mRNA_P-fluviatile_contig7.13658.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13658.1
Unique NamemRNA_P-fluviatile_contig7.13658.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13658.1 vs. uniprot
Match: D8LME5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.320e-10
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 3 
Query:  183 MTFLGAMLSLLLPGSAWRVIQRGSRTGWSQDQFLQGEEE 299
            MTFLGAMLSLLLP SAWRVIQR SRTGW QDQFLQ  EE
Sbjct:    1 MTFLGAMLSLLLPRSAWRVIQRRSRTGWRQDQFLQSAEE 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LME5_ECTSI3.320e-1087.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3134611..3140803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size673
Cds size489
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13658.1prot_P-fluviatile_contig7.13658.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3134611..3140621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817109.976752-CDS-P-fluviatile_contig7:3134610..31347471622817109.976752-CDS-P-fluviatile_contig7:3134610..3134747Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3134611..3134747 -
1693571156.1762166-CDS-P-fluviatile_contig7:3134610..31347471693571156.1762166-CDS-P-fluviatile_contig7:3134610..3134747Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3134611..3134747 -
1622817109.9892967-CDS-P-fluviatile_contig7:3138959..31391971622817109.9892967-CDS-P-fluviatile_contig7:3138959..3139197Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3138960..3139197 -
1693571156.185355-CDS-P-fluviatile_contig7:3138959..31391971693571156.185355-CDS-P-fluviatile_contig7:3138959..3139197Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3138960..3139197 -
1622817110.0010717-CDS-P-fluviatile_contig7:3140507..31406211622817110.0010717-CDS-P-fluviatile_contig7:3140507..3140621Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3140508..3140621 -
1693571156.194025-CDS-P-fluviatile_contig7:3140507..31406211693571156.194025-CDS-P-fluviatile_contig7:3140507..3140621Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3140508..3140621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817110.013221-UTR-P-fluviatile_contig7:3140621..31408031622817110.013221-UTR-P-fluviatile_contig7:3140621..3140803Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3140622..3140803 -
