mRNA_P-fluviatile_contig7.13709.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13709.1
Unique NamemRNA_P-fluviatile_contig7.13709.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: A0A6H5KLD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD9_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 6.320e-65
Identity = 131/225 (58.22%), Postives = 157/225 (69.78%), Query Frame = 1 
Query:   46 MVAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTTTKIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSAKEKEEKXXXXXIKKEDEKRQLAQALQDINERLAKLEALDQRRNQSPEIQGGDDKGASPGRDGGILFPGRSRGLL---------------GLRSKSTPAGGAGGEGVTTAARGAGQGFTKDAGD 675
            MVAIP++KLFSMTVKTLAKPM++K++TEAQ+HP FRGVLN MGQAT+ IS RISIR+AGHTTTKIKPLEEDKAIADGG++LAEGFIYGLGT LMVFEYMS+AK+KE K     +KKE+EKR++AQAL+DIN RLA+LEALD+  N++ E+  G D+   P    G+ F   SR                  G    ST  GGAG       +R  G G     GD
Sbjct:    1 MVAIPVLKLFSMTVKTLAKPMARKIRTEAQRHPRFRGVLNSMGQATNRISARISIRLAGHTTTKIKPLEEDKAIADGGNMLAEGFIYGLGTSLMVFEYMSNAKDKEAKEAISKLKKEEEKREIAQALEDINRRLARLEALDRTGNRTHEVDDGADQRKWPL---GLAFQAPSRKTCVGDSTPRESRHPPDQGGGDASTVGGGAGSRNEHQGSRSGGSGMRGSGGD 222
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: A0A835YQK9_9STRA (Optic atrophy 3 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQK9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.050e-19
Identity = 60/138 (43.48%), Postives = 93/138 (67.39%), Query Frame = 1 
Query:   46 MVAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTTTKIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSAKEKEEKXXXXXIKKEDEKRQLAQALQDINERLAKLE 459
            M  +P  K+FS+ VKT+AKP++K+++ +A  + T +  +  MGQ++H +ST IS+R AG T + IKPL+E KA+A GGDLL+E FI+ +   L+V++Y +SA +   K XXXX       RQL  +L+ I+ RL ++E
Sbjct:    1 MAQVPAAKVFSLVVKTIAKPLAKELRRQASANATLKRAVIWMGQSSHKVSTIISVRAAGFTASNIKPLDESKALAIGGDLLSEIFIFSVAGGLLVWDYNNSAAKAAAKAXXXXXXXXXXARQLKASLEAIHARLDEIE 138
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: W5CPE5_WHEAT (Uncharacterized protein n=9 Tax=Triticeae TaxID=147389 RepID=W5CPE5_WHEAT)

HSP 1 Score: 91.3 bits (225), Expect = 4.950e-18
Identity = 54/146 (36.99%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:   46 MVAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTTT-KIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSA-----KEKEEKXXXXXIKKEDEKRQLAQALQDINERLAKLEAL 465
            M A+P++KL ++ ++TL+KP++ ++K++A  HP FR  +  + Q  H I+TRI  R+ GH T   I+PL+E+KA+    DL+ EGFI+ +    ++FE   SA     KE+  K     +++++E   LA+ L+D+  +LA+LE L
Sbjct:    1 MAALPVMKLGTLLLRTLSKPIANRLKSQAAVHPKFRDFIISIAQTNHRITTRIQRRIYGHATNVAIRPLDEEKAVQAATDLIGEGFIFSVAVAALIFEVQRSARSEARKEEARKQELEELRQKEEI--LAKDLEDLKVKLAELERL 144
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: A0A834TJI5_9FABA (OPA3-like protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TJI5_9FABA)

