mRNA_P-fluviatile_contig67.13287.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig67.13287.1
Unique NamemRNA_P-fluviatile_contig67.13287.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig67.13287.1 vs. uniprot
Match: A0A6H5L6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y9_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 1.400e-112
Identity = 217/383 (56.66%), Postives = 255/383 (66.58%), Query Frame = 2 
Query:  206 LQADGLSPRGSKG-HRRTRSATNKEDLCGGLGGGSKTKT-SITPVPSAQCGRFFND--------LPARPAAPSTLPRSSLSSTPSSASKGHPRQQQQQQLTKHAPTVRLAAMMAVALVVLLGTRAAVASPRSARSFLRAVEKAPEVSE-RCAGRLEQRRGLGV--HHEQCAAVLPASVV--------ESG--SPSWLVSVHVDRAPSSVQPLKRLRGAPAVRRSLPHQYYVRAMEAALHSIAVAEPGASVDVAVFSEGQWGGIVDEMGMPVDWHVPTDTCDDLGLHCTQNVVLLNE---PKSSVADYLECIATSDVFVGSEGKLSRAAAVLSNHVKVLTDRWETDEDEMMVALNPATTIAGMPAPQRKLLKTLVSEYHECSSA 1276
            +  +GLSPR +KG HRR+RSATNKE++    G    + T S TP PSA  GRFF+D         PARPA PSTLP    +S+PS + KGHP+QQ+     K    +                                     E  + RCA R+E+RRGLGV    EQCA VLP S +        E G  S SWLVSVHVDRAPSSV   KRLRGA  + RSLPHQYYVRAMEA+LHSIAVAEPGA VDVA+FSEGQWGG+VDEMG+P+ W V  +TCDDLGLHCTQ+VVLLNE   P+SS +  L+CIA SD+F+ SE K SRA AVLS+HVKVLTDRWE DE+EMMVALNPATTIAGMP  QR+LL+TLV++YHECSS+
Sbjct:    2 MTPNGLSPRVTKGQHRRSRSATNKEEIFSASGXXXXSNTKSATPGPSASHGRFFHDPAAAGAAVAPARPA-PSTLPSDFAASSPSPSCKGHPKQQK-----KSXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAQQNRCAERIERRRGLGVPPDREQCAGVLPDSFMMQHGGGGAEDGRDSESWLVSVHVDRAPSSVDLSKRLRGAVPLHRSLPHQYYVRAMEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCTQHVVLLNERTAPESSQS--LDCIAASDLFIASESKFSRAGAVLSDHVKVLTDRWEMDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECSSS 376
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BLAST of mRNA_P-fluviatile_contig67.13287.1 vs. uniprot
Match: D7FHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD0_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 1.730e-97
Identity = 165/234 (70.51%), Postives = 189/234 (80.77%), Query Frame = 2 
Query:  620 RCAGRLEQRRGLGV--HHEQCAAVLPASVV--------ESG--SPSWLVSVHVDRAPSSVQPLKRLRGAPAVRRSLPHQYYVRAMEAALHSIAVAEPGASVDVAVFSEGQWGGIVDEMGMPVDWHVPTDTCDDLGLHCTQNVVLLNE---PKSSVADYLECIATSDVFVGSEGKLSRAAAVLSNHVKVLTDRWETDEDEMMVALNPATTIAGMPAPQRKLLKTLVSEYHECSSA 1276
            RCA R+E+RRGLGV    EQCA VLP S +        E G  S SWLVSVHVDRAPSSV   KRLRGA  + RSLPHQYYVRAMEA+LHSIAVAEPGA VDVA+FSEGQWGG+VDEMG+P+ W V  +TCDDLGLHC+Q+VVLLNE   P+SS +  LECIA SD+F+ SE K SRA AVLS+HVKVLTDRWE DE+EMMVALNPATTIAGMP  QR+LL+TLV++YHECS++