1693571156.204617-UTR-P-fluviatile_contig7:3140621..31408031693571156.204617-UTR-P-fluviatile_contig7:3140621..3140803Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3140622..3140803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13658.1

>prot_P-fluviatile_contig7.13658.1 ID=prot_P-fluviatile_contig7.13658.1|Name=mRNA_P-fluviatile_contig7.13658.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=163bp
MTFLGAMLSLLLPGSAWRVIQRGSRTGWSQDQFLQGEEEAAAAEYDSVRT
DCSPLGRKSGGSSPAAAGTGDDLAACFGDVEGDASGGSSTSGPSRRGSRI
GRGLRRAGNHRGNGGGPAANDNASRCWGISNSGKVFLLEPTTISAQAFVL
SRLPPRLPPLAPG
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mRNA from alignment at P-fluviatile_contig7:3134611..3140803-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13658.1 ID=mRNA_P-fluviatile_contig7.13658.1|Name=mRNA_P-fluviatile_contig7.13658.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6193bp|location=Sequence derived from alignment at P-fluviatile_contig7:3134611..3140803- (Porterinema fluviatile SAG_2381)
GTGTGCGCCATAACCCAGGCGTCAATTGCACTGCTGTGGAAATGATGGCT
TGTGCACCAAAGCATCTATTCGTGATATAGATGTTGCGCAAGAAGTCGGC
ATTGCTCCAGCTGTTGAGTGTGATTTGGCAGCGCAGGAGAGTGAACGCCA
GGGTACAAGCGGCTCGTGGTTTTTGAATAACCATGACTTTTCTGGGAGCG
ATGCTGAGCTTGCTCCTACCGGGGTCGGCGTGGAGGGTCATCCAGCGTGG
GAGCCGGACGGGCTGGAGCCAGGATCAGTTTCTTCAGGGCGAGGAGGTAA
AAATTGGGGCGTCTGACAAATGGGCCTCGCAAAATGGCGCGTCTCCCGTG
TGTTCCGACACTCGCGCGGCGCGACTTTCCTTTCACAAAGTCAAGGTTAC
CAAGGTTACCGGTTTTCCCGGTTGCCAGCATGGAGAACAATGGCAAAGGG
GGTTCGCTAAAGCGGGCGCATAAAGTGGCACAGCAGTATTGGGACCTGTT
ATGTCCGGCTTGATTGACAGTGATCGGAGCACGCCGCTTGGGTGGGTGCT
GTAGCACATTCCTTCCAACCACAAACCGGGCGAATCAATGCCCACATTCT
CTCGATGCCCCCGTGATCTCCTTACAGAAAATTTCATACATGTCAGCAGC
CAATGTTGTAGTTGTAGACAGGGGCGAACTGCGTTTACATTGCCTGTTTG
GTCGTTCTCGTTGAACGAGCGCACTCATGTTCCACGTACCAGCACCCTGG
TTGAGTGCTGCCGTTTTTGGGGTTCTGCTGGCTGTCTATCTAATCCCTTC
CGGCACCTTCGACCCTAAAAAATGAGCTGGTACGGATCTACTCCGGGGTA
TTTTGCACTGTAATGCAGTTGAATAGTCTATCCTGATACTCCGGAGTATT
TCATTTTAGCCCATGTCGTTCGTACACAACACGAGGCTACCGTAGCCCGT
TTTCCAAAGAATTTCGTATTTCTCCAACAAGCTTAAATACTCATGAAGAT
TGTCCGTTGTTCGTTGAGATGCCCGCAAGACCTTCCTGTTGACTATTCAG
TTTAGTCAAGAGCATCGGCATGTTGGTTGACACTGAGCAATCGACCATTG