HSP 1 Score: 90.5 bits (223), Expect = 9.110e-18
Identity = 54/145 (37.24%), Postives = 90/145 (62.07%), Query Frame = 1 
Query:   46 MVAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTT-TKIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSAKEKEEKXXXXXIKKEDEKRQLAQALQDINERLAK-LEALDQR 474
            MV +P++KL ++ +KTL KP++ ++K EA  HP FR ++  + QA H  +TR+  R+ GH T   I+PL+E+KA+    DLL E F++ +    ++FE   S++ +         +KE+ +RQ  QA++D NE LA+ +E L Q+
Sbjct:    1 MVVLPVVKLGTLALKTLCKPIANRLKKEAGYHPKFRRLIISIAQANHRFTTRVQRRIYGHATDVAIRPLDEEKAVQAAADLLGELFVFSVAGAAVIFEVQRSSRSE--------ARKEEARRQEMQAIKDRNEDLAREVELLKQK 137
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: A0A5A7PGE7_STRAF (Optic atrophy 3 protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PGE7_STRAF)

HSP 1 Score: 89.0 bits (219), Expect = 2.530e-17
Identity = 44/108 (40.74%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:   49 VAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTTT-KIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSAKEKEEK 369
            + +PL+KL ++ +KTL+KP++ K+K EA KHP FR  +  + QA H I+T +  R+ GH T  KI+PL+E+KA+   GDL+ E F++ +G   ++FE   +A+ + +K
Sbjct:    1 MVLPLLKLGTLALKTLSKPVAAKLKKEAGKHPKFRSFIISVAQANHRITTTMQRRIYGHATNVKIRPLDEEKAVQAAGDLIGELFVFSVGVGALIFEVQRNARSEAKK 108
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: UPI0010A40ABE (OPA3-like protein n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A40ABE)

HSP 1 Score: 89.0 bits (219), Expect = 3.240e-17
Identity = 55/155 (35.48%), Postives = 93/155 (60.00%), Query Frame = 1 
Query:   46 MVAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTT-TKIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSAKEKEEKXXXXXIKKEDEKRQLAQALQDINERLAK-LEALDQRRNQSPEIQGG 504
            MV +P++KL ++ +KTL KP++ ++K EA  HP FR  +  + QA H ++T++  R+ GH T   I+PL E+KA+    DLL E F++ +    ++FE   S++ +         +KE+ +RQ  QA++D NE LA+ +E L Q+  +  E+  G
Sbjct:    1 MVVLPVVKLGTLALKTLCKPVANRLKKEAGYHPKFRQFIISIAQANHRVTTKLQRRIYGHATDVAIRPLNEEKAVQAAADLLGELFVFTVAGAAVIFEVQRSSRSE--------ARKEEIRRQEMQAIKDGNENLAREVELLKQKLEELEELARG 147
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: S8CQP2_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CQP2_9LAMI)

HSP 1 Score: 87.0 bits (214), Expect = 1.120e-16
Identity = 47/143 (32.87%), Postives = 93/143 (65.03%), Query Frame = 1 
Query:   49 VAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTTT-KIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSAKEKEEKXXXXXIKKEDEKR---QLAQALQDINERLAKLEAL 465
            + +PL+KL ++ +KTL+KP++ ++K EA +HP FR V+  + QA H ++T +  R+ GH T  +I+PL+E+KA+    DL+ E FI+ +G   ++FE+  S++ +  K      + E+ +R   ++AQ ++ + ++L+++E +
Sbjct:    1 MVLPLLKLGTLALKTLSKPIAARIKVEAGRHPRFRNVIISIAQANHRMTTTMQRRIYGHATNVEIRPLDEEKAVQAAVDLMGELFIFSVGVAALIFEWQRSSRSEARKEEIRRQELEEMRRRDEEVAQEVELLKQKLSEIENM 143