Sbjct:   40 RCAERIERRRGLGVPPDREQCAGVLPDSFMMQHGGGGGEDGRDSESWLVSVHVDRAPSSVDLSKRLRGAAPLHRSLPHQYYVRAMEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCSQHVVLLNERTAPESSQS--LECIAASDLFIASESKFSRAGAVLSDHVKVLTDRWEMDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECSAS 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig67.13287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Y9_9PHAE1.400e-11256.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD0_ECTSI1.730e-9770.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig67contigP-fluviatile_contig67:549667..552870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003940.1
Exons4
Model size1863
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig67.13287.1prot_P-fluviatile_contig67.13287.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig67 549863..552295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817084.8706355-UTR-P-fluviatile_contig67:549666..5498621622817084.8706355-UTR-P-fluviatile_contig67:549666..549862Porterinema fluviatile SAG_2381UTRP-fluviatile_contig67 549667..549862 +
1693571060.3103223-UTR-P-fluviatile_contig67:549666..5498621693571060.3103223-UTR-P-fluviatile_contig67:549666..549862Porterinema fluviatile SAG_2381UTRP-fluviatile_contig67 549667..549862 +
1622817084.9314153-UTR-P-fluviatile_contig67:552295..5528701622817084.9314153-UTR-P-fluviatile_contig67:552295..552870Porterinema fluviatile SAG_2381UTRP-fluviatile_contig67 552296..552870 +
1693571060.3796663-UTR-P-fluviatile_contig67:552295..5528701693571060.3796663-UTR-P-fluviatile_contig67:552295..552870Porterinema fluviatile SAG_2381UTRP-fluviatile_contig67 552296..552870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817084.8817484-CDS-P-fluviatile_contig67:549862..5504701622817084.8817484-CDS-P-fluviatile_contig67:549862..550470Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 549863..550470 +
1693571060.3236666-CDS-P-fluviatile_contig67:549862..5504701693571060.3236666-CDS-P-fluviatile_contig67:549862..550470Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 549863..550470 +
1622817084.8933067-CDS-P-fluviatile_contig67:551228..5514271622817084.8933067-CDS-P-fluviatile_contig67:551228..551427Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 551229..551427 +
1693571060.3418348-CDS-P-fluviatile_contig67:551228..5514271693571060.3418348-CDS-P-fluviatile_contig67:551228..551427Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 551229..551427 +
1622817084.9054217-CDS-P-fluviatile_contig67:551670..5518021622817084.9054217-CDS-P-fluviatile_contig67:551670..551802Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 551671..551802 +
