mRNA_P-fluviatile_contig12.1322.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1322.1
Unique NamemRNA_P-fluviatile_contig12.1322.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1322.1 vs. uniprot
Match: D7FHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ2_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 9.840e-125
Identity = 199/373 (53.35%), Postives = 259/373 (69.44%), Query Frame = 1 
Query:    1 RALKHPMSQMVCEVARGAGIHSIINNGIYDVDHHVSEARDTSEMKLSLQKASSEVGFELTPIQIETISNTVWRPTSRATVKYNIHRDSSPEITVNRTFDSPITDMGSPVFIDLPPGMGKTIVSSIASLIMSLERHDEVTRQKAYSTSEGFIEVVDKGPNGGRISMIFCPKHVHHQWMFAAKKAVEILSLMYTTKTLRVESNRMASSIDSSTVDAALIICDSSSFSLSRALEADVVYGTLCFDECTENCDVKNNAVYSLIPNGLMYGRLVLISADFSKMGDYNSKVGSSRKGSMIRRVFGESTTAEVSHAIVRASQRPGFYIHG-NSTVKRAASVVACLTMNCVFPADRREEVVNSSAELLSDVTLYTFGVNYK 1116
            R+LK  M+ MV   ARG G+HSII+   Y + HHVS+ R  S +K +L+K+S+  GFELTPIQ+ETI N VWRPTSR  V Y++ RD  P   V R F SP++DMGSPVFIDLPPGM KTIV+ I SL++S+ER DEV     +    G  E   +GP+            +H        KA  I+S MY ++   V +N++A S+     D ALI+CDSSSF  ++AL A V YG+LCFDECT+NCD+KNNAVYS++P+ ++YGRL+LISADFSKM +YNSK+GSSRKGSMIRRVFG + + E++HAI     R G Y +G N+T  R A +VACLTMN VFP D+RE VV +SA+L+SDV L+TFG++Y+
Sbjct:   16 RSLKCSMADMVRSAARGCGLHSIIDCERYTITHHVSDDRHMSGVKDALKKSSASHGFELTPIQVETIVNCVWRPTSRVNVGYDVRRDGHPSTRVVRKFMSPVSDMGSPVFIDLPPGMEKTIVAPIVSLLLSVERMDEVCPHMQHGVHRGGGEGAGRGPS------------LHDPTNGCLTKAANIMSSMYPSERFVVGANKIAESLSREDFDFALIVCDSSSFGPTKALSASVAYGSLCFDECTDNCDIKNNAVYSIVPSSMIYGRLLLISADFSKMTEYNSKMGSSRKGSMIRRVFGNNQSLEMAHAI---KGRLGSYAYGENATTTRGAPLVACLTMNAVFPRDQRETVVGTSADLISDVNLHTFGISYR 373
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHJ2_ECTSI9.840e-12553.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:52679..53794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002170.1
Exons1
Model size1116
Cds size1098
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.3573973-CDS-P-fluviatile_contig12:52678..537761622815491.3573973-CDS-P-fluviatile_contig12:52678..53776Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 52679..53776 -
1693562052.1524549-CDS-P-fluviatile_contig12:52678..537761693562052.1524549-CDS-P-fluviatile_contig12:52678..53776Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 52679..53776 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.3731341-UTR-P-fluviatile_contig12:53776..537941622815491.3731341-UTR-P-fluviatile_contig12:53776..53794Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 53777..53794 -