AAAATCGGGTCTAGCATGCGAGGTGCGCGGCGTATCTCACGCCGTTTGTG
GCGGTATCCCCTCGTGCGTTCGTTCCTGTCACTTCTCCGTGGATCGGAAA
CATGAATGCGATCGGGTGGTTTTCCAAATCAAACGTGGCTGGGGAGGATT
GTATTTTTTGTATCGGAAGATTGAAGGGGTGTTCCTCTCTATCTCTCACG
CCGGGCCAAGCTCCTCGAGTATGTAGCTGAAGTTCGAGTCACTATTTGCC
CAACCGTGCGATGGCAGAGCAGTGATGTTGCCCTACAAAAACGCTCGATG
ACAAGACCATTTGAACCCTCGTTGTCCATTTACGTGGACGTGAGTCTGGT
GCGGATGGCTTCTACTGGTAAAAAACGTACAAAAGTCAATTCAACTAAAA
AAGTTTATTTTTCCGGCCTCATTTAGTCGCAAGGTTGACTACGTCAGGCT
GGTTCGACCTGCCTACCACCCCGTCGAAAAATGGCACCTCCGCCTGCAAA
TTGCAGGAAGCCGCCGCCGCCGAATACGACTCTGTGCGAACGGACTGCTC
ACCCCTCGGACGAAAATCGGGGGGGTCGTCTCCAGCGGCGGCCGGCACCG
GCGACGACTTGGCCGCCTGCTTCGGAGACGTCGAAGGCGACGCCAGCGGG
GGCAGCAGCACGAGCGGCCCGAGCAGAAGAGGAAGCCGCATCGGCCGCGG
GCTCCGACGAGCAGGCAATCACCGAGGCAATGGCGGTGGGCCCGAGCCGT
CGGGCGGCGGCGGTAGCGGCGGCGGTAACGGCGGCGAATCTCGATCTTCC
GCCGATGTGGGACGGCGAGGACGGAGTTCAGGAGCGGCAGAGGCTGGGGG
GGAGACTACTCGGACTGTGGCCAGACGAGGTGGAATGATTGAGTGCAACG
CATGTTGTTTTTTTGTCGTCGCCTTCACAGAATAAACCTTGCCGATCACC
GCCAGTAACTTCAAGTGTCCGTACTCTGTTCTACGGCATTGACTCTGGGG
TCACAGGCTTCAAGAAATACCTCGAAGGATGTACAAGAAAATGACAAAAA
TATAGGTGGATCCCAGAGAATCGCCCGAAGCGAACAAGACAAGTAAAAAA
CTAGGCAACCCACAACCTCTCGAGCAGAATGCGCGCGTTGTTTGCCTTGC
GCGCGACTTCCATTGCGCTCTAACGGCTACAGAGAGGCCTGACCCATTCG
CACCCGCGAAGGAAGCCGTCGTCACTTCTTCGCTGCCCGCGCCGGAAGGC
CGTGATTTTTTTTTCACGTCACCCATCACCCACCCGCTCGCACAAAATCC
TTGGTAAAAATTCCACGGCTCTGCTGGTCATTCGCGCGCGTGTGATCCAC
GAATGTGCCTTTGCAAAAGGCACCGGCGGCGCCGGTGGCGGCGCCGGTGT
CATCGGAGCCGCGATGGCAGGAGGAGACGAGCCGCAGTCGTCTCTCGACC
TATCGTTGCGATGGGAGGGTTTCGTGCTCAAGGACGTGGAGCTGCGGAGG
GACTTCCTGTCCGAACTCCTTGGGCTGCCGGTGGACGTGCCGCACGCCTT
CGTGAGGAGGGCGGTGCTTCACCTGCCGTGGTACACGCTAATGCTCGGGT
GAGAGAGCCGCCACGGCTCGTTCGTCGGTCGGATCCCTACCAGGTTGACC
GCGGCACAGTTTGCTTGACTTGCGGCGCCATGGGCTCGACTTGCTTGCAG
CAACTTGCGACTTGGGGTGCAAGCAGCTTTGCGTGTGTTGCAGGATCTTG
ATTGCGGTGTTGTCGCAGGCGAAGTGCTATCCCGCTTCTGTGTTCACCTG
ACCTACCCCCTCCCTCCCCAACCCCTCGGAGTCTTGAGCCCACGTCACGA
AACCCTCCTCCGTTCCCCCGCTTCTCCTTCCCGGCAAAGCGGGCGCAGCG
AAGAATCGCCGTCCCCGCCCCGCCCTCCAACCGGCGCGGCGGCCCACTCT
GTGCAGCGGCCCACCATCTTCTCAACTCCATTTTTTTTCCTCCCTTGCCC
ACACACCCCACCTTACCTATCTCCCGCTGCTGCCGTGTTCATGGCTGTCG
TTTCCGTCCTGTGGTGTGGGAAGGTCTTTCGTGGCGAAGCTAGAAGGAGT
CACGATCGTCATTCGCGGTGATGCGGGCAAAGCCAACGCTAACTTCAATG