1693571060.3556912-CDS-P-fluviatile_contig67:551670..5518021693571060.3556912-CDS-P-fluviatile_contig67:551670..551802Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 551671..551802 +
1622817084.9184449-CDS-P-fluviatile_contig67:552142..5522951622817084.9184449-CDS-P-fluviatile_contig67:552142..552295Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 552143..552295 +
1693571060.3682756-CDS-P-fluviatile_contig67:552142..5522951693571060.3682756-CDS-P-fluviatile_contig67:552142..552295Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 552143..552295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig67.13287.1

>prot_P-fluviatile_contig67.13287.1 ID=prot_P-fluviatile_contig67.13287.1|Name=mRNA_P-fluviatile_contig67.13287.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=364bp
MNQLQADGLSPRGSKGHRRTRSATNKEDLCGGLGGGSKTKTSITPVPSAQ
CGRFFNDLPARPAAPSTLPRSSLSSTPSSASKGHPRQQQQQQLTKHAPTV
RLAAMMAVALVVLLGTRAAVASPRSARSFLRAVEKAPEVSERCAGRLEQR
RGLGVHHEQCAAVLPASVVESGSPSWLVSVHVDRAPSSVQPLKRLRGAPA
VRRSLPHQYYVRAMEAALHSIAVAEPGASVDVAVFSEGQWGGIVDEMGMP
VDWHVPTDTCDDLGLHCTQNVVLLNEPKSSVADYLECIATSDVFVGSEGK
LSRAAAVLSNHVKVLTDRWETDEDEMMVALNPATTIAGMPAPQRKLLKTL
VSEYHECSSAFKA*
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mRNA from alignment at P-fluviatile_contig67:549667..552870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig67.13287.1 ID=mRNA_P-fluviatile_contig67.13287.1|Name=mRNA_P-fluviatile_contig67.13287.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3204bp|location=Sequence derived from alignment at P-fluviatile_contig67:549667..552870+ (Porterinema fluviatile SAG_2381)
TTCGCTCTCGCGTGCTGCGTGCTCACAACTGCACTCACACTCCAGCACCA
CATCAACGACATCCTGGAAGACTTTTTCGCGTCCTCTCGTCTCAATCCAA
GGCAAGCCTTTCTAACGCACAAGCTGCAGCGCGAGGAAGCACACGTGACA
AACGTCAACTTGACCTTTGTCTCTGACACGCGCACCACGACAGATCATGA
ATCAGCTCCAAGCAGACGGCCTCTCGCCCCGGGGTTCCAAAGGCCACCGC
CGCACTCGCTCGGCGACCAACAAGGAGGATCTATGCGGCGGCCTCGGGGG
CGGCAGCAAAACAAAGACAAGTATCACGCCGGTCCCGTCGGCTCAGTGCG
GCCGCTTCTTCAACGACCTCCCTGCTAGACCAGCGGCCCCAAGCACCCTT
CCAAGATCTTCTCTTTCTTCTACGCCGTCGTCGGCTTCCAAGGGCCACCC
TAGGCAGCAACAGCAACAGCAGCTGACGAAGCATGCGCCCACCGTCCGCC
TTGCAGCCATGATGGCCGTCGCCCTGGTGGTTCTCCTGGGCACCCGCGCC
GCGGTCGCTAGCCCACGCTCGGCAAGGTCGTTCCTCAGAGCTGTAGAAAA
GGCCCCAGAGGTTTCCGAGAGGTGCGCTGGACGGCTGGAGCAACGGCGAG
GCTTGGGCGTCCACCACGAGCAGTGCGCTGCCGTGCTGCCGGCGTCCGTC
GTGGAGAGCGGATCACCGTCGTGGCTCGTGTCTGTTCACGTGGACAGGGC
GCCATCTTCTGTGCAGCCATTGAAGCGATTGAGAGGCGCGCCTGCTGTTC
GGCGGTGAGAGAGCAACGAAATTCGCGTGTATTTTTTCAACTTGTAGGGT