1693562052.161029-UTR-P-fluviatile_contig12:53776..537941693562052.161029-UTR-P-fluviatile_contig12:53776..53794Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 53777..53794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1322.1prot_P-fluviatile_contig12.1322.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 52679..53776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1322.1

>prot_P-fluviatile_contig12.1322.1 ID=prot_P-fluviatile_contig12.1322.1|Name=mRNA_P-fluviatile_contig12.1322.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=366bp
MSQMVCEVARGAGIHSIINNGIYDVDHHVSEARDTSEMKLSLQKASSEVG
FELTPIQIETISNTVWRPTSRATVKYNIHRDSSPEITVNRTFDSPITDMG
SPVFIDLPPGMGKTIVSSIASLIMSLERHDEVTRQKAYSTSEGFIEVVDK
GPNGGRISMIFCPKHVHHQWMFAAKKAVEILSLMYTTKTLRVESNRMASS
IDSSTVDAALIICDSSSFSLSRALEADVVYGTLCFDECTENCDVKNNAVY
SLIPNGLMYGRLVLISADFSKMGDYNSKVGSSRKGSMIRRVFGESTTAEV
SHAIVRASQRPGFYIHGNSTVKRAASVVACLTMNCVFPADRREEVVNSSA
ELLSDVTLYTFGVNYK
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mRNA from alignment at P-fluviatile_contig12:52679..53794-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1322.1 ID=mRNA_P-fluviatile_contig12.1322.1|Name=mRNA_P-fluviatile_contig12.1322.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1116bp|location=Sequence derived from alignment at P-fluviatile_contig12:52679..53794- (Porterinema fluviatile SAG_2381)
AGGGCTCTCAAGCACCCCATGTCCCAAATGGTGTGCGAGGTGGCTCGGGG
TGCGGGTATCCACTCCATAATCAACAATGGTATTTATGATGTGGACCACC
ACGTCTCCGAGGCTCGCGACACCTCGGAAATGAAACTATCTCTGCAGAAG
GCGTCATCGGAGGTTGGTTTCGAGCTGACCCCTATCCAGATCGAGACGAT
ATCGAACACGGTATGGAGGCCCACTTCTCGTGCGACCGTGAAGTACAATA
TCCATCGGGATAGCTCTCCCGAGATAACCGTCAATAGAACGTTTGACTCC
CCCATCACCGACATGGGGTCTCCCGTGTTCATCGATCTTCCTCCTGGTAT
GGGAAAGACGATAGTGTCGTCAATCGCAAGCTTGATTATGTCACTGGAGC
GACACGACGAGGTCACTCGTCAGAAGGCGTACTCCACGAGCGAAGGATTC
ATCGAAGTGGTGGACAAGGGTCCCAATGGTGGGCGCATCTCGATGATCTT
TTGCCCCAAGCACGTTCATCACCAGTGGATGTTCGCAGCGAAGAAGGCCG
TGGAAATCTTGTCCCTGATGTACACGACCAAGACACTCCGGGTGGAATCC
AATAGGATGGCGAGCTCCATCGACTCTTCCACTGTGGACGCCGCCCTGAT
CATATGCGATTCGTCGTCATTTAGCCTGTCGAGGGCCTTGGAAGCGGACG
TGGTTTACGGGACCCTGTGCTTCGACGAGTGCACCGAAAACTGCGATGTG
AAAAACAACGCCGTGTACTCGCTTATACCCAACGGTCTCATGTACGGAAG
GCTGGTCCTCATATCTGCGGACTTCTCCAAGATGGGTGATTACAACTCCA
AAGTGGGGTCAAGTCGGAAAGGAAGCATGATTCGCCGGGTCTTCGGGGAG
TCCACCACGGCGGAGGTGTCACATGCCATAGTGCGGGCCAGCCAGAGGCC
CGGTTTCTACATTCATGGGAACTCCACAGTGAAGAGGGCGGCATCCGTGG
TCGCGTGCCTGACGATGAACTGCGTCTTCCCAGCAGATAGGAGAGAGGAA
GTGGTCAACTCGTCCGCCGAGCTACTATCCGACGTGACTCTTTACACGTT
CGGCGTGAACTACAAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:52679..53794-