CTACCGCAGCAGCAACAGCAGCCGGCGACGACGACGGCACCGGTACCGCC
AACGGCAACGGCAACGGCAACGGCAACGGCGGTGCTTCTTCTTCCCCAGA
AGGCGCAGGCGGGGAGCATCACCACCCGTCGCAGCAGCAGCATGCCGATG
GCGGGAGCGAGAGCGGGAGTCAGAGCGGGCGGGCGAGGGCCTCGAGGTTG
GTCTTTTGGGGCTGAGGAGTGGGTGGCGCGTCGTGGAAAAGGTTTCGTGT
GGGATGGTGGTGGTGGTGGCGGCGGTGGCGGTGGCAGTGGTGGTGATGGT
GGCGGTGGTAGCAGAACTTCCAGCCGTCGAAGGCATTGGGTGATCGATGT
TGCAGATGCCGCTACTGTTGATGCTGCTGTCCATGCATGGCGACCGGCGG
CACCGTAATCTCCACCGCCCATGACAAGAAAAAACTCGTTGGTACCACGG
CGAAAATGGTCGGTCTTCTCGAGATTAAAATCAAAAGATTAAAATCAAGA
AACGGCCAGTGACGATTACACCCGGGTTTTGAATGGCCACTGACGCATAA
ACACAAACCGAGAATCTCTCCAACTGGCTCATCAGGAATAAGTTGGATGG
GTGCTCTTGGGTAGTAAAATTGATGTTTTTGTTCAAGTTTAAGCACGGGA
ACCGTTTGCCGTAAAACTTCGAAGTAAGAGGATTTGAAGGACAAGTTGGC
AACATCAAATCTTGAGCCTATTATCTTTTCTTGCTCATCACACAAATGTT
CGTATTTTTGGTGCCTGGGGCTGCAATGATGAACCCCCGTTCGGCCTCGC
CCCAAAACGGCAAGGTTTGGGCAAAATGACGAAGGCATTCGCAATGCCCA
TGAGTATCCCCTCCTCCCCCCCGCGGTTCCCACTCCATTGGTCCCCCTTC
CGAACAAGGCCGAGAACCGGCAGGCGGCGTCCGTTGCCCCGGTGGCTGAA
GTGGGTCCTACGGAGGCTCAAGGTCAAGCTTGCCGACGTGACCCTGCGCT
ACGAGTCCGTCGGGATGTGTCCCCTGCAGGTGAGTCGTCACTAAGTCGGT
CAGTCGGTGCAGCAGGAGTAGCAAGGGGGAGGATAGCGGGGTGATCTCCA
ACGTTGAGACGTGCGCCGAGGGTTGACGCCAAGAAAGAGAAAGCGAGAAA
AGGGGCTTGAAATCGGAAACGTGTACAATGCCAGGGGAGTATAGTGGGGA
CAAGGGAGGCGAGTGGCGTTTGCATGGTCGACTTACGTACCGGCAGCTAA
AGTCAAGGGCTCCGCATGGGTGTATCCGATGTTCCAAACGACTTTTGTCG
CGCTAAATTTGGCTTCCGCTCATAAGAAAAAAGCGAAACGCTCTCTGATG
TTAGTGTGTGAGTGAAAAAATGGCCAAGCGATTCCGTTCGACGCGCACTG
AATTTGGGCCTATGCACATGGAGAGTAGCGCCAAATTTAGGTTTTGATCG
ACGAGTCAAAACTTGTACCAATCAAGTGTTGCTATACCGGCATGAAGCCG
GGTAAGAACAATCGCAATCGCATTCAAACCCCGCTGAAAGCGAGCTGTCG
GCTGCCGTTGTCTTGCTGCACGACGCTTGTTGGTCGCCGTTTGTTTTTCT
CAATCTCTCTTTCTCTCGCTCTCTCTCGGTCTCTCTCGCTCTCTCTCTTG
TTCTTCTTTATGCGGCTTGATCGAATACGGAATGGACGCACACAGGGGGC
GGCACCGGCCGCGGTCGAAGTCACCCTGGGAAGCCTGGAGGTACAGCCGG
TCTCCTTGCAGGGGGCCTCCGCGTGGTTCAAGCAGCAGGTGCAGGCGCAG
CACAAGAATCCCCAACACCAGTACCGCGAGGTATGTAAGCGCTAACAGAG
CGTAGTTTTTATCATCGAATCGGCGGGATAAAGCGCGGCGTTGGAGATCC
ATGTGTGAGTATACTTCATACGAGGGCTCTGCCCTTTTTTTCCTCTCTTG
CTCGTGCAGGATTCATTGTTGTCGCATTTAGATTTTGCGCGATTAAATTT
TACCTGTATTAGTTTTTTCGTTGGGAGGGGAGTCGGCTGCAGGAGTTGGC
GCGTGTTCGAAGCAAGTTCGTGTTTTCTTTTTGGGTCAAGTCGCGCAGAT
GCCTTTTCTTGTTGGGACGCCACAGTGCTCGATCCAGCTCGCTCCTATGG