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: A0A151SAN4_CAJCA (Optic atrophy 3 protein isogeny n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SAN4_CAJCA)

HSP 1 Score: 87.0 bits (214), Expect = 1.540e-16
Identity = 51/145 (35.17%), Postives = 90/145 (62.07%), Query Frame = 1 
Query:   49 VAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTT-TKIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSA-----KEKEEKXXXXXIKKEDEKRQLAQALQDINERLAKLEAL 465
            +A+PL+KL ++ +KTL+KP++ ++K +A  HP FR ++  M QA H I+T++  R+ GH T  +I+PL E+KA+    DL+ E F++ +   L++FE   SA     KE+  K     +K++ E   LA+ ++ +  R+ +LE +
Sbjct:    1 MALPLVKLGTLALKTLSKPVASRLKQQAALHPRFRHIIVSMAQANHQITTKMQRRIYGHATDVEIRPLNEEKAVQAAVDLIGELFVFSVAGVLLIFEVQRSARSEARKEEVRKQELGAVKQKTEN--LAEEVELLKHRIQELEQM 143
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: A0A1R3I172_COCAP (Septum formation initiator n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3I172_COCAP)

HSP 1 Score: 86.7 bits (213), Expect = 2.110e-16
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = 1 
Query:   49 VAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTT-TKIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSAKEKEEKXXXXXIKKEDEKRQLAQALQDINERLA 450
            + +PL+KL ++ +KTL+KP++ K+K +A  HP FR  +    QA H ISTR+  R+  H T  +I+PL E+KA+    DL+ E F++ +   L++FEY  S++ +         KKE+ +RQ  +A++  NE LA
Sbjct:    1 MVLPLLKLGTLALKTLSKPVANKLKHQAVIHPRFRNFIVSFAQANHRISTRMQRRIYSHATDVEIRPLNEEKAVQAAVDLIGELFVFTVAGALVIFEYQRSSRSE--------AKKEEARRQELEAIKQRNEDLA 127
[Close]
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Match: A0A251S110_HELAN (Putative optic atrophy 3 protein (OPA3) n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251S110_HELAN)

HSP 1 Score: 87.4 bits (215), Expect = 2.690e-16
Identity = 52/145 (35.86%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   49 VAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNISTRISIRMAGHTT-TKIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMSSAK---EKEE--KXXXXXIKKEDEKRQLAQALQDINERLAKLEAL 465
            + +PL+KL ++ +KTL+KP++ ++K +A  HP FR  +  + QA H ++T I  R+ GH T  +I+PL E+KA+   GDL+ E F++ +    ++FE   SAK   +KEE  K     +++ DE   LA+ ++ +N+++ +LE L
Sbjct:   39 MVLPLLKLGTLALKTLSKPIASRLKQQAAIHPKFRASIIGLAQANHRLTTNIQRRIYGHATDVEIRPLNEEKAVQAAGDLIGELFVFSVAGLAVIFEVQRSAKSEAKKEEARKQELEILRRRDE--DLAKEVECLNQKIQELEQL 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLD9_9PHAE6.320e-6558.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YQK9_9STRA1.050e-1943.48Optic atrophy 3 protein-domain-containing protein ... [more]
W5CPE5_WHEAT4.950e-1836.99Uncharacterized protein n=9 Tax=Triticeae TaxID=14... [more]
A0A834TJI5_9FABA9.110e-1837.24OPA3-like protein n=1 Tax=Senna tora TaxID=362788 ... [more]
