mRNA_P-fluviatile_contig72.13844.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13844.1
Unique NamemRNA_P-fluviatile_contig72.13844.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:12995..13735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817161.4109688-CDS-P-fluviatile_contig72:12994..132441622817161.4109688-CDS-P-fluviatile_contig72:12994..13244Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 12995..13244 +
1693571327.089151-CDS-P-fluviatile_contig72:12994..132441693571327.089151-CDS-P-fluviatile_contig72:12994..13244Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 12995..13244 +
1622817161.4223826-CDS-P-fluviatile_contig72:13595..137351622817161.4223826-CDS-P-fluviatile_contig72:13595..13735Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 13596..13735 +
1693571327.1043327-CDS-P-fluviatile_contig72:13595..137351693571327.1043327-CDS-P-fluviatile_contig72:13595..13735Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 13596..13735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13844.1prot_P-fluviatile_contig72.13844.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 12995..13735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13844.1

>prot_P-fluviatile_contig72.13844.1 ID=prot_P-fluviatile_contig72.13844.1|Name=mRNA_P-fluviatile_contig72.13844.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=130bp
CHHSILERSVNRSGQVANWPNVLDQKQLLLPPVVSAAVIFKLRRTGSSRR
TEVDPHGLAPGRTMTSLDRLAQMDGWDIGDDDAEVESVGSSVPAAAGQRY
TLDDGSSKLVGKARKENVSERRQIDPESNQ
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mRNA from alignment at P-fluviatile_contig72:12995..13735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13844.1 ID=mRNA_P-fluviatile_contig72.13844.1|Name=mRNA_P-fluviatile_contig72.13844.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=741bp|location=Sequence derived from alignment at P-fluviatile_contig72:12995..13735+ (Porterinema fluviatile SAG_2381)
TGCCACCATTCCATCCTTGAACGCTCAGTGAACAGAAGCGGGCAGGTGGC
TAATTGGCCAAATGTTCTAGACCAGAAACAGCTTCTTCTGCCTCCGGTCG
TTTCTGCAGCTGTTATTTTTAAACTTCGCAGAACAGGATCTTCTCGTCGG
ACCGAAGTTGACCCGCACGGCCTCGCCCCAGGACGGACGATGACTTCTCT
CGATAGGCTTGCCCAAATGGACGGATGGGACATCGGTGATGACGATGCAG
GTGCCATTCCATAGTTTAGGGTGTAAGAGCTACTGGCTCCAAGATGCTCA
TGCAAAACGTCGTGACCTGAGAAATCAGAGCCCTACCCACTACTTTGCAG
ACTGCAAGGCAGGAGTTCGTTCGTCCACCTGCAGGCGGGACACACAGTGA
ACGCTGATCATTTATGGGTCCCATTGAATTGTAGCTTGCACGCATGGGGG
GCACATAATCAAGGCCCTGGGGGATATCAAGTCATCTACATCGACCAAAA
AAATCATACGGATGAAATATAGCCATTTGAAAACGGAGGAAGATAGTGAC
CACCGACGCGCCGACCTTGGATAAATGCCCTGCGCTCCTTGTTCTTTTTA
GAAGTTGAATCGGTTGGCTCATCGGTACCGGCCGCGGCGGGACAGCGGTA
TACTCTGGACGACGGTAGCAGCAAGCTCGTCGGGAAAGCGCGAAAAGAAA
ATGTCAGCGAACGTCGTCAAATTGATCCAGAAAGTAACCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig72:12995..13735+

>mRNA_P-fluviatile_contig72.13844.1 ID=mRNA_P-fluviatile_contig72.13844.1|Name=mRNA_P-fluviatile_contig72.13844.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig72:12995..13735+ (Porterinema fluviatile SAG_2381)
TGCCACCATTCCATCCTTGAACGCTCAGTGAACAGAAGCGGGCAGGTGGC
TAATTGGCCAAATGTTCTAGACCAGAAACAGCTTCTTCTGCCTCCGGTCG
TTTCTGCAGCTGTTATTTTTAAACTTCGCAGAACAGGATCTTCTCGTCGG
ACCGAAGTTGACCCGCACGGCCTCGCCCCAGGACGGACGATGACTTCTCT
CGATAGGCTTGCCCAAATGGACGGATGGGACATCGGTGATGACGATGCAG
TGCCACCATTCCATCCTTGAACGCTCAGTGAACAGAAGCGGGCAGGTGGC
TAATTGGCCAAATGTTCTAGACCAGAAACAGCTTCTTCTGCCTCCGGTCG
TTTCTGCAGCTGTTATTTTTAAACTTCGCAGAACAGGATCTTCTCGTCGG
ACCGAAGTTGACCCGCACGGCCTCGCCCCAGGACGGACGATGACTTCTCT
CGATAGGCTTGCCCAAATGGACGGATGGGACATCGGTGATGACGATGCAG
AAGTTGAATCGGTTGGCTCATCGGTACCGGCCGCGGCGGGACAGCGGTAT
ACTCTGGACGACGGTAGCAGCAAGCTCGTCGGGAAAGCGCGAAAAGAAAA
TGTCAGCGAACGTCGTCAAATTGATCCAGAAAGTAACCAGAAGTTGAATC
GGTTGGCTCATCGGTACCGGCCGCGGCGGGACAGCGGTATACTCTGGACG
ACGGTAGCAGCAAGCTCGTCGGGAAAGCGCGAAAAGAAAATGTCAGCGAA
CGTCGTCAAATTGATCCAGAAAGTAACCAG
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