GCCATTGTATTTGGTTCAACTCGCACCTCCTCGCTTGCGTTGGGGTTGGT
GATAACCAGCGACGACAGCTGTTTCGTGTGTGTTTAGGGTTTGCCGAAAG
CAGCGGTATTGCTTTGATATTTCTACCATTTTCCATGGTCTAGCCTTTGC
ACCTGACGTCGTCACGAAACACAGAGCCACCAGGACCCTGTCCCCTCCAT
CTGACTGGTGGCAGCTTGGGATGTCGCGAACATATATTATAATTGTTTTG
AGAGCAACAGCCAAGGGGTAGCCGAGCGCCCCGTGTACCATTCACAATGT
GAACACCCTCCCTGGATATCTGAAATCCCACGGAGGCCCAAGTCTGTCGT
CACTGGCGACTACCTTTGACCACAGCCTACAATGTGCAGCTCTGTTGCTA
ATTTATTCAAGGTGATAGGGAAATGGGGGGAAGTTGAGGCAAACGAGAGG
AAGCGGCGGCCGACCGGCCCCACCTTCCTCTCCCGCCCGTTGGACTACTC
TCGAGCAATATCCTCTTCCTCCCCTCCTCTCCACTCCCCGCCCTCAACGC
AAGCAGGAGCTCCTCATTCGTGGCCTGGCTGTGAGTGTCGAGCCTCTCGT
CGACTCTCCCCCTTCCCCGCCGACGGCCGCTGATACGGCCGCCGCCGCTG
CCGCCGCCGCCAACGATAACGCCTCCCGCTGCTGGGGCATCAGCAACAGC
GGCAAGGTCTTCCTTCTGGAGCCCACCACCATCTCCGCGCAGGCGTTCGT
CTTGTCGAGGCTGCCGCCGCGCCTGCCGCCGTTGGCTCCCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:3134611..3140803-

>mRNA_P-fluviatile_contig7.13658.1 ID=mRNA_P-fluviatile_contig7.13658.1|Name=mRNA_P-fluviatile_contig7.13658.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=978bp|location=Sequence derived from alignment at P-fluviatile_contig7:3134611..3140803- (Porterinema fluviatile SAG_2381)
ATGACTTTTCTGGGAGCGATGCTGAGCTTGCTCCTACCGGGGTCGGCGTG
GAGGGTCATCCAGCGTGGGAGCCGGACGGGCTGGAGCCAGGATCAGTTTC
TTCAGGGCGAGGAGATGACTTTTCTGGGAGCGATGCTGAGCTTGCTCCTA
CCGGGGTCGGCGTGGAGGGTCATCCAGCGTGGGAGCCGGACGGGCTGGAG
CCAGGATCAGTTTCTTCAGGGCGAGGAGGAAGCCGCCGCCGCCGAATACG
ACTCTGTGCGAACGGACTGCTCACCCCTCGGACGAAAATCGGGGGGGTCG
TCTCCAGCGGCGGCCGGCACCGGCGACGACTTGGCCGCCTGCTTCGGAGA
CGTCGAAGGCGACGCCAGCGGGGGCAGCAGCACGAGCGGCCCGAGCAGAA
GAGGAAGCCGCATCGGCCGCGGGCTCCGACGAGCAGGCAATCACCGAGGC
AATGGCGGTGGGCCCGGAAGCCGCCGCCGCCGAATACGACTCTGTGCGAA
CGGACTGCTCACCCCTCGGACGAAAATCGGGGGGGTCGTCTCCAGCGGCG
GCCGGCACCGGCGACGACTTGGCCGCCTGCTTCGGAGACGTCGAAGGCGA
CGCCAGCGGGGGCAGCAGCACGAGCGGCCCGAGCAGAAGAGGAAGCCGCA
TCGGCCGCGGGCTCCGACGAGCAGGCAATCACCGAGGCAATGGCGGTGGG
CCCGCCGCCAACGATAACGCCTCCCGCTGCTGGGGCATCAGCAACAGCGG
CAAGGTCTTCCTTCTGGAGCCCACCACCATCTCCGCGCAGGCGTTCGTCT
TGTCGAGGCTGCCGCCGCGCCTGCCGCCGTTGGCTCCCGGGCCGCCAACG
ATAACGCCTCCCGCTGCTGGGGCATCAGCAACAGCGGCAAGGTCTTCCTT
CTGGAGCCCACCACCATCTCCGCGCAGGCGTTCGTCTTGTCGAGGCTGCC
GCCGCGCCTGCCGCCGTTGGCTCCCGGG
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