A0A5A7PGE7_STRAF2.530e-1740.74Optic atrophy 3 protein n=1 Tax=Striga asiatica Ta... [more]
UPI0010A40ABE3.240e-1735.48OPA3-like protein n=1 Tax=Prosopis alba TaxID=2077... [more]
S8CQP2_9LAMI1.120e-1632.87Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A151SAN4_CAJCA1.540e-1635.17Optic atrophy 3 protein isogeny n=1 Tax=Cajanus ca... [more]
A0A1R3I172_COCAP2.110e-1637.78Septum formation initiator n=1 Tax=Corchorus capsu... [more]
A0A251S110_HELAN2.690e-1635.86Putative optic atrophy 3 protein (OPA3) n=2 Tax=He... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3858173..3862086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.8
Seed ortholog evalue3e-16
Seed eggNOG ortholog15368.BRADI2G08470.1
EggNOG free text desc.Optic atrophy 3 protein (OPA3)
EggNOG OGs37TW6@33090,3GIBD@35493,3ICH7@38820,3KYQ3@4447,KOG3335@1,KOG3335@2759
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1296
Cds size945
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817144.0875902-UTR-P-fluviatile_contig7:3858172..38584781622817144.0875902-UTR-P-fluviatile_contig7:3858172..3858478Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3858173..3858478 -
1693571271.1603975-UTR-P-fluviatile_contig7:3858172..38584781693571271.1603975-UTR-P-fluviatile_contig7:3858172..3858478Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3858173..3858478 -
1622817144.1524425-UTR-P-fluviatile_contig7:3862041..38620861622817144.1524425-UTR-P-fluviatile_contig7:3862041..3862086Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3862042..3862086 -
1693571271.2224152-UTR-P-fluviatile_contig7:3862041..38620861693571271.2224152-UTR-P-fluviatile_contig7:3862041..3862086Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3862042..3862086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817144.0988028-CDS-P-fluviatile_contig7:3858478..38590391622817144.0988028-CDS-P-fluviatile_contig7:3858478..3859039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3858479..3859039 -
1693571271.1743493-CDS-P-fluviatile_contig7:3858478..38590391693571271.1743493-CDS-P-fluviatile_contig7:3858478..3859039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3858479..3859039 -
1622817144.1100085-CDS-P-fluviatile_contig7:3859814..38599181622817144.1100085-CDS-P-fluviatile_contig7:3859814..3859918Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3859815..3859918 -
1693571271.1834078-CDS-P-fluviatile_contig7:3859814..38599181693571271.1834078-CDS-P-fluviatile_contig7:3859814..3859918Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3859815..3859918 -
1622817144.1201332-CDS-P-fluviatile_contig7:3860730..38608181622817144.1201332-CDS-P-fluviatile_contig7:3860730..3860818Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3860731..3860818 -
