID=mRNA_P-fluviatile_contig75.14013.1|Name=mRNA_P-fluviatile_contig75.14013.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3966bp|location=Sequence derived from alignment at P-fluviatile_contig75:159476..169512- (Porterinema fluviatile SAG_2381)back to top |