mRNA_P-fluviatile_contig12.1486.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1486.1
Unique NamemRNA_P-fluviatile_contig12.1486.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2277305..2284140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size819
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1486.1prot_P-fluviatile_contig12.1486.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2277305..2277745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.6895726-CDS-P-fluviatile_contig12:2277304..22777451622815489.6895726-CDS-P-fluviatile_contig12:2277304..2277745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2277305..2277745 -
1693562048.0868611-CDS-P-fluviatile_contig12:2277304..22777451693562048.0868611-CDS-P-fluviatile_contig12:2277304..2277745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2277305..2277745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.7006457-UTR-P-fluviatile_contig12:2277745..22778721622815489.7006457-UTR-P-fluviatile_contig12:2277745..2277872Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2277746..2277872 -
1693562048.0942316-UTR-P-fluviatile_contig12:2277745..22778721693562048.0942316-UTR-P-fluviatile_contig12:2277745..2277872Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2277746..2277872 -
1622815489.715372-UTR-P-fluviatile_contig12:2283890..22841401622815489.715372-UTR-P-fluviatile_contig12:2283890..2284140Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2283891..2284140 -
1693562048.1017811-UTR-P-fluviatile_contig12:2283890..22841401693562048.1017811-UTR-P-fluviatile_contig12:2283890..2284140Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2283891..2284140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1486.1

>prot_P-fluviatile_contig12.1486.1 ID=prot_P-fluviatile_contig12.1486.1|Name=mRNA_P-fluviatile_contig12.1486.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=147bp
MTPTYLVSVLSKIWHVAVNAALRYASPGRSGRETSPVLSVRETMPSPASS
PLRAFTPPWRSSILSPLIVSLMLGERYCAEPLPFVSLVAPVYRFSRSHWA
SSEPFLLTFTVSFMVANGIGSKWDKILRTTSCFPSNLSSNMTHATTP
