prot_P-fluviatile_contig68.13370.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig68.13370.1
Unique Nameprot_P-fluviatile_contig68.13370.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length415
Homology
BLAST of mRNA_P-fluviatile_contig68.13370.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 2.510e-77
Identity = 134/211 (63.51%), Postives = 158/211 (74.88%), Query Frame = 0
Query:  131 SQVVMQAGISVRADLTNVFDSYGVRGTQEVDVGQLAGQHLDVMVGARSLQALTASLLRRRLPKGQVRTCNWETNLTDEQIKYAGLDAHAGVLLFYHVHQRMDPIFAEPWPDVDSLPVDTCLRLYRSINTRCVAEGSLVDYGER-TWGDTRLVVGRREGRATSMVVRLTKKYIPGALTLHPREDGVEPQALDQLELGTLVLWDAVNSRLPKE 340
            +  +  AG+SVR DLT++F+SYGV GT+ VD+GQLAG HL V  GARSLQALTA LL RRL K  VRT NWET LT +Q KYAGLD++AGVLLFY +  RMDPI  E  PDV SLP +T LRLY S NTRCVAEG++ +Y +  TWG T L +G   G AT MVVRLT K++PGA  LHP E G + QALD+LELG LVLWDA+NSRLP +
Sbjct:  175 NDTIQLAGVSVRGDLTHLFNSYGVHGTKPVDIGQLAGVHLHVKNGARSLQALTAELLHRRLAKDAVRTSNWETTLTKDQEKYAGLDSYAGVLLFYRIWARMDPILTECRPDVLSLPANTHLRLYTSTNTRCVAEGTVEEYSQDGTWGSTGLTIGHVTGGATRMVVRLTVKHVPGAFVLHPGEGGGQVQALDELELGALVLWDAINSRLPTD 385          
BLAST of mRNA_P-fluviatile_contig68.13370.1 vs. uniprot
Match: A0A6H5KSD7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD7_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 6.730e-68
Identity = 113/154 (73.38%), Postives = 129/154 (83.77%), Query Frame = 0
Query:  181 ALTASLLRRRLPKGQVRTCNWETNLTDEQIKYAGLDAHAGVLLFYHVHQRMDPIFAEPWPDVDSLPVDTCLRLYRSINTRCVAEGSLVDYGERTWGDTRLVVGRREGRATSMVVRLTKKYIPGALTLHPREDGVEPQALDQLELGTLVLWDAVN 334
            ALTA LLRRRLPKGQVRT NWET+LT EQI YAGLD++AGVLL+YHV+ RMDP++ EP PDV SLP DT LRLY   NTRCV EG+L  YGE+TWG+T L +GRREG  T MVVRLTKKYIPGAL L+P  DG EPQAL++LELGTL+LWDAV+
Sbjct:  422 ALTAGLLRRRLPKGQVRTSNWETSLTKEQITYAGLDSYAGVLLYYHVYSRMDPVYTEPRPDVLSLPADTTLRLYTVTNTRCVGEGTLAGYGEQTWGNTGLAIGRREGGTTRMVVRLTKKYIPGALALYPCHDGGEPQALEELELGTLMLWDAVH 575          
BLAST of mRNA_P-fluviatile_contig68.13370.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.450e-19
Identity = 84/252 (33.33%), Postives = 126/252 (50.00%), Query Frame = 0
Query:  107 KITKGIRVMNAKVFHGVHTVLNEWSQVVM---------QAGISVRADLTNVFDSYGVRGTQEVDVGQLAGQHLDVMVGARSLQALTASLLRRRLPKGQ-VRTCNW-ETNLTDEQIKYAGLDAHAGVLLFYHVHQRMDPIFAEPWPDVDSLPVDTCLRLYRSINTRCVAEGSLVDYGERTWGDTRL-VVGRREGR--ATSMVVRLTKKYIPGALTLHPREDGVEPQ---ALDQL--ELGTLVLWDAVNSRLPK 339
            ++  G RV+   V HG  +V  E    ++         + G+ ++ D T +   YGV     VD+  LA +    +   R L  L   LL ++LPK   VR   W + +L+D+Q +YA LDA+A +LL   + +  D IF     D + L V   +RLY      CV EG +V++ + TWG T   +V RR  R  A    VRL + ++P A TL+P  D  +P+   A  QL   + +++LWDA  SRL K
Sbjct:  276 QLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFR----DAEELHVGDRVRLYTRAGNDCVGEGCIVEHTDETWGTTGFYLVPRRATRRFARRWAVRLDRVHVPRAKTLYP--DATDPRGTPATAQLASRVDSVILWDA--SRLRK 519          
BLAST of mRNA_P-fluviatile_contig68.13370.1 vs. uniprot
Match: A0A835WLI0_9CHLO (3'-5' exonuclease domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WLI0_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 2.220e-5
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 0
Query:  134 VMQAGISVRADLTNVFDSYGVRGTQEVDVGQLAGQHL--DVMVGARSLQALTASLLRRRLPKGQVRTCNWETNLTDE-QIKYAGLDAHAGVLLFYHVHQ 229
            V++AG+ ++ D+  +   +GVR    VDV +L  Q L  +V+ G  SLQAL ASLLRRRL KG  R+ +W     DE Q+ YA  DA     L   +H+
Sbjct:  363 VVKAGVGIQEDVKRLERDFGVRVRGAVDV-RLVAQRLAPEVLAGGGSLQALAASLLRRRLDKGPQRS-DWGAGRLDERQVVYAAHDAWLSRELLMELHR 459          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig68.13370.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0J2_ECTSI2.510e-7763.513'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KSD7_9PHAE6.730e-6873.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JET4_9PHAE5.450e-1933.333'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A835WLI0_9CHLO2.220e-541.413'-5' exonuclease domain-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 117..233
e-value: 1.4E-15
score: 58.9
NoneNo IPR availablePANTHERPTHR13620:SF45WERNER SYNDROME-LIKE EXONUCLEASEcoord: 122..230
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 122..230
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 134..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig68contigP-fluviatile_contig68:664581..667302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig68.13370.1mRNA_P-fluviatile_contig68.13370.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig68 663081..670309 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig68.13370.1 ID=prot_P-fluviatile_contig68.13370.1|Name=mRNA_P-fluviatile_contig68.13370.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=415bp
MGLKTLADHVQDNHLRHFINVQLRYYTRMDRRRRHGQPSAVPEENELMRN
PPRFSRFDDRAGYNGRAPSAAVLQAVFLAVMEGMEPWYHRQQQLVDGRNL
GLDDSHKITKGIRVMNAKVFHGVHTVLNEWSQVVMQAGISVRADLTNVFD
SYGVRGTQEVDVGQLAGQHLDVMVGARSLQALTASLLRRRLPKGQVRTCN
WETNLTDEQIKYAGLDAHAGVLLFYHVHQRMDPIFAEPWPDVDSLPVDTC
LRLYRSINTRCVAEGSLVDYGERTWGDTRLVVGRREGRATSMVVRLTKKY
IPGALTLHPREDGVEPQALDQLELGTLVLWDAVNSRLPKELPTVRPAEAE
RQPDSGAAATDGASALPTHFKARGRRGEGDFVCERGDFGCWWCHRGQFHR
RGTQAPGQAKLVPH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf