mRNA_P-fluviatile_contig12.1543.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1543.1
Unique NamemRNA_P-fluviatile_contig12.1543.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2853297..2853891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size595
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1543.1prot_P-fluviatile_contig12.1543.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2853310..2853810 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.4164603-UTR-P-fluviatile_contig12:2853296..28533091622815490.4164603-UTR-P-fluviatile_contig12:2853296..2853309Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2853297..2853309 +
1693562048.2878218-UTR-P-fluviatile_contig12:2853296..28533091693562048.2878218-UTR-P-fluviatile_contig12:2853296..2853309Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2853297..2853309 +
1622815490.4423592-UTR-P-fluviatile_contig12:2853810..28538911622815490.4423592-UTR-P-fluviatile_contig12:2853810..2853891Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2853811..2853891 +
1693562048.3028064-UTR-P-fluviatile_contig12:2853810..28538911693562048.3028064-UTR-P-fluviatile_contig12:2853810..2853891Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2853811..2853891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.4285524-CDS-P-fluviatile_contig12:2853309..28538101622815490.4285524-CDS-P-fluviatile_contig12:2853309..2853810Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2853310..2853810 +
1693562048.295233-CDS-P-fluviatile_contig12:2853309..28538101693562048.295233-CDS-P-fluviatile_contig12:2853309..2853810Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2853310..2853810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1543.1

>prot_P-fluviatile_contig12.1543.1 ID=prot_P-fluviatile_contig12.1543.1|Name=mRNA_P-fluviatile_contig12.1543.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=167bp
MLCSCMCMLRFGACLPATSCGGVCAIAARIWFLHAPRNVDAGDARWSATV
RKYLRQNKTLCATLLVSRYGQPRKKLEVIAYCAALAFRSACSHSLSVRAS
GMPRTFLLPAISWFEPYSASSLPHLPAFSLTNALAFTSSTSFCMFYRSSW
CVTGSSVLPRTLGLDG*
back to top

mRNA from alignment at P-fluviatile_contig12:2853297..2853891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1543.1 ID=mRNA_P-fluviatile_contig12.1543.1|Name=mRNA_P-fluviatile_contig12.1543.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=595bp|location=Sequence derived from alignment at P-fluviatile_contig12:2853297..2853891+ (Porterinema fluviatile SAG_2381)
CTGTTGGTGGAATATGCTGTGCTCCTGCATGTGTATGTTGAGATTCGGCG
CATGCCTACCGGCCACTTCATGTGGTGGAGTTTGTGCAATTGCGGCCCGG
ATTTGGTTTCTTCACGCGCCAAGAAACGTAGATGCCGGTGACGCCAGATG
GAGCGCCACCGTTCGCAAATATTTGCGCCAAAATAAAACACTCTGTGCTA
CTTTGTTGGTGTCTAGATATGGGCAGCCGAGAAAAAAATTGGAAGTGATC
GCGTACTGTGCGGCGCTCGCTTTCCGCAGCGCGTGTTCCCACTCCCTTTC
CGTGCGCGCATCGGGAATGCCAAGAACGTTTCTGCTTCCCGCAATTTCCT
GGTTCGAACCATATTCAGCGAGCTCGCTACCGCATTTGCCTGCTTTCTCT
TTAACCAACGCGCTGGCTTTCACAAGCTCAACCTCATTTTGCATGTTTTA
TCGCTCATCCTGGTGTGTCACTGGCTCGTCCGTCCTGCCCCGAACGCTGG
GATTGGATGGATAGGCCCTTCAAGGAGCGGTGGCGGCTCCAGCATCGCCG
CCAAGATTGCCGCACTGAGCGGAAGCGTCAAGTCCTCTGTCTTGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:2853297..2853891+

>mRNA_P-fluviatile_contig12.1543.1 ID=mRNA_P-fluviatile_contig12.1543.1|Name=mRNA_P-fluviatile_contig12.1543.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1002bp|location=Sequence derived from alignment at P-fluviatile_contig12:2853297..2853891+ (Porterinema fluviatile SAG_2381)
ATGCTGTGCTCCTGCATGTGTATGTTGAGATTCGGCGCATGCCTACCGGC
CACTTCATGTGGTGGAGTTTGTGCAATTGCGGCCCGGATTTGGTTTCTTC
ACGCGCCAAGAAACGTAGATGCCGGTGACGCCAGATGGAGCGCCACCGTT
CGCAAATATTTGCGCCAAAATAAAACACTCTGTGCTACTTTGTTGGTGTC
TAGATATGGGCAGCCGAGAAAAAAATTGGAAGTGATCGCGTACTGTGCGG
CGCTCGCTTTCCGCAGCGCGTGTTCCCACTCCCTTTCCGTGCGCGCATCG
GGAATGCCAAGAACGTTTCTGCTTCCCGCAATTTCCTGGTTCGAACCATA
TTCAGCGAGCTCGCTACCGCATTTGCCTGCTTTCTCTTTAACCAACGCGC
TGGCTTTCACAAGCTCAACCTCATTTTGCATGTTTTATCGCTCATCCTGG
TGTGTCACTGGCTCGTCCGTCCTGCCCCGAACGCTGGGATTGGATGGATA
GATGCTGTGCTCCTGCATGTGTATGTTGAGATTCGGCGCATGCCTACCGG
CCACTTCATGTGGTGGAGTTTGTGCAATTGCGGCCCGGATTTGGTTTCTT
CACGCGCCAAGAAACGTAGATGCCGGTGACGCCAGATGGAGCGCCACCGT
TCGCAAATATTTGCGCCAAAATAAAACACTCTGTGCTACTTTGTTGGTGT
CTAGATATGGGCAGCCGAGAAAAAAATTGGAAGTGATCGCGTACTGTGCG
GCGCTCGCTTTCCGCAGCGCGTGTTCCCACTCCCTTTCCGTGCGCGCATC
GGGAATGCCAAGAACGTTTCTGCTTCCCGCAATTTCCTGGTTCGAACCAT
ATTCAGCGAGCTCGCTACCGCATTTGCCTGCTTTCTCTTTAACCAACGCG
CTGGCTTTCACAAGCTCAACCTCATTTTGCATGTTTTATCGCTCATCCTG
GTGTGTCACTGGCTCGTCCGTCCTGCCCCGAACGCTGGGATTGGATGGAT
AG
back to top