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mRNA from alignment at P-fluviatile_contig12:2277305..2284140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1486.1 ID=mRNA_P-fluviatile_contig12.1486.1|Name=mRNA_P-fluviatile_contig12.1486.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6836bp|location=Sequence derived from alignment at P-fluviatile_contig12:2277305..2284140- (Porterinema fluviatile SAG_2381)
ACCTCGAAAAACCACGCCGGGACGCGAATTTCCTTCTCCAGGCCTTCTTT
GCGCAGCAAATCCTGCGCTTCTTTCACCCGTGTCTCCCGCTCTACTCTGG
CCCAGTTGTTGGTGATGTGGGAACCGAAGATCAATACCCCCGGACATTTT
TCGAGCAGTGTCGTATTGGAAGGCGCCACCGGGCCAATCTCTGTGTACAC
GCGTAACGTGCCGTAGAGCATGCGTCGGCGTAGGCCGCCGAGGGAGGGTA
GCATGTATTCGTATATTTGGATTCGGGTTGGTGTGGATCTACCGGCAACG
ACGGAGGGCACGAAGATGGGGCATATGTACACCTTGAAATGGTTGCATGT
GCGGGGACCCCTCGAACTCCACAGAGGGTTCATCTCCTCCCTACTCCCCT
TGCGTGTCTAATACAAGAGATAAAACGTCTTCCCCTTCCAAGTAAAGGAC
CAATACCAACACACTAGTGTTTATCCCTCGAGGGAGTCCATTAGGAATGG
CAGGTAGCAATGACGGGGAAGAGCCCCCGCGCGAGCTTGCGGTGGAAGGC
AACCCGAGGTCCACAGAAGAGGTAGCGGACCTGAGAAGAGAAGTTGGCAC
GCTGACAGAACAGGTGAGCCAGCTCATGCTGCTATTCCAAAGCAGCATGC
AGGCACACACGAGAGAGGAGCCAGCTGGCACCATGGAGGGTGCCGCTGAT
CGCGGCGGCGCTACGGAGAGCGCCGACGCGAGAGCCGCGAGAGCCCAGGA
GGGGGCACCGCGGCCTGGGAGTGCGCGGGACGAGGAGTACCCGCGCGAAC
ATTTTCGAGAGTCTGGCCCCTCGGGGCGACACAGCGGCGAAGCAGGGGGT
TTCGACCCCCGAGAGGTGAGAGTAGCCGCTGCTCACAGTCAGGGAAGTTA
TGGTAGTGCCCCGGGAGGAGTGGGCACTGCTGTAGGTTTTGGATATGGAG
CCACCACCCTGCGGGGTACCAAAGTGTACGGTACACTTCTCCTTCGTTCA
GTGGAAACGCGAAGGATTTCAATAGGTGGCTCGAGGATTTCACCATGGCC
GCAAATGCGGCAAACCTGATAGAGCAATTCGAGGAAAGCGGGGGTGTGGA
GATCCCCGTAAACAGCGGACAGAGCAAGTCTTCGCTGTCACAGCAGTACG
GGAGCGAGCAAGTAGAACTCGCATTCCACGCGTGGAACTTCCTGTATCAC
GCGTTAAAAGAAAAAGACAGAGAAATCATGAAGAGGGCAGAGACGCCCCA
GGGTGCACTCCGTGAACTAAATGATATTTACGATCCTGAGTCATCGGTGC
AGCCGTCAGATGACCTCAAGTCCTTGACGTCAACCAAGATTCCTAGAGCA
GCAAATCCCCAAAATGCTCTGAACGAGATGCTACGGACTGCAAAGTCCTT
AACTGCGAAGGGACTAACTGTCAACGAAACGTTTGTCCTTCACCTCTTCC
TGGATGCCCTTCCCGACGAGTACTCCATGACTAAGCACAACCTGCGGCAC
GCAAGAGAATTGACGCGGGCCGGTGTGCTCAAGGAGGTAATGATCGAGTA
CAAGGCGATAAGGGATAGGCTAGAGCAGGGGAAAGGGAAGGGGCAAAGGG
CGCAGAGCAAGCGTACCTCGCCGATGGCAAGGAGCGGTCCTCGAGGAGCC
AGGGGCAAGGCCGTGGTCGTGGTGGCGGCCGCGGCCGCAGTAGCAGTCGC
GGTCGCGGCGGCCGCGTCGGTCGCGGTAACGGAGGTGGCGGTCGTGGGGG
CCGCACAGGTGGACCCGGAGGGGTCGAGGAGAGCAAGGGAGGCAGCAGTG
GAGGCGCCGATGGCGGCGATGGCGTGGGCTACAGGTTCACGGGCCGGTGC