AGTCTAGACATGTTGTGTTGTTTGTATGGGTAAACACTGTTCGTGGAGTA
ACCCTGCTCTTTGCTTCACAGCACACTCAGTTTTAGGTTTGCTTGCGGTA
CCCGCCCTCTGCTGGGAATACCCCAACAATGTAGTTTGTTGGGCCGAAAA
TCAAACACACTCCTGACAACCATCCTCGTAGACCTTGTTGTCAACCTCGC
AGGCCTCCTTTTTGGGGGGGCGAAACGAAAGCGACATGTGCAGGGCCTCT
CATGCCTAGCTTGATGATGTTTATGGGTATCACGCAGCCGTAGCCACCGC
CAGTCCGCCAACTTTTCCTACTGAAATGCGATTCAGAAAACGACGCTTGG
AGCTGAAGTTCATATCTCGGGATAAAGCAAGTCCGGTCAAGTGCTTACGA
CGAATCCGGGTTGAGTGCAAAATCGTCGGTTTATCAACGTGGATGAAGTT
GAAGTTTTGTGTTTGATTACGTCTCGTTTTGTGGGGGAGTGTGAGGGACA
TTCCCGAGGCGTGGGAGAACGTACGGACAACATTTACGCCATTTCCGACG
CTACAGCCGATGGCCATTGGGCAGTTTTGCTCCACGGAGCGGGCGCGAGC
CGATCCTCGGAATGCGCGCCGGCTCTACTGCTCTCGTGACGACTCTGAAA
TTCTCAACCTTACGTTTCAAAATGCTGCCTCCTACCCCCTCCCCCCCCCC
CGTGAATGACAGGAGCCTGCCCCACCAGTACTACGTCCGCGCGATGGAGG
CAGCACTCCACAGTATCGCGGTGGCGGAACCTGGAGCCAGCGTGGACGTG
GCCGTATTCAGCGAGGGCCAGTGGGGGGGCATCGTGGACGAGATGGGGAT
GCCGGTGGACTGGCACGTGCCCACCGACACCTGCGACGATCTCGGCTTGC
ACTGTACCCAGGTGTGCTACTACGAGCAGCTTCACATGGTTTCACAAGAT
GCCTCTTGATTGTCGTACTACCCTACACCCTCAAATAAACATGATTATGC
CGCCTCGTTCGTGCTTCTCGCCAAGCTTTGGCAAGCGCTGATGGACTGGT
CGATTTTTGTCTTGTTGAACTATTTGCGCCAATGACCAATGACATGTATA
CATGCCTTTCCCCCTGGGATTTCCCTTTTCCCCCCTTGCCCCTCCTCTCC
CCAGAACGTGGTCCTGCTGAACGAGCCCAAATCCTCGGTGGCGGATTACC
TGGAGTGTATCGCCACCTCAGATGTGTTCGTGGGCAGCGAGGGCAAGTTG
TCTAGAGCCGCTGCCGTGCTTTCCAACCACGTCAAGGTGAGAGCACCTGA
TCTCATGAATAAGTTTGCCGCACACACGCACGTCATCGATTTGTACCGTT
TTCACAAAGCTACGGAGCTAAGGTCGGCTTGTGGTTGTGCGATCGTGTCT
TCAGAAAGCTTTGGGTCGCTCTCGTTCCTCAATTGGTACGTTCCACGTTG
AATGCAACAACATGCTGTCCTCACGAGTTTCAGCGTTCTCAAAATTCTCC
AGATGCAAGCGCAATAGCAAAATGGTGGAGGGACACAAGGAACCATGAGC
TAGCTAGCTGTAACTGCAACCTTTTAGGTCGATTGACTTGAAGCTCTCTC
CCCTTACTCCTCGCTTCTTCGACCAGGTGCTGACGGACCGATGGGAGACG
GATGAAGATGAGATGATGGTTGCTCTCAACCCTGCTACCACAATCGCAGG
GATGCCGGCACCTCAGCGGAAGCTGCTCAAGACCCTCGTGTCGGAATATC
ACGAATGCAGCAGCGCCTTCAAAGCTTGAGGGCGAGCTGAAGTGAAGGAC
GCGGTTCCTGTATGGCACGCATTAAGACGTCCGCCGGAGCTGGATTTTCA
AGGGGGTTGTGCGAATGATTGGAAGCCACCGCGTTCGCTCTCTCCCTCTG
CTGTCCTGGTGGTGTGACGAAAGAGGCGTATCTACTCTAGTGATTGGTTT
GCGTAGCAACAGAAAGTGGAGGGGATGATCATTGAGGTCCCTACGTGGGG
TGGTGAAAAGAACATCTTGTTAACGTACGTAAATATTTCAGCATGCGTGA
GTTGTTTTCATATTGCAAGACACGTGACGAGTTCCTTGCAGTCACAAGCG
TGAGCACTGACTACTGAAGAGTCACACCCTGTCGGTGTAAGTAGCGTCTT
CACCTTGGGGGATATTGTCCGTTTCAACCACACGGGAGATGAATTTGTTT
TTCGCGCACATGCGTGAGCACCTACGCGTGCTCTGACGGCCGAAGAGACA
CGGTCAGTAAGATCGCCGTCAGTCTTTTGCAGCATGTTGCGTGCCGTTTT
TGCGGTCTCGCATATACATTTATGTGCGTCGCTTTTTTTTTAGAGTTAAG
TGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig67:549667..552870+

