mRNA_P-fluviatile_contig12.1484.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1484.1
Unique NamemRNA_P-fluviatile_contig12.1484.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1484.1 vs. uniprot
Match: D7FVU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = -2 
Query:    2 QTEIFDAVERVEVEDGWVSMRLREDMGS 85
            +TEIFDAVERVEVEDGWVSMRLRED GS
Sbjct:  167 KTEIFDAVERVEVEDGWVSMRLREDKGS 194
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BLAST of mRNA_P-fluviatile_contig12.1484.1 vs. uniprot
Match: D7G246_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G246_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 9.190e-5
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = -2 
Query:    2 PFSPPLRL--QTEIFDAVERVEVEDGWVSMRLREDMGS 109
            PF   L+   +TEI+DAVER+EVEDGWVSMRLR D G+
Sbjct:  502 PFGTVLKATGRTEIYDAVERIEVEDGWVSMRLRNDTGA 539
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVU8_ECTSI1.700e-692.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G246_ECTSI9.190e-565.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2265252..2265739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size480
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.604823-UTR-P-fluviatile_contig12:2265251..22652591622815489.604823-UTR-P-fluviatile_contig12:2265251..2265259Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2265252..2265259 +
1693562048.070663-UTR-P-fluviatile_contig12:2265251..22652591693562048.070663-UTR-P-fluviatile_contig12:2265251..2265259Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2265252..2265259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.618147-CDS-P-fluviatile_contig12:2265259..22657391622815489.618147-CDS-P-fluviatile_contig12:2265259..2265739Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2265260..2265739 +
1693562048.0788162-CDS-P-fluviatile_contig12:2265259..22657391693562048.0788162-CDS-P-fluviatile_contig12:2265259..2265739Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2265260..2265739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1484.1prot_P-fluviatile_contig12.1484.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2265260..2265739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1484.1

>prot_P-fluviatile_contig12.1484.1 ID=prot_P-fluviatile_contig12.1484.1|Name=mRNA_P-fluviatile_contig12.1484.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=160bp
MSSRSRIETQPSSTSTRSTASKISVWRRKGGEKGMGWYIEVAKKYTVQIS
FSGGRKIMNLPTLEKQPTRETSNFDEETTGQAAPENNHNASDDPSISNEP
LQHKTSLTPMTMSTTKQLPTAHRPPLCCLVSDLASSLKNGPERCDSDYPA
LIDIRLAPHE
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mRNA from alignment at P-fluviatile_contig12:2265252..2265739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1484.1 ID=mRNA_P-fluviatile_contig12.1484.1|Name=mRNA_P-fluviatile_contig12.1484.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=488bp|location=Sequence derived from alignment at P-fluviatile_contig12:2265252..2265739+ (Porterinema fluviatile SAG_2381)
CAGACCCCATGTCTTCTCGCAGCCGCATCGAAACCCAGCCGTCCTCGACC
TCTACTCGCTCCACCGCGTCAAAAATTTCCGTCTGGAGGCGCAAAGGTGG
GGAGAAGGGGATGGGGTGGTACATAGAAGTGGCGAAGAAATATACGGTGC
AGATTTCATTCTCAGGCGGTAGAAAGATTATGAACCTCCCGACCTTGGAG
AAACAACCAACCCGCGAAACTTCAAACTTTGACGAAGAAACGACAGGGCA
AGCAGCCCCAGAAAACAACCACAACGCCAGCGACGATCCTAGCATCAGCA
ACGAACCACTGCAGCACAAAACAAGCCTAACACCCATGACTATGAGCACA
ACAAAACAACTACCAACAGCACACCGTCCCCCACTTTGCTGCCTTGTCTC
TGACCTTGCCAGTAGCCTTAAGAACGGTCCCGAACGGTGCGATTCTGACT
ATCCGGCCTTGATCGATATCCGGCTAGCTCCGCACGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2265252..2265739+

>mRNA_P-fluviatile_contig12.1484.1 ID=mRNA_P-fluviatile_contig12.1484.1|Name=mRNA_P-fluviatile_contig12.1484.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=960bp|location=Sequence derived from alignment at P-fluviatile_contig12:2265252..2265739+ (Porterinema fluviatile SAG_2381)
ATGTCTTCTCGCAGCCGCATCGAAACCCAGCCGTCCTCGACCTCTACTCG
CTCCACCGCGTCAAAAATTTCCGTCTGGAGGCGCAAAGGTGGGGAGAAGG
GGATGGGGTGGTACATAGAAGTGGCGAAGAAATATACGGTGCAGATTTCA
TTCTCAGGCGGTAGAAAGATTATGAACCTCCCGACCTTGGAGAAACAACC
AACCCGCGAAACTTCAAACTTTGACGAAGAAACGACAGGGCAAGCAGCCC
CAGAAAACAACCACAACGCCAGCGACGATCCTAGCATCAGCAACGAACCA
CTGCAGCACAAAACAAGCCTAACACCCATGACTATGAGCACAACAAAACA
ACTACCAACAGCACACCGTCCCCCACTTTGCTGCCTTGTCTCTGACCTTG
CCAGTAGCCTTAAGAACGGTCCCGAACGGTGCGATTCTGACTATCCGGCC
TTGATCGATATCCGGCTAGCTCCGCACGAAATGTCTTCTCGCAGCCGCAT
CGAAACCCAGCCGTCCTCGACCTCTACTCGCTCCACCGCGTCAAAAATTT
CCGTCTGGAGGCGCAAAGGTGGGGAGAAGGGGATGGGGTGGTACATAGAA
GTGGCGAAGAAATATACGGTGCAGATTTCATTCTCAGGCGGTAGAAAGAT
TATGAACCTCCCGACCTTGGAGAAACAACCAACCCGCGAAACTTCAAACT
TTGACGAAGAAACGACAGGGCAAGCAGCCCCAGAAAACAACCACAACGCC
AGCGACGATCCTAGCATCAGCAACGAACCACTGCAGCACAAAACAAGCCT
AACACCCATGACTATGAGCACAACAAAACAACTACCAACAGCACACCGTC
CCCCACTTTGCTGCCTTGTCTCTGACCTTGCCAGTAGCCTTAAGAACGGT
CCCGAACGGTGCGATTCTGACTATCCGGCCTTGATCGATATCCGGCTAGC
TCCGCACGAA
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