TTCAGGTGTGGACATCGTGGACACCACGCGTTCGGCTGCACCACCAGCGA
AAAGGACTTTGTACCGTGGTGTGAGCGATGCGGGGGGGGCCACACCAAGG
ACAAGTGCTCGACGGAGGAGGCTGTCCTAGCGGAGGTGGTGGAGCAGGAG
AGCGACGTGGATTCCGTGGAAGACCAGGCGTTCTGCGCCGTGGCAGGCCA
TCCAGGCAAGTGTGGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGG
AACAAGGCCAGGCGATGTACGTGGCCGACACAGCGGCCACGTGCTCCATG
TTTCGTTGTGCGGACCACTTCGTCAACTACCGTGAGTGTAGCGGTTGGGT
GAAGGGGATCGGGGCGACAAATCCCCGTTCCTCTTCTAGGATACGGAGAT
GTGACCGTAGTCCTACAGACGGATGATGGTGGAGTACCTGTACCTGTGCC
GAATGCTGCCCACGTCCCAGAGGCCCCCTACAACCTCCTATCTCTGTCTA
CGCTGGCTGAGGAGGGCCACACGTATTCGGGGACGAAAGGGGGCCTCACG
CTGACCACGAAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGCT
TCTGACCCAGCGAGGCTATCAAGTAGAGCCAACGCTAGACATCGCCTGTG
CCGCAATCATTGTTCCTGGCGATGCGAAAGCAGCCACCCCCACTGACCTC
AACGAGTACCACCTTGCACACGGCCACGTCCACGAGAAAGCGCTCAGGAC
AACGGCGGAGCAGCAGGGCGTGCAGCTGACGGACGGACCGCTGCTACCCT
GTATTGGCTGCTCCATGTCCAAGGGGCAGGTGAAACCTGTTAAGACGAGC
ACGAGCACGCGCGCAGTTAAGAAGCTATTCCGCGTTTACCTCGATTTGGG
GGGCAAGATGCAAATCAGGAGCATTGGAGGCAACTGGTACACGCTGATCA
TCAGAGATGATTTCTCACGTTGGACGCGTGTTTTCTTCCTGAAGCGAAAA
TCTGACGCAGCTGTTGGGTTTGAGAAGTTCCTGGCGGACTACCGAACGAA
AGGGGTTCCGTGTGAGGTTTATATCGCACGAACCGACGGTGGCGGAGAGT
TTCAGGGGCAGTTTGCGGAAGTTTGTCGCAGACACGGCATCAAACAAGAG
TTCACACCCCCTCACACCCCAAAAATACAATGGTGTAGCGGAGAGAGCGC
TGGGGATGATCACTGATGCCGCGCTTGCGTCACGCATACAAGCGACGCAA
ATGTTCCCCGACGCACCGAACAACCCCGGGTTGTGGGCCGAGGCCATTTC
GTGTGCGTGCCACCAGCTGAACTGCACGTCAACTACCGCAAACGAGGGAA
ACAAATCCCCCTACGAACTATTTCACGGTTCACCGCCGCCGGTCGGGGCT
ACATACCCGTTCCTCAAACCCGCCGTGTTCAAATCGAGAAGAGAGACAAA
GTCGCAAACCCAAGGGCGCAAAAGGATGGTACCTTGGGCCTGCCCACAAT
CACCCCAGTGACTGCGTTCGCATGCTAACGGAAGCTGGAACCGTAATCAC
CACCCGCAATTTTACCTGGCGCCAAGTGCCCGCGGCATCGCCCGCTTCCC
CGCAGCTGCTACCTCTCGCAGATGCGGAGGGCGGGGAGGGCGAGAGCGAG
AGCGAGAGCGGAGTGGATGCACCACGCCAAGGTTCGGGGGTGACTCGGAG
AGTGAGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCAAGCGAC
GCCGTGTGTGCGCGATAAGGCGCCAACGGCACCCGGCAACGGGATCCTGG
GGACGGAGGCAGCCGTCCCCCGTCGCCTCCTTCGGGAGGGGGCGACTTCG
GCGGCGGCGATGATAGCCCCACCGACAGCAGCAGCAGCAGCCCGAGCAGC
AGCAGCAGCGACTCCAGCCGCGCCGGCGGAAACGGCGGCGGCGGCGATGG
AGGGAGCGAGTTCAGCCCCGGCGACGAAGGAGAGGCCGGCGGCTCGGACG
GCGACGAGCCCGGTGACCCAGGTGGGGATGATAGCGGCGGTGATATCGAG
GAGCTGAAGTATGATCCAGCCGACGCCCGCTATCCCTCCGGGGTACAGGG
