mRNA_P-fluviatile_contig12.1417.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1417.1
Unique NamemRNA_P-fluviatile_contig12.1417.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1416767..1417529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size742
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1417.1prot_P-fluviatile_contig12.1417.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1416791..1417300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.9791937-UTR-P-fluviatile_contig12:1416766..14167901622815485.9791937-UTR-P-fluviatile_contig12:1416766..1416790Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1416767..1416790 +
1693562043.2825243-UTR-P-fluviatile_contig12:1416766..14167901693562043.2825243-UTR-P-fluviatile_contig12:1416766..1416790Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1416767..1416790 +
1622815486.0154123-UTR-P-fluviatile_contig12:1417300..14175291622815486.0154123-UTR-P-fluviatile_contig12:1417300..1417529Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1417301..1417529 +
1693562043.3080466-UTR-P-fluviatile_contig12:1417300..14175291693562043.3080466-UTR-P-fluviatile_contig12:1417300..1417529Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1417301..1417529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.9923766-CDS-P-fluviatile_contig12:1416790..14170541622815485.9923766-CDS-P-fluviatile_contig12:1416790..1417054Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1416791..1417054 +
1693562043.2907474-CDS-P-fluviatile_contig12:1416790..14170541693562043.2907474-CDS-P-fluviatile_contig12:1416790..1417054Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1416791..1417054 +
1622815486.005477-CDS-P-fluviatile_contig12:1417075..14173001622815486.005477-CDS-P-fluviatile_contig12:1417075..1417300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1417076..1417300 +
1693562043.2990768-CDS-P-fluviatile_contig12:1417075..14173001693562043.2990768-CDS-P-fluviatile_contig12:1417075..1417300Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1417076..1417300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1417.1

>prot_P-fluviatile_contig12.1417.1 ID=prot_P-fluviatile_contig12.1417.1|Name=mRNA_P-fluviatile_contig12.1417.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=163bp
MAVKESRKTHRTCTEVWWALFTITQPAPHNALSRAAELVEPDLSPTPPLP
RAPISRHCLLAASPRPSTPAPACRPWSPVVTRRGLGGFLGYASYDNQGAR
TRRLSHSVQANHHYRVLVLQPRSSPMASGDEGPGGTEYVLFRFSATGPPS
RQNKYCCQKITR*
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mRNA from alignment at P-fluviatile_contig12:1416767..1417529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1417.1 ID=mRNA_P-fluviatile_contig12.1417.1|Name=mRNA_P-fluviatile_contig12.1417.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=763bp|location=Sequence derived from alignment at P-fluviatile_contig12:1416767..1417529+ (Porterinema fluviatile SAG_2381)
CGCGTGGTGCCCATAAGGCGGGGGATGGCTGTAAAGGAGAGCAGGAAAAC
ACATAGGACATGCACGGAGGTATGGTGGGCCTTATTTACTATCACACAGC
CCGCCCCACACAACGCACTCTCCCGTGCCGCAGAGTTAGTGGAGCCGGAT
CTGTCGCCTACTCCTCCGCTCCCTCGAGCTCCGATTTCCCGCCACTGTCT
GCTGGCGGCCTCTCCACGCCCGTCTACCCCGGCACCAGCTTGTAGACCGT
GGTCTCCGGTAGTCACAAGAAGGGGACTTGGGGGCTTCGTTGTAGAGAAA
GTGTTCCAGTTGGGGTATGCCTCATATGATAACCAGGGCGCTCGTACCCG
CCGGCTGTCACATTCTGTGCAAGCCAATCATCACTACCGTGTGTTAGTAC
TTCAGCCTCGCTCTAGCCCCATGGCGAGTGGGGACGAGGGTCCTGGTGGA
ACTGAATACGTCTTGTTTCGCTTTTCAGCCACAGGACCGCCTTCTCGACA
AAACAAATATTGTTGTCAGAAAATAACGAGGTAGGGGGCGCGTGAGACCT
AACCCTCATGATAACCCTAACCTCTCGAAAAAACACGGATCCCATCCTTC
ATCCCACACATATCCATACTCCATGAAAACCTGCGCCAACGTCACCGCAG
CCACGAGCCGCCGCCCACACCACAAGAGACGTACCGTTGCGCCACGGAGC
TCCAGGGAGGCGTTCACGTCGTCGACGGTGAGGCGGGACCGCTTGCCGCG
CGCGCGGAAGTTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1416767..1417529+

>mRNA_P-fluviatile_contig12.1417.1 ID=mRNA_P-fluviatile_contig12.1417.1|Name=mRNA_P-fluviatile_contig12.1417.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=978bp|location=Sequence derived from alignment at P-fluviatile_contig12:1416767..1417529+ (Porterinema fluviatile SAG_2381)
ATGGCTGTAAAGGAGAGCAGGAAAACACATAGGACATGCACGGAGGTATG
GTGGGCCTTATTTACTATCACACAGCCCGCCCCACACAACGCACTCTCCC
GTGCCGCAGAGTTAGTGGAGCCGGATCTGTCGCCTACTCCTCCGCTCCCT
CGAGCTCCGATTTCCCGCCACTGTCTGCTGGCGGCCTCTCCACGCCCGTC
TACCCCGGCACCAGCTTGTAGACCGTGGTCTCCGGTAGTCACAAGAAGGG
GACTTGGGGGCTTCATGGCTGTAAAGGAGAGCAGGAAAACACATAGGACA
TGCACGGAGGTATGGTGGGCCTTATTTACTATCACACAGCCCGCCCCACA
CAACGCACTCTCCCGTGCCGCAGAGTTAGTGGAGCCGGATCTGTCGCCTA
CTCCTCCGCTCCCTCGAGCTCCGATTTCCCGCCACTGTCTGCTGGCGGCC
TCTCCACGCCCGTCTACCCCGGCACCAGCTTGTAGACCGTGGTCTCCGGT
AGTCACAAGAAGGGGACTTGGGGGCTTCTTGGGGTATGCCTCATATGATA
ACCAGGGCGCTCGTACCCGCCGGCTGTCACATTCTGTGCAAGCCAATCAT
CACTACCGTGTGTTAGTACTTCAGCCTCGCTCTAGCCCCATGGCGAGTGG
GGACGAGGGTCCTGGTGGAACTGAATACGTCTTGTTTCGCTTTTCAGCCA
CAGGACCGCCTTCTCGACAAAACAAATATTGTTGTCAGAAAATAACGAGG
TAGTTGGGGTATGCCTCATATGATAACCAGGGCGCTCGTACCCGCCGGCT
GTCACATTCTGTGCAAGCCAATCATCACTACCGTGTGTTAGTACTTCAGC
CTCGCTCTAGCCCCATGGCGAGTGGGGACGAGGGTCCTGGTGGAACTGAA
TACGTCTTGTTTCGCTTTTCAGCCACAGGACCGCCTTCTCGACAAAACAA
ATATTGTTGTCAGAAAATAACGAGGTAG
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