1693571271.1963089-CDS-P-fluviatile_contig7:3860730..38608181693571271.1963089-CDS-P-fluviatile_contig7:3860730..3860818Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3860731..3860818 -
1622817144.130544-CDS-P-fluviatile_contig7:3861254..38613641622817144.130544-CDS-P-fluviatile_contig7:3861254..3861364Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3861255..3861364 -
1693571271.2060728-CDS-P-fluviatile_contig7:3861254..38613641693571271.2060728-CDS-P-fluviatile_contig7:3861254..3861364Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3861255..3861364 -
1622817144.1397958-CDS-P-fluviatile_contig7:3861959..38620411622817144.1397958-CDS-P-fluviatile_contig7:3861959..3862041Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3861960..3862041 -
1693571271.2140255-CDS-P-fluviatile_contig7:3861959..38620411693571271.2140255-CDS-P-fluviatile_contig7:3861959..3862041Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3861960..3862041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13709.1prot_P-fluviatile_contig7.13709.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3858479..3862041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13709.1

>prot_P-fluviatile_contig7.13709.1 ID=prot_P-fluviatile_contig7.13709.1|Name=mRNA_P-fluviatile_contig7.13709.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=315bp
MVAIPLIKLFSMTVKTLAKPMSKKMKTEAQKHPTFRGVLNRMGQATHNIS
TRISIRMAGHTTTKIKPLEEDKAIADGGDLLAEGFIYGLGTFLMVFEYMS
SAKEKEEKEAKAKIKKEDEKRQLAQALQDINERLAKLEALDQRRNQSPEI
QGGDDKGASPGRDGGILFPGRSRGLLGLRSKSTPAGGAGGEGVTTAARGA
GQGFTKDAGDESLPTSMFLPLRTIAAASAAHELRARATAPSVTDIAPTAS
EGSPRRSEGEFRPKCSSSRDWTTSATPQFWDGQSGIRGEGSTPFTGWVIG
TLGPRGIGTTCFDL*
back to top

mRNA from alignment at P-fluviatile_contig7:3858173..3862086-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13709.1 ID=mRNA_P-fluviatile_contig7.13709.1|Name=mRNA_P-fluviatile_contig7.13709.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3914bp|location=Sequence derived from alignment at P-fluviatile_contig7:3858173..3862086- (Porterinema fluviatile SAG_2381)
GGCTTGCAGACAAAAAGAAAGGTAGACCTGGGACTGCTTGCAAACATGGT
CGCAATCCCGTTGATCAAACTCTTCAGCATGACGGTGAAAACGCTGGCGA
AACCGATGTCGAAGAAGATGAAAACAGGTTAGTTTGCGCGCCAAAGAGAG
CGAGAGAAAGAGGAGATGTATCTCCTGTCGCCCGCAGTACAGAGATTCTG
CTACACTTGGACGCGTTTATGTGGGACTCGCGAGTGTTCATGCAGAAGTA
TACCTCAACACGAACACCATAAATATGCGAGGGCGTGCATTCACGTCGTG
TAATGGTTTTCCAGCGGTATGTGTTGTTGACCCCGCATCTCAGTTGGCGA
CGAATACCGTACCCCCGATACACTGGCCTTCTTCTACCGCTTCTTCTGGA
GTAGTTCGAGCGTGTGCGCCGCATGAATTTTTTGTTTTTGACAAGGAACA
CACACTTAATATAACTTGCTTGTGACATACGGGCGTTGCTTCTTCTTTAT
CGAGCCCAAATGGCTGATAAAGCGACAATGCTTTGTGTTGGATACCTCTG
GCCGAGCTTGGGGATCCTACCTCTCTCTTGCTGTCTACTCGGGAGCCCCA
CGCCTCCGCTTTGCATGCTCGACACGGCAGACCTTCCGTAACGCAGACGA
TAAATCAACGGCGTCCGCTGCGAAACCACCCCCCTTTCGTCGATTCGTGC
