mRNA_P-fluviatile_contig12.1345.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1345.1
Unique NamemRNA_P-fluviatile_contig12.1345.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:435017..436131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.7028751-CDS-P-fluviatile_contig12:435016..4353341622815485.7028751-CDS-P-fluviatile_contig12:435016..435334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 435017..435334 +
1693562042.8305018-CDS-P-fluviatile_contig12:435016..4353341693562042.8305018-CDS-P-fluviatile_contig12:435016..435334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 435017..435334 +
1622815485.7141619-CDS-P-fluviatile_contig12:436049..4361301622815485.7141619-CDS-P-fluviatile_contig12:436049..436130Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 436050..436130 +
1693562042.838821-CDS-P-fluviatile_contig12:436049..4361301693562042.838821-CDS-P-fluviatile_contig12:436049..436130Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 436050..436130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1345.1prot_P-fluviatile_contig12.1345.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 435017..436130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1345.1

>prot_P-fluviatile_contig12.1345.1 ID=prot_P-fluviatile_contig12.1345.1|Name=mRNA_P-fluviatile_contig12.1345.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=133bp
NRWICCDSTARTLARRAETLCHHPPRPLEHGIRAGRTPRWMSPAAPRDPP
SARPPEARSPACSSERVAWCPPQRIPRRPRPSREVVDDDRHKDELRGEIR
KSPAQEVATPLALHAVAEMESAPLPDLMAGADK
back to top

mRNA from alignment at P-fluviatile_contig12:435017..436131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1345.1 ID=mRNA_P-fluviatile_contig12.1345.1|Name=mRNA_P-fluviatile_contig12.1345.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1115bp|location=Sequence derived from alignment at P-fluviatile_contig12:435017..436131+ (Porterinema fluviatile SAG_2381)
AATCGTTGGATCTGCTGCGACTCGACGGCGAGAACTCTGGCAAGGCGAGC
AGAGACACTTTGCCATCACCCGCCACGGCCGTTGGAGCATGGGATTCGGG
CTGGACGAACCCCCAGGTGGATGTCCCCAGCCGCTCCAAGGGACCCACCT
TCAGCACGCCCTCCGGAAGCTCGAAGTCCCGCTTGCTCTTCGGAGAGAGT
GGCGTGGTGCCCTCCGCAGCGGATCCCGCGTCGCCCGCGGCCCTCGAGAG
AGGTCGTTGACGACGATCGACACAAGGATGAACTCCGAGGAGAAATTCGA
AAAAGTCCGGCTCAAGAGGTCCGTGTAAACGTGAGCGCGGAAACTCCCCC
GGACCTGATCCGGGGCGTGCCGAGCGCTCTCTACGCGATGGACGTGGGGG
GCAGCGAGTTAAACTCTATTGTTTTGATTCTCTTCCGCTCGAGCGTGCGA
TACATAAATGCTCGTTGAGAGCGAACGTTTTTACACGTTTTTTTGTTTTC
AGAGGATACTTTTTCGCAAACTTGAGTGCCTTCAAGGATTTCTTCTCTTG
TTTCGCGTTTTCACGATTAACTCGTGTGGTCCTTGTTTATTTTTCCTTGG
GTTGCCTCACAACCTGCATCATCGCGTGTGCTTGATATTCGAGTCGTTTT
GCATTGCATATGCAGAGCCGTAACCGCATCAAATCCTTCGTGGATGCCAC
ATTTTTCGATACCGTGAAGCGCCACCGGGCCGCGGACCGCGCCACGCTTC
AAATCGAAATCGTCAGGGGGGCCAACAGACTGTTGATCGACTTCGCCGAC
CAAGTGCGTGTGCTCACGACAGCGGTTCGTGTTTTGTGTGCGTGACATTT
CTCGTCACGAGGGGAATGACCCTACAGGCAAGTCAAATATTTGAACGCCA
ACGATACGTGTCGCTCTCCCTTCAATCGATTCCAGCACGAGCGGCGGCTC
TACGTCGCAGTGCGATTCTGCGTCGCAGAGGTGTAACAACGACTCCCCTT
CATGCCTTTGTCGCCGGAAACCGTCCGAATCAGGTTGCGACGCCGCTCGC
GCTCCACGCGGTGGCGGAGATGGAGAGCGCTCCCCTCCCGGACCTGATGG
CTGGTGCGGACAAGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:435017..436131+

>mRNA_P-fluviatile_contig12.1345.1 ID=mRNA_P-fluviatile_contig12.1345.1|Name=mRNA_P-fluviatile_contig12.1345.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=798bp|location=Sequence derived from alignment at P-fluviatile_contig12:435017..436131+ (Porterinema fluviatile SAG_2381)
AATCGTTGGATCTGCTGCGACTCGACGGCGAGAACTCTGGCAAGGCGAGC
AGAGACACTTTGCCATCACCCGCCACGGCCGTTGGAGCATGGGATTCGGG
CTGGACGAACCCCCAGGTGGATGTCCCCAGCCGCTCCAAGGGACCCACCT
TCAGCACGCCCTCCGGAAGCTCGAAGTCCCGCTTGCTCTTCGGAGAGAGT
GGCGTGGTGCCCTCCGCAGCGGATCCCGCGTCGCCCGCGGCCCTCGAGAG
AGGTCGTTGACGACGATCGACACAAGGATGAACTCCGAGGAGAAATTCGA
AAAAGTCCGGCTCAAGAGAATCGTTGGATCTGCTGCGACTCGACGGCGAG
AACTCTGGCAAGGCGAGCAGAGACACTTTGCCATCACCCGCCACGGCCGT
TGGAGCATGGGATTCGGGCTGGACGAACCCCCAGGTGGATGTCCCCAGCC
GCTCCAAGGGACCCACCTTCAGCACGCCCTCCGGAAGCTCGAAGTCCCGC
TTGCTCTTCGGAGAGAGTGGCGTGGTGCCCTCCGCAGCGGATCCCGCGTC
GCCCGCGGCCCTCGAGAGAGGTCGTTGACGACGATCGACACAAGGATGAA
CTCCGAGGAGAAATTCGAAAAAGTCCGGCTCAAGAGGTTGCGACGCCGCT
CGCGCTCCACGCGGTGGCGGAGATGGAGAGCGCTCCCCTCCCGGACCTGA
TGGCTGGTGCGGACAAGGTTGCGACGCCGCTCGCGCTCCACGCGGTGGCG
GAGATGGAGAGCGCTCCCCTCCCGGACCTGATGGCTGGTGCGGACAAG
back to top