>mRNA_P-fluviatile_contig67.13287.1 ID=mRNA_P-fluviatile_contig67.13287.1|Name=mRNA_P-fluviatile_contig67.13287.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2184bp|location=Sequence derived from alignment at P-fluviatile_contig67:549667..552870+ (Porterinema fluviatile SAG_2381)
ATGAATCAGCTCCAAGCAGACGGCCTCTCGCCCCGGGGTTCCAAAGGCCA
CCGCCGCACTCGCTCGGCGACCAACAAGGAGGATCTATGCGGCGGCCTCG
GGGGCGGCAGCAAAACAAAGACAAGTATCACGCCGGTCCCGTCGGCTCAG
TGCGGCCGCTTCTTCAACGACCTCCCTGCTAGACCAGCGGCCCCAAGCAC
CCTTCCAAGATCTTCTCTTTCTTCTACGCCGTCGTCGGCTTCCAAGGGCC
ACCCTAGGCAGCAACAGCAACAGCAGCTGACGAAGCATGCGCCCACCGTC
CGCCTTGCAGCCATGATGGCCGTCGCCCTGGTGGTTCTCCTGGGCACCCG
CGCCGCGGTCGCTAGCCCACGCTCGGCAAGGTCGTTCCTCAGAGCTGTAG
AAAAGGCCCCAGAGGTTTCCGAGAGGTGCGCTGGACGGCTGGAGCAACGG
CGAGGCTTGGGCGTCCACCACGAGCAGTGCGCTGCCGTGCTGCCGGCGTC
CGTCGTGGAGAGCGGATCACCGTCGTGGCTCGTGTCTGTTCACGTGGACA
GGGCGCCATCTTCTGTGCAGCCATTGAAGCGATTGAGAGGCGCGCCTGCT
GTTCGGCGATGAATCAGCTCCAAGCAGACGGCCTCTCGCCCCGGGGTTCC
AAAGGCCACCGCCGCACTCGCTCGGCGACCAACAAGGAGGATCTATGCGG
CGGCCTCGGGGGCGGCAGCAAAACAAAGACAAGTATCACGCCGGTCCCGT
CGGCTCAGTGCGGCCGCTTCTTCAACGACCTCCCTGCTAGACCAGCGGCC
CCAAGCACCCTTCCAAGATCTTCTCTTTCTTCTACGCCGTCGTCGGCTTC
CAAGGGCCACCCTAGGCAGCAACAGCAACAGCAGCTGACGAAGCATGCGC
CCACCGTCCGCCTTGCAGCCATGATGGCCGTCGCCCTGGTGGTTCTCCTG
GGCACCCGCGCCGCGGTCGCTAGCCCACGCTCGGCAAGGTCGTTCCTCAG
AGCTGTAGAAAAGGCCCCAGAGGTTTCCGAGAGGTGCGCTGGACGGCTGG
AGCAACGGCGAGGCTTGGGCGTCCACCACGAGCAGTGCGCTGCCGTGCTG
CCGGCGTCCGTCGTGGAGAGCGGATCACCGTCGTGGCTCGTGTCTGTTCA
CGTGGACAGGGCGCCATCTTCTGTGCAGCCATTGAAGCGATTGAGAGGCG
CGCCTGCTGTTCGGCGGAGCCTGCCCCACCAGTACTACGTCCGCGCGATG
GAGGCAGCACTCCACAGTATCGCGGTGGCGGAACCTGGAGCCAGCGTGGA
CGTGGCCGTATTCAGCGAGGGCCAGTGGGGGGGCATCGTGGACGAGATGG
GGATGCCGGTGGACTGGCACGTGCCCACCGACACCTGCGACGATCTCGGC
TTGCACTGTACCCAGGAGCCTGCCCCACCAGTACTACGTCCGCGCGATGG
AGGCAGCACTCCACAGTATCGCGGTGGCGGAACCTGGAGCCAGCGTGGAC
GTGGCCGTATTCAGCGAGGGCCAGTGGGGGGGCATCGTGGACGAGATGGG
GATGCCGGTGGACTGGCACGTGCCCACCGACACCTGCGACGATCTCGGCT
TGCACTGTACCCAGAACGTGGTCCTGCTGAACGAGCCCAAATCCTCGGTG
GCGGATTACCTGGAGTGTATCGCCACCTCAGATGTGTTCGTGGGCAGCGA
GGGCAAGTTGTCTAGAGCCGCTGCCGTGCTTTCCAACCACGTCAAGAACG
TGGTCCTGCTGAACGAGCCCAAATCCTCGGTGGCGGATTACCTGGAGTGT
ATCGCCACCTCAGATGTGTTCGTGGGCAGCGAGGGCAAGTTGTCTAGAGC
CGCTGCCGTGCTTTCCAACCACGTCAAGGTGCTGACGGACCGATGGGAGA
CGGATGAAGATGAGATGATGGTTGCTCTCAACCCTGCTACCACAATCGCA
GGGATGCCGGCACCTCAGCGGAAGCTGCTCAAGACCCTCGTGTCGGAATA
TCACGAATGCAGCAGCGCCTTCAAAGCTTGAGTGCTGACGGACCGATGGG
AGACGGATGAAGATGAGATGATGGTTGCTCTCAACCCTGCTACCACAATC
GCAGGGATGCCGGCACCTCAGCGGAAGCTGCTCAAGACCCTCGTGTCGGA
ATATCACGAATGCAGCAGCGCCTTCAAAGCTTGA
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