GCATCAAATCTGGCTCATGCAGAGGCCCAAAAGCACCCAACATTCCGAGG
GGTGCTCAACCGCATGGGACAGGCCACCCACAACATTTCGACCAGAATAT
CGATCCGGATGGCCGGGCACACCACCACCAAGGTCAGCACATGAAACCTC
TGTAGCAGAGAGAAAAAAAAGAAAACAGGAATGCCGGTAGAGGTAGAGGT
TCGTGTCAGCGATGCGCAACGTCAATAGGGTTGTACACGATAGGACGCTT
TCCGTGCGCGGTTGAATCGTTCCGGTGCTCGATATCATGCCCGTCGGGTC
CGCTCACACGACGTTGCATGCTGGTACTCAACCTCGAACTTTCCAGATTA
TGAGATGTACCGGCGGTCTGAAAAGTGTCGATGCGTCGGCCGACGCACAA
TTGGTAGTCATCCAGCCCGATTGAGGGCCCAAGAGTAGCACAGTTTGTCG
ATCAGGCACTCAGTAACATGTATGGCACCATGCCGCTGGCTGTCGCAAGA
CTAGTCAGCTCCTTCATCGAATAGTATTTGATAAATCTCTCCGCCTCTTG
TTTGTTAACTGCTCTCAGATCAAGCCGCTGGAAGAGGACAAGGCGATTGC
TGATGGAGGGGATCTTCTGGCGGAGGGATTTATCTACGGCTTGGGCACTT
TCCTGAGTAAGAACCTCGCAGGAGAACTAAGGTACTCCGGAGTAGAACCT
ACCCCAGTGAGCACCTTCTTCAGGAAAGACCTCCGTTGGTGAAAATCTTC
CTCAGTAAGAATCTTCGTCACAAAGCACCTTCGTCCGTGCGAAACTTCGT
CAGTAAGAACCTTCCTCAGTATGAACCTTCCTCAGTAGGCTTTCCTCAGA
AGCACCTGCCTTGGTCAGCACCTCTCTGTATTAAAATTTATCAGGAAGAT
CTAGTGAAGCGACAAGTGCCATGTTCGGGTGACTTATCGCGGAGCATTGT
TGTCTCGCAAAAAACAATGTATATCAACAAGCGAAAATCTACGAGCCAAA
ACAACAAGCCAAGCCAAAACCAACAAAAAATGCCAAATCAAGCACACGAA
ACAAAAGAAAGCATGCGCTTGAAATTCATCGCGATCCCATTGAATACCGA
AGATTTCTTACCTCCACAAAGCCGGTATGGGGCATCTTACCACTTGGGAG
GCCGACTTCAGTTCCTGTACGATATGCGTTCGGATCCCCGACACGGCAAT
CCCAGTTGTGGACATCCGTAAATCCCTCCGACTTGAGTTCTGGAAGCTGC
AGACGGTGTAAGGGGAACCGCTTTTTCATCACATATCGAGCGTGGGAATT
CCATGTCGGGGGTCATGTTTCCATGTTTCCGCACCTGCACATTTCATTGG
CATTGGGCGACTTGTTCGCACGCCGTCGCTCGCCAGCGTTTGCTATGCTG
CTTCTTGATGCTGAAGGTGAACTTTCGCTGACTTCCCGCTTCTGAATAAA
ACCCCAATGGACAACCAGTGGTGTTCGAGTACATGTCCAGTGCTAAAGAG
AAGGAGGAGAAGGAAGCCAAGGCCAAAATCAAGAAGGAGGATGAGAAGCG
GCAGTTGGCTCAAGCCTTGCAGGCGAGTGTTGAATTTGAAATCGTAAGCA
TTGCGCCATTCCAACCATCTTCGGTGAGCTGTATGTTCCATAATGTTTTT
TGCTGGGACACCTTGAGCCACGTCGACGCATGGCATATCGTCTTGTCCTC
ATCATTGAAATGACAGGGCGGCGGGGGATAGATGCAAGGTTTTTTATAAT
GACACCTCGAACGGCAATTTCCGCAGACCCAAGGCTAGAGCTTCTGCTTG
CGCCTTTTTTTTGCATATGGCAGCAGGATATTCTCATTTTGTACTAGTTC
TGTTTCCCTTACCTGATTTGGTTCCTCTTCAATTGGCACTTACCTGTGTG
CCGGAATGGACACGACTGCGATCACAGCCAGGCACATTCTCCTTGTAAGT
GATTTTCTCCTTTGCTAGCCGTAACAAGACGCTACAGGCCAAGACTTCGT
CGCTGTAGACTTTCCTGTTGATCTGCACACTCGTGAGATTCCTCAAAGGA
GGCAGACAGGCCAGCGAAAGCTTCAGAAGGGAGGTCAGAAATGTAACACC
TTGCTCAAACTCGCTGTTGTAACCTCGGCGGTGCTGGTACGATGTATATG
TATCGTCAAGATCACCGCGCCTCCGCCTGCACGTCGCATTTTTGTGAACG
ATGGCTGTGTCGGCCATCACGATTTTTTTGGTAATCCCATGAACGCGTTT
GTCGACAACGCCCTAATTAGTGTTGTCCTTGATGATGGCTCCTCGTTACT
GCCGCTGCTGCTGCTCCTGCTGCCATCGCCCCCACTGTACAAACCAGGAC
ATCAACGAACGACTGGCGAAACTAGAAGCCTTGGACCAACGACGCAACCA
ATCGCCCGAGATACAAGGAGGGGACGACAAAGGCGCATCCCCTGGAAGAG
ACGGTGGCATTTTATTCCCTGGGCGGAGCAGAGGGCTCCTCGGTCTTCGG
AGCAAGTCGACGCCAGCAGGGGGGGCGGGCGGAGAAGGAGTTACCACAGC
AGCACGAGGAGCCGGGCAAGGTTTCACGAAGGACGCAGGGGACGAATCAC
TTCCCACCAGCATGTTCCTTCCTTTGAGGACAATCGCTGCTGCTTCAGCA
GCGCATGAGTTAAGAGCGAGGGCTACGGCGCCAAGCGTGACGGACATTGC
TCCAACGGCGAGCGAGGGCTCGCCTCGGAGGTCGGAGGGTGAATTTAGAC
