mRNA_P-fluviatile_contig12.1489.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1489.1
Unique NamemRNA_P-fluviatile_contig12.1489.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1489.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.460e-19
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   49 EDLGRILRPTRTRVWTDVCATFFGFRSCFKNGIDRVSKE 165
            EDLGR+LRPTRTRVWTDVCATFFGFRSCFKNGIDRVSKE
Sbjct:  431 EDLGRVLRPTRTRVWTDVCATFFGFRSCFKNGIDRVSKE 469
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE6.460e-1997.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2301183..2301534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size150
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1489.1prot_P-fluviatile_contig12.1489.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2301183..2301519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.8359897-CDS-P-fluviatile_contig12:2301182..23012631622815486.8359897-CDS-P-fluviatile_contig12:2301182..2301263Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2301183..2301263 -
1693562045.4132884-CDS-P-fluviatile_contig12:2301182..23012631693562045.4132884-CDS-P-fluviatile_contig12:2301182..2301263Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2301183..2301263 -
1622815486.8552582-CDS-P-fluviatile_contig12:2301450..23015191622815486.8552582-CDS-P-fluviatile_contig12:2301450..2301519Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2301451..2301519 -
1693562045.4304683-CDS-P-fluviatile_contig12:2301450..23015191693562045.4304683-CDS-P-fluviatile_contig12:2301450..2301519Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2301451..2301519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.8697734-UTR-P-fluviatile_contig12:2301519..23015341622815486.8697734-UTR-P-fluviatile_contig12:2301519..2301534Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2301520..2301534 -
1693562045.4411004-UTR-P-fluviatile_contig12:2301519..23015341693562045.4411004-UTR-P-fluviatile_contig12:2301519..2301534Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 2301520..2301534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1489.1

>prot_P-fluviatile_contig12.1489.1 ID=prot_P-fluviatile_contig12.1489.1|Name=mRNA_P-fluviatile_contig12.1489.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=50bp
MSDIGDGHDSGEDLGRILRPTRTRVWTDVCATFFGFRSCFKNGIDRVSKE
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mRNA from alignment at P-fluviatile_contig12:2301183..2301534-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1489.1 ID=mRNA_P-fluviatile_contig12.1489.1|Name=mRNA_P-fluviatile_contig12.1489.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=352bp|location=Sequence derived from alignment at P-fluviatile_contig12:2301183..2301534- (Porterinema fluviatile SAG_2381)
GGCGATGCGGGTGGAATGAGTGACATTGGTGATGGCCATGACTCCGGTGA
AGATCTTGGACGCATCCTGAGGCCGACAAGGACGGTACGTCATGGTGTTG
TTTTCGCGTCCATAAGAGTTCCCCCCAAGTTCCAAAGTTAGCGCTTGGCG
TAGACACATTATTTAGCACTCGTTGCCAGACATTCCCGTGGTTTGTCTAC
TCCTTGTCGTACCCTCATTTTGTCACACGTTTCCATCCTGGTGTTCGAAA
TTTTCCTTGGTTTATTTTCAGAGAGTGTGGACGGACGTGTGCGCCACGTT
TTTTGGGTTCCGCTCGTGTTTCAAGAACGGGATCGACCGCGTGTCGAAGG
AG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:2301183..2301534-

>mRNA_P-fluviatile_contig12.1489.1 ID=mRNA_P-fluviatile_contig12.1489.1|Name=mRNA_P-fluviatile_contig12.1489.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=300bp|location=Sequence derived from alignment at P-fluviatile_contig12:2301183..2301534- (Porterinema fluviatile SAG_2381)
ATGAGTGACATTGGTGATGGCCATGACTCCGGTGAAGATCTTGGACGCAT
CCTGAGGCCGACAAGGACGATGAGTGACATTGGTGATGGCCATGACTCCG
GTGAAGATCTTGGACGCATCCTGAGGCCGACAAGGACGAGAGTGTGGACG
GACGTGTGCGCCACGTTTTTTGGGTTCCGCTCGTGTTTCAAGAACGGGAT
CGACCGCGTGTCGAAGGAGAGAGTGTGGACGGACGTGTGCGCCACGTTTT
TTGGGTTCCGCTCGTGTTTCAAGAACGGGATCGACCGCGTGTCGAAGGAG
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