GAAGAAACTCCTCTGGGGCGCGTCCAGTGCTGGCCCGCTGCGCCATGGGC
TTGAGCCTGGCCGCACGCGGAAGCAGACCCGGGAGATGCATGGCACCGAG
GAGGCACCGGGGCCCGGAGAAACACCTGACCCGGAAGAGGCGCTGCTGGC
GACCGTCCTTGAAACTGGCGGGATGGAGATTGTTCAGGAGTACATCTGCA
ACTCGCTTGTGAAGGAACGGTGGGAGGAGGAGCAGACGCGCCGGATGGAG
GAGATGTCCAGGCGCGAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCAGGC
ATTCGAGGCCGAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAGACC
CGCAGCTAAGTATACCCTCGCCAATCGGGCAGAAACCGTGTGATGTGGAA
GCGTTACCGATGACGTACAAGGATGTGACGTGTTCGAAGTACAAGGTTTT
CTGGGATGCGGCCATCAAGAAAGAGATAGATGGTCAAAACAAGGTCGGGA
CATTCACGAAGGTCAAAGGGCTGCCCGAGGGGCGGAAGGCCATAGGTTCA
AAGTGGATATTCTCGTGGAAGACGAACGAGAAGGGTCTGATAACTGACTT
TAAGGCCCGTTTGGTTGCACGGGGTTTCTCGCAAATCCCGGAATAGACTA
CCACCATTCATCGTCGGCATGCCCAGCTGCATCGTCTATCAAGTCGGTGA
TAGCCGTAACCAACGAGAAGGGCAAGAAAGTTGCCCACTGGGATGTTAAG
CAAGCATACATCCACGCCAAACTGAAAGAGGAGATATACCTCAGGCTTCC
GGAAGGGTGTAGTAGCATGTCTGGCAAGGTGGTCAAGGTTGAGCGTGCCC
TGTATGGTCTGAAGCAGAGTGGTCGAGAGTGGGGGTTTGAAGCTGCTGAT
GCCCTCATCGAAAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTCTT
CCGTAAGATGGTGGATGGAGAGGTCGTAGGTCTGATTGTGATCTACGTTG
ATGACATCTTGGTGGCGGCAGACGAGGGAGAGCGAAAGGAGTTGTTCGCA
TCCCTCAACAAGAAGTTCCCGGTGAAGGATTTGGGGGACTGCACGTGGTA
TGACGGGTGTGCGATTGAGATGGATGTAGAGAACGGCATCACCAAGCTTT
CGCAAACAGCATACATCGAGAGCATGCTGAAGCGGTTTGATGTGACCACA
ACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGCCAAAGAGAGA
TGACGAGCCCGCGGTGGATAAACCGGTGAGGGAGGCAATCGGATGCCTGA
TGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAATAAGCTC
CAGAAGGTCGCCCACTCACCCACCTAGAGGATACGGGAAGCGGTCGTGAG
GATCATGTCCTACCTGAACCACACGAAAGACTTCGGCATCACCTACGTAA
GGGGATCAGGAATAGACCTAAGCGTTTTTGTTGACGCCAGCTACGCTGAC
GACAAAGTAGACAGGCGTTCGACGACGGGGCTAGCCGTGACCGTAGGTGG
TACAGTGGTGAGTGCATCCACGAAGACGCAGCCAGTGACGGCCCAGTCAA
CCTCGGAAGCAGAGTATGTGGCAGCCGGGGAGGGCGTGAAGGAGGCGTTA
TTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCTGAGACGAGTGAGGCGAA
GATCAGGGTCCGTGAGGACAACAAGGGTGCTCTCCGTCTAATAGAGAACC
CGTTCAGCTCGGCGAGGAGCAAGCACATCGACGTGCGGTTCCATTTCATT
CGTGAGCTGTTCAAGTCGGGCAAAATCACTGCAGACTTTGTCCCGACTGG
AGAGCAGCACGCCGACATGCTGACCAAGGTGCTTGGCAGAGAGAAGCTAG
AGTACCACCGGAAGGCTCTGATGAACCTACCGATGTAGTGTCCTTTGTGA
TTGCAATGGTTTGTTTTGTTTGAGATATAGGCGAGGGTTTTTGATCCGGT
TGGCCGGGTTTTCCCTTGCACCTGTCGTTGGTTTTTTTGAGTCAATTTGG