CCAAATGCTCCAGCTCAAGGGACTGGACCACCTCGGCAACTCCACAATTT
TGGGATGGACAATCGGGTATCAGGGGAGAAGGTTCGACGCCCTTCACGGG
ATGGGTTATTGGAACTTTGGGACCAAGAGGGATCGGGACGACTTGCTTTG
ACTTGTAACCCTGTTCCAACCGACTCCGGCAGTCTGTTGTTTCCTTTCTC
TCCTTCCGAGACCTGACCCATCGCCGTCTGCGCTCTGCGGCGACAAGGCT
ATCATCGAGAGAGGCCTTGAGGTACTTTCGGCAAAAGCAGTACGGGTATT
GGCACTGCTGTGAACAAGGTTTTCACCTTCCAGAGGTGTGCACGTTACGC
CAGCGTTGTCTACTGGCACTCAAAACTTTCGATTCTGTGAGATACGGTTC
GAAAACGACGGTGCGGGCCCGGCTTCACGTTTTGTCGCCGGCGGAGGGAT
CTAATTGAAGGCGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig7:3858173..3862086-

>mRNA_P-fluviatile_contig7.13709.1 ID=mRNA_P-fluviatile_contig7.13709.1|Name=mRNA_P-fluviatile_contig7.13709.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1890bp|location=Sequence derived from alignment at P-fluviatile_contig7:3858173..3862086- (Porterinema fluviatile SAG_2381)
ATGGTCGCAATCCCGTTGATCAAACTCTTCAGCATGACGGTGAAAACGCT
GGCGAAACCGATGTCGAAGAAGATGAAAACAGATGGTCGCAATCCCGTTG
ATCAAACTCTTCAGCATGACGGTGAAAACGCTGGCGAAACCGATGTCGAA
GAAGATGAAAACAGAGGCCCAAAAGCACCCAACATTCCGAGGGGTGCTCA
ACCGCATGGGACAGGCCACCCACAACATTTCGACCAGAATATCGATCCGG
ATGGCCGGGCACACCACCACCAAGAGGCCCAAAAGCACCCAACATTCCGA
GGGGTGCTCAACCGCATGGGACAGGCCACCCACAACATTTCGACCAGAAT
ATCGATCCGGATGGCCGGGCACACCACCACCAAGATCAAGCCGCTGGAAG
AGGACAAGGCGATTGCTGATGGAGGGGATCTTCTGGCGGAGGGATTTATC
TACGGCTTGGGCACTTTCCTGAATCAAGCCGCTGGAAGAGGACAAGGCGA
TTGCTGATGGAGGGGATCTTCTGGCGGAGGGATTTATCTACGGCTTGGGC
ACTTTCCTGATGGTGTTCGAGTACATGTCCAGTGCTAAAGAGAAGGAGGA
GAAGGAAGCCAAGGCCAAAATCAAGAAGGAGGATGAGAAGCGGCAGTTGG
CTCAAGCCTTGCAGTGGTGTTCGAGTACATGTCCAGTGCTAAAGAGAAGG
AGGAGAAGGAAGCCAAGGCCAAAATCAAGAAGGAGGATGAGAAGCGGCAG
TTGGCTCAAGCCTTGCAGGACATCAACGAACGACTGGCGAAACTAGAAGC
CTTGGACCAACGACGCAACCAATCGCCCGAGATACAAGGAGGGGACGACA
AAGGCGCATCCCCTGGAAGAGACGGTGGCATTTTATTCCCTGGGCGGAGC
AGAGGGCTCCTCGGTCTTCGGAGCAAGTCGACGCCAGCAGGGGGGGCGGG
CGGAGAAGGAGTTACCACAGCAGCACGAGGAGCCGGGCAAGGTTTCACGA
AGGACGCAGGGGACGAATCACTTCCCACCAGCATGTTCCTTCCTTTGAGG
ACAATCGCTGCTGCTTCAGCAGCGCATGAGTTAAGAGCGAGGGCTACGGC
GCCAAGCGTGACGGACATTGCTCCAACGGCGAGCGAGGGCTCGCCTCGGA
GGTCGGAGGGTGAATTTAGACCCAAATGCTCCAGCTCAAGGGACTGGACC
ACCTCGGCAACTCCACAATTTTGGGATGGACAATCGGGTATCAGGGGAGA
AGGTTCGACGCCCTTCACGGGATGGGTTATTGGAACTTTGGGACCAAGAG
GGATCGGGACGACTTGCTTTGACTTGTAAGACATCAACGAACGACTGGCG
AAACTAGAAGCCTTGGACCAACGACGCAACCAATCGCCCGAGATACAAGG
AGGGGACGACAAAGGCGCATCCCCTGGAAGAGACGGTGGCATTTTATTCC
CTGGGCGGAGCAGAGGGCTCCTCGGTCTTCGGAGCAAGTCGACGCCAGCA
GGGGGGGCGGGCGGAGAAGGAGTTACCACAGCAGCACGAGGAGCCGGGCA
AGGTTTCACGAAGGACGCAGGGGACGAATCACTTCCCACCAGCATGTTCC
TTCCTTTGAGGACAATCGCTGCTGCTTCAGCAGCGCATGAGTTAAGAGCG
AGGGCTACGGCGCCAAGCGTGACGGACATTGCTCCAACGGCGAGCGAGGG
CTCGCCTCGGAGGTCGGAGGGTGAATTTAGACCCAAATGCTCCAGCTCAA
GGGACTGGACCACCTCGGCAACTCCACAATTTTGGGATGGACAATCGGGT
ATCAGGGGAGAAGGTTCGACGCCCTTCACGGGATGGGTTATTGGAACTTT
GGGACCAAGAGGGATCGGGACGACTTGCTTTGACTTGTAA
back to top