mRNA_P-fluviatile_contig7.13532.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13532.1
Unique NamemRNA_P-fluviatile_contig7.13532.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1270279..1270829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size553
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.296072-CDS-P-fluviatile_contig7:1270278..12706591622817111.296072-CDS-P-fluviatile_contig7:1270278..1270659Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1270279..1270659 +
1693571164.2038028-CDS-P-fluviatile_contig7:1270278..12706591693571164.2038028-CDS-P-fluviatile_contig7:1270278..1270659Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1270279..1270659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.3090699-UTR-P-fluviatile_contig7:1270659..12708291622817111.3090699-UTR-P-fluviatile_contig7:1270659..1270829Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1270660..1270829 +
1693571164.2119477-UTR-P-fluviatile_contig7:1270659..12708291693571164.2119477-UTR-P-fluviatile_contig7:1270659..1270829Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1270660..1270829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13532.1prot_P-fluviatile_contig7.13532.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1270279..1270659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13532.1

>prot_P-fluviatile_contig7.13532.1 ID=prot_P-fluviatile_contig7.13532.1|Name=mRNA_P-fluviatile_contig7.13532.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=127bp
QPLKDWESGIVVLVFALFLGGGGEGARAFNADALLSGIRRHSNCPLPARR
VAHGTSIGFDVVEGRKTFSAASGTFFICAEIRRVLWAGVRKSWALLELSF
FSGSPTVWVRFATLGGRKGSCSSLIA*
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mRNA from alignment at P-fluviatile_contig7:1270279..1270829+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13532.1 ID=mRNA_P-fluviatile_contig7.13532.1|Name=mRNA_P-fluviatile_contig7.13532.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=551bp|location=Sequence derived from alignment at P-fluviatile_contig7:1270279..1270829+ (Porterinema fluviatile SAG_2381)
CAGCCGCTAAAGGATTGGGAGAGTGGAATCGTTGTTCTTGTCTTTGCTTT
ATTTTTGGGGGGGGGTGGTGAGGGAGCAAGGGCTTTCAATGCTGACGCGT
TGCTGTCGGGAATTCGTCGCCATTCTAATTGCCCGCTCCCGGCTCGTCGT
GTCGCACATGGCACGAGCATCGGGTTTGATGTCGTCGAAGGACGTAAAAC
GTTTTCGGCAGCCTCGGGAACATTTTTCATCTGCGCCGAAATTCGCCGAG
TGCTTTGGGCGGGGGTCAGAAAATCGTGGGCTCTGCTGGAATTGTCTTTC
TTCTCTGGCTCCCCTACTGTCTGGGTTCGATTCGCCACCTTGGGAGGCAG
GAAAGGGTCGTGTTCGTCGTTGATTGCTTGAAGAGGTGTCATTCCAGCCG
GCCATTTCTCGATCGGTTTATTCGTTTCCTTGTCTTCCCAAAGGCCAGAA
AAGGTAACAGGCAAGCCGAGACAGGACGAATCAATTAGTCAAAAAGATAC
GTTTATGAACAGTCCTCGAAGCACGCCGTTTTCTTCAATCACCACGTGTT
T
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:1270279..1270829+

>mRNA_P-fluviatile_contig7.13532.1 ID=mRNA_P-fluviatile_contig7.13532.1|Name=mRNA_P-fluviatile_contig7.13532.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=762bp|location=Sequence derived from alignment at P-fluviatile_contig7:1270279..1270829+ (Porterinema fluviatile SAG_2381)
CAGCCGCTAAAGGATTGGGAGAGTGGAATCGTTGTTCTTGTCTTTGCTTT
ATTTTTGGGGGGGGGTGGTGAGGGAGCAAGGGCTTTCAATGCTGACGCGT
TGCTGTCGGGAATTCGTCGCCATTCTAATTGCCCGCTCCCGGCTCGTCGT
GTCGCACATGGCACGAGCATCGGGTTTGATGTCGTCGAAGGACGTAAAAC
GTTTTCGGCAGCCTCGGGAACATTTTTCATCTGCGCCGAAATTCGCCGAG
TGCTTTGGGCGGGGGTCAGAAAATCGTGGGCTCTGCTGGAATTGTCTTTC
TTCTCTGGCTCCCCTACTGTCTGGGTTCGATTCGCCACCTTGGGAGGCAG
GAAAGGGTCGTGTTCGTCGTTGATTGCTTGACAGCCGCTAAAGGATTGGG
AGAGTGGAATCGTTGTTCTTGTCTTTGCTTTATTTTTGGGGGGGGGTGGT
GAGGGAGCAAGGGCTTTCAATGCTGACGCGTTGCTGTCGGGAATTCGTCG
CCATTCTAATTGCCCGCTCCCGGCTCGTCGTGTCGCACATGGCACGAGCA
TCGGGTTTGATGTCGTCGAAGGACGTAAAACGTTTTCGGCAGCCTCGGGA
ACATTTTTCATCTGCGCCGAAATTCGCCGAGTGCTTTGGGCGGGGGTCAG
AAAATCGTGGGCTCTGCTGGAATTGTCTTTCTTCTCTGGCTCCCCTACTG
TCTGGGTTCGATTCGCCACCTTGGGAGGCAGGAAAGGGTCGTGTTCGTCG
TTGATTGCTTGA
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