mRNA_P-fluviatile_contig74.13980.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig74.13980.1
Unique NamemRNA_P-fluviatile_contig74.13980.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig74.13980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig74contigP-fluviatile_contig74:437832..438512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size681
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig74.13980.1prot_P-fluviatile_contig74.13980.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig74 438003..438359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817177.6763718-UTR-P-fluviatile_contig74:437831..4380021622817177.6763718-UTR-P-fluviatile_contig74:437831..438002Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 437832..438002 +
1693571395.4495504-UTR-P-fluviatile_contig74:437831..4380021693571395.4495504-UTR-P-fluviatile_contig74:437831..438002Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 437832..438002 +
1622817177.696909-UTR-P-fluviatile_contig74:438359..4385121622817177.696909-UTR-P-fluviatile_contig74:438359..438512Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 438360..438512 +
1693571395.465459-UTR-P-fluviatile_contig74:438359..4385121693571395.465459-UTR-P-fluviatile_contig74:438359..438512Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 438360..438512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817177.6868196-CDS-P-fluviatile_contig74:438002..4383591622817177.6868196-CDS-P-fluviatile_contig74:438002..438359Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 438003..438359 +
1693571395.4575727-CDS-P-fluviatile_contig74:438002..4383591693571395.4575727-CDS-P-fluviatile_contig74:438002..438359Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 438003..438359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig74.13980.1

>prot_P-fluviatile_contig74.13980.1 ID=prot_P-fluviatile_contig74.13980.1|Name=mRNA_P-fluviatile_contig74.13980.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=119bp
MSLLLARKSSRKAYSASASCPQWPPGTPSCRSRPATTPTKLRILRANLFG
HVSRRNALHLCRIWAQLSSPDNEYNRKPATLDANEKKMKKGGWESSNPEK
EKPTPSPKQAYRPSSANC*
back to top

mRNA from alignment at P-fluviatile_contig74:437832..438512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig74.13980.1 ID=mRNA_P-fluviatile_contig74.13980.1|Name=mRNA_P-fluviatile_contig74.13980.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=681bp|location=Sequence derived from alignment at P-fluviatile_contig74:437832..438512+ (Porterinema fluviatile SAG_2381)
TCAAACTCCCGGCGCGACACACCTTTGCACCTGAAATTAACGACACAGAC
ATTCTATTCAGTTCGAAGGCATTCGCGGCGCCTCCCCCGCCCTCCCATCA
CAACGATGATTGTTTTCACACCTCCAATCCCCGGAGCACACCCAACAGCT
CTCGCATGTTTGCGATAGCTGATGTCCCTGCTTTTGGCAAGAAAGAGCAG
CCGGAAGGCATATTCCGCGTCAGCGTCATGTCCGCAGTGGCCGCCCGGCA
CTCCATCTTGTCGCTCACGACCGGCAACTACTCCGACGAAACTACGAATC
CTTCGCGCGAATCTGTTCGGCCACGTCAGCAGACGCAACGCTTTACACCT
TTGCAGAATCTGGGCACAACTTAGCTCCCCCGACAACGAGTACAATCGAA
AACCGGCGACGCTAGACGCTAACGAAAAAAAAATGAAGAAAGGGGGCTGG
GAATCGAGCAATCCAGAAAAAGAGAAACCCACCCCTTCTCCGAAGCAGGC
GTACCGACCGTCGTCAGCTAATTGCTGAAACTCGCGAGCTTTGGCGGTCA
GCAAGTGGTCCACGACAGCAAGCTGCTCATCCCGAACAAAGTCCATTCTA
GCCATATCACGCGGAAAACTGAGATAGGACTTCCCGAAAAAAAAAAAAAT
CACCAGGAAACCATGAAACACCAACATCGGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig74:437832..438512+

>mRNA_P-fluviatile_contig74.13980.1 ID=mRNA_P-fluviatile_contig74.13980.1|Name=mRNA_P-fluviatile_contig74.13980.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=714bp|location=Sequence derived from alignment at P-fluviatile_contig74:437832..438512+ (Porterinema fluviatile SAG_2381)
ATGTCCCTGCTTTTGGCAAGAAAGAGCAGCCGGAAGGCATATTCCGCGTC
AGCGTCATGTCCGCAGTGGCCGCCCGGCACTCCATCTTGTCGCTCACGAC
CGGCAACTACTCCGACGAAACTACGAATCCTTCGCGCGAATCTGTTCGGC
CACGTCAGCAGACGCAACGCTTTACACCTTTGCAGAATCTGGGCACAACT
TAGCTCCCCCGACAACGAGTACAATCGAAAACCGGCGACGCTAGACGCTA
ACGAAAAAAAAATGAAGAAAGGGGGCTGGGAATCGAGCAATCCAGAAAAA
GAGAAACCCACCCCTTCTCCGAAGCAGGCGTACCGACCGTCGTCAGCTAA
TTGCTGAATGTCCCTGCTTTTGGCAAGAAAGAGCAGCCGGAAGGCATATT
CCGCGTCAGCGTCATGTCCGCAGTGGCCGCCCGGCACTCCATCTTGTCGC
TCACGACCGGCAACTACTCCGACGAAACTACGAATCCTTCGCGCGAATCT
GTTCGGCCACGTCAGCAGACGCAACGCTTTACACCTTTGCAGAATCTGGG
CACAACTTAGCTCCCCCGACAACGAGTACAATCGAAAACCGGCGACGCTA
GACGCTAACGAAAAAAAAATGAAGAAAGGGGGCTGGGAATCGAGCAATCC
AGAAAAAGAGAAACCCACCCCTTCTCCGAAGCAGGCGTACCGACCGTCGT
CAGCTAATTGCTGA
back to top