>mRNA_P-fluviatile_contig12.1322.1 ID=mRNA_P-fluviatile_contig12.1322.1|Name=mRNA_P-fluviatile_contig12.1322.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2196bp|location=Sequence derived from alignment at P-fluviatile_contig12:52679..53794- (Porterinema fluviatile SAG_2381)
ATGTCCCAAATGGTGTGCGAGGTGGCTCGGGGTGCGGGTATCCACTCCAT
AATCAACAATGGTATTTATGATGTGGACCACCACGTCTCCGAGGCTCGCG
ACACCTCGGAAATGAAACTATCTCTGCAGAAGGCGTCATCGGAGGTTGGT
TTCGAGCTGACCCCTATCCAGATCGAGACGATATCGAACACGGTATGGAG
GCCCACTTCTCGTGCGACCGTGAAGTACAATATCCATCGGGATAGCTCTC
CCGAGATAACCGTCAATAGAACGTTTGACTCCCCCATCACCGACATGGGG
TCTCCCGTGTTCATCGATCTTCCTCCTGGTATGGGAAAGACGATAGTGTC
GTCAATCGCAAGCTTGATTATGTCACTGGAGCGACACGACGAGGTCACTC
GTCAGAAGGCGTACTCCACGAGCGAAGGATTCATCGAAGTGGTGGACAAG
GGTCCCAATGGTGGGCGCATCTCGATGATCTTTTGCCCCAAGCACGTTCA
TCACCAGTGGATGTTCGCAGCGAAGAAGGCCGTGGAAATCTTGTCCCTGA
TGTACACGACCAAGACACTCCGGGTGGAATCCAATAGGATGGCGAGCTCC
ATCGACTCTTCCACTGTGGACGCCGCCCTGATCATATGCGATTCGTCGTC
ATTTAGCCTGTCGAGGGCCTTGGAAGCGGACGTGGTTTACGGGACCCTGT
GCTTCGACGAGTGCACCGAAAACTGCGATGTGAAAAACAACGCCGTGTAC
TCGCTTATACCCAACGGTCTCATGTACGGAAGGCTGGTCCTCATATCTGC
GGACTTCTCCAAGATGGGTGATTACAACTCCAAAGTGGGGTCAAGTCGGA
AAGGAAGCATGATTCGCCGGGTCTTCGGGGAGTCCACCACGGCGGAGGTG
TCACATGCCATAGTGCGGGCCAGCCAGAGGCCCGGTTTCTACATTCATGG
GAACTCCACAGTGAAGAGGGCGGCATCCGTGGTCGCGTGCCTGACGATGA
ACTGCGTCTTCCCAGCAGATAGGAGAGAGGAAGTGGTCAACTCGTCCGCC
GAGCTACTATCCGACGTGACTCTTTACACGTTCGGCGTGAACTACAAGAT
GTCCCAAATGGTGTGCGAGGTGGCTCGGGGTGCGGGTATCCACTCCATAA
TCAACAATGGTATTTATGATGTGGACCACCACGTCTCCGAGGCTCGCGAC
ACCTCGGAAATGAAACTATCTCTGCAGAAGGCGTCATCGGAGGTTGGTTT
CGAGCTGACCCCTATCCAGATCGAGACGATATCGAACACGGTATGGAGGC
CCACTTCTCGTGCGACCGTGAAGTACAATATCCATCGGGATAGCTCTCCC
GAGATAACCGTCAATAGAACGTTTGACTCCCCCATCACCGACATGGGGTC
TCCCGTGTTCATCGATCTTCCTCCTGGTATGGGAAAGACGATAGTGTCGT
CAATCGCAAGCTTGATTATGTCACTGGAGCGACACGACGAGGTCACTCGT
CAGAAGGCGTACTCCACGAGCGAAGGATTCATCGAAGTGGTGGACAAGGG
TCCCAATGGTGGGCGCATCTCGATGATCTTTTGCCCCAAGCACGTTCATC
ACCAGTGGATGTTCGCAGCGAAGAAGGCCGTGGAAATCTTGTCCCTGATG
TACACGACCAAGACACTCCGGGTGGAATCCAATAGGATGGCGAGCTCCAT
CGACTCTTCCACTGTGGACGCCGCCCTGATCATATGCGATTCGTCGTCAT
TTAGCCTGTCGAGGGCCTTGGAAGCGGACGTGGTTTACGGGACCCTGTGC
TTCGACGAGTGCACCGAAAACTGCGATGTGAAAAACAACGCCGTGTACTC
GCTTATACCCAACGGTCTCATGTACGGAAGGCTGGTCCTCATATCTGCGG
ACTTCTCCAAGATGGGTGATTACAACTCCAAAGTGGGGTCAAGTCGGAAA
GGAAGCATGATTCGCCGGGTCTTCGGGGAGTCCACCACGGCGGAGGTGTC
ACATGCCATAGTGCGGGCCAGCCAGAGGCCCGGTTTCTACATTCATGGGA
ACTCCACAGTGAAGAGGGCGGCATCCGTGGTCGCGTGCCTGACGATGAAC
TGCGTCTTCCCAGCAGATAGGAGAGAGGAAGTGGTCAACTCGTCCGCCGA
GCTACTATCCGACGTGACTCTTTACACGTTCGGCGTGAACTACAAG
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