mRNA_P-fluviatile_contig12.1597.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1597.1
Unique NamemRNA_P-fluviatile_contig12.1597.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1597.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.460e-19
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   49 EDLGRILRPTRTRVWTDVCATFFGFRSCFKNGIDRVSKE 165
            EDLGR+LRPTRTRVWTDVCATFFGFRSCFKNGIDRVSKE
Sbjct:  431 EDLGRVLRPTRTRVWTDVCATFFGFRSCFKNGIDRVSKE 469
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE6.460e-1997.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3427065..3427416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size150
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1597.1prot_P-fluviatile_contig12.1597.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3427065..3427401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.6343658-CDS-P-fluviatile_contig12:3427064..34271451622815488.6343658-CDS-P-fluviatile_contig12:3427064..3427145Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3427065..3427145 -
1693562046.9807422-CDS-P-fluviatile_contig12:3427064..34271451693562046.9807422-CDS-P-fluviatile_contig12:3427064..3427145Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3427065..3427145 -
1622815488.6465564-CDS-P-fluviatile_contig12:3427332..34274011622815488.6465564-CDS-P-fluviatile_contig12:3427332..3427401Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3427333..3427401 -
1693562046.9902835-CDS-P-fluviatile_contig12:3427332..34274011693562046.9902835-CDS-P-fluviatile_contig12:3427332..3427401Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3427333..3427401 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.6563346-UTR-P-fluviatile_contig12:3427401..34274161622815488.6563346-UTR-P-fluviatile_contig12:3427401..3427416Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3427402..3427416 -
1693562046.9998875-UTR-P-fluviatile_contig12:3427401..34274161693562046.9998875-UTR-P-fluviatile_contig12:3427401..3427416Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 3427402..3427416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1597.1

>prot_P-fluviatile_contig12.1597.1 ID=prot_P-fluviatile_contig12.1597.1|Name=mRNA_P-fluviatile_contig12.1597.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=50bp
MSDIGDGHDSGEDLGRILRPTRTRVWTDVCATFFGFRSCFKNGIDRVSKE
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mRNA from alignment at P-fluviatile_contig12:3427065..3427416-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1597.1 ID=mRNA_P-fluviatile_contig12.1597.1|Name=mRNA_P-fluviatile_contig12.1597.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=352bp|location=Sequence derived from alignment at P-fluviatile_contig12:3427065..3427416- (Porterinema fluviatile SAG_2381)
GGCGATGCGGGTGGAATGAGTGACATTGGTGATGGCCATGACTCCGGTGA
AGATCTTGGACGCATCCTGAGGCCGACAAGGACGGTACGTCATGGTGTTG
TTTTCGCGTCCATAAGAGTTCCCCCCAAGTTCCAAAGTTAGCGCTTGGCG
TAGACACATTATTTAGCACTCGTTGCCAGACATTCCCGTGGTTTGTCTAC
TCCTTGTCGTACCCTCATTTTGTCACACGTTTCCATCCTGGTGTTCGAAA
TTTTCCTTGGTTTATTTTCAGAGAGTGTGGACGGACGTGTGCGCCACGTT
TTTTGGGTTCCGCTCGTGTTTCAAGAACGGGATCGACCGCGTGTCGAAGG
AG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3427065..3427416-

>mRNA_P-fluviatile_contig12.1597.1 ID=mRNA_P-fluviatile_contig12.1597.1|Name=mRNA_P-fluviatile_contig12.1597.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=300bp|location=Sequence derived from alignment at P-fluviatile_contig12:3427065..3427416- (Porterinema fluviatile SAG_2381)
ATGAGTGACATTGGTGATGGCCATGACTCCGGTGAAGATCTTGGACGCAT
CCTGAGGCCGACAAGGACGATGAGTGACATTGGTGATGGCCATGACTCCG
GTGAAGATCTTGGACGCATCCTGAGGCCGACAAGGACGAGAGTGTGGACG
GACGTGTGCGCCACGTTTTTTGGGTTCCGCTCGTGTTTCAAGAACGGGAT
CGACCGCGTGTCGAAGGAGAGAGTGTGGACGGACGTGTGCGCCACGTTTT
TTGGGTTCCGCTCGTGTTTCAAGAACGGGATCGACCGCGTGTCGAAGGAG
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