TAGGTCAGGAGTATCCATGCCCCACGTTGGGTTTGCCATTAGCGTGGCAA
ACCGGGGAGGGTATTCGTATATTTGGATTCGGGTTGGTGTGGATCTACCG
GCAACGACGGAGGGCACGAAGATGGGGCATATGTACACCTTGAAATGGTT
GCATGTGCGGGGACCCCTCGAACTCCACAGAGGGTTCATCTCCTCCCTAC
TCCCCTTGCGTGTCTAATACAAGAGATAAAACGTCTTCCCCTTCCAAGTA
AAGGACCAATACCAACAGCATGTCCTGAGCGATTTTTGTCTTGAACAGCT
TCGTCTCGGAGGGTAGCATGTCCTTAGTGATTCTGTTTTTGAACAGGTTC
ATCTCGTACTTCTGCGCGCAGCCAGAGTGAACCACCGTTCCGTGAATGAC
GCCGACGTATTTGGTGTCTGTTTTGTCGAAGATCTGGCACGTTGCCGTCA
ACGCGGCCTTAAGGTATGCGTCGCCAGGGAGGAGCGGCCGGGAAACCTCT
CCAGTTTTGAGCGTGCGGGAAACCATGCCATCTCCCGCGAGCTCTCCCTT
GCGAGCTTTTACGCCTCCCTGGCGGAGCAGCATCCTGTCTCCGCTGATCG
TCTCTCTGATGCTCGGCGAGAGGTACTGTGCCGAGCCTTTGCCCTTTGTA
AGCTTGGTCGCTCCAGTGTACCGCTTCTCCAGGAGCCACTGGGCGAGCTC
AGAGCCGTTCTTACTCACCTTCACTGTCTCTTTTATGGTGGCAAATGGGA
TTGGGTCCAAGTGGGACAAGATCTTGAGAACCACGTCATGCTTTCCGTCT
AATTTGTCCTCCAACATGACGCACGCAACCACACCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2277305..2284140-

>mRNA_P-fluviatile_contig12.1486.1 ID=mRNA_P-fluviatile_contig12.1486.1|Name=mRNA_P-fluviatile_contig12.1486.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=882bp|location=Sequence derived from alignment at P-fluviatile_contig12:2277305..2284140- (Porterinema fluviatile SAG_2381)
ATGACGCCGACGTATTTGGTGTCTGTTTTGTCGAAGATCTGGCACGTTGC
CGTCAACGCGGCCTTAAGGTATGCGTCGCCAGGGAGGAGCGGCCGGGAAA
CCTCTCCAGTTTTGAGCGTGCGGGAAACCATGCCATCTCCCGCGAGCTCT
CCCTTGCGAGCTTTTACGCCTCCCTGGCGGAGCAGCATCCTGTCTCCGCT
GATCGTCTCTCTGATGCTCGGCGAGAGGTACTGTGCCGAGCCTTTGCCCT
TTGTAAGCTTGGTCGCTCCAGTGTACCGCTTCTCCAGGAGCCACTGGGCG
AGCTCAGAGCCGTTCTTACTCACCTTCACTGTCTCTTTTATGGTGGCAAA
TGGGATTGGGTCCAAGTGGGACAAGATCTTGAGAACCACGTCATGCTTTC
CGTCTAATTTGTCCTCCAACATGACGCACGCAACCACACCCATGACGCCG
ACGTATTTGGTGTCTGTTTTGTCGAAGATCTGGCACGTTGCCGTCAACGC
GGCCTTAAGGTATGCGTCGCCAGGGAGGAGCGGCCGGGAAACCTCTCCAG
TTTTGAGCGTGCGGGAAACCATGCCATCTCCCGCGAGCTCTCCCTTGCGA
GCTTTTACGCCTCCCTGGCGGAGCAGCATCCTGTCTCCGCTGATCGTCTC
TCTGATGCTCGGCGAGAGGTACTGTGCCGAGCCTTTGCCCTTTGTAAGCT
TGGTCGCTCCAGTGTACCGCTTCTCCAGGAGCCACTGGGCGAGCTCAGAG
CCGTTCTTACTCACCTTCACTGTCTCTTTTATGGTGGCAAATGGGATTGG
GTCCAAGTGGGACAAGATCTTGAGAACCACGTCATGCTTTCCGTCTAATT
TGTCCTCCAACATGACGCACGCAACCACACCC
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