mRNA_P-fluviatile_contig65.13169.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig65.13169.1
Unique NamemRNA_P-fluviatile_contig65.13169.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A6H5JWH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWH2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.530e-34
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QVSVFVVNLKGRPF+GGLSENRPLLYSLAA FA+TFMSASETI RLNKWLQLEPFPDD FRNAIMLVLVLDI
Sbjct: 1356 QVSVFVVNLKGRPFMGGLSENRPLLYSLAATFALTFMSASETIPRLNKWLQLEPFPDDNFRNAIMLVLVLDI 1427          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A7R9VRH3_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRH3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.110e-23
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QV+VFVVNL+GRPF+ GL+ENRPLL+SL   F +TFM ASET+  LNK+ +L PFPDDAF+N I+ +L  D+
Sbjct:    6 QVTVFVVNLQGRPFMSGLTENRPLLWSLLITFILTFMFASETVPSLNKYFELVPFPDDAFKNFILKILAADV 77          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A7S0KBY2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBY2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.790e-23
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QV+VFVVNL+GRPF+ GL+ENRPLLYSL A F +TFM ASET+  LNK++QL PFP D FRN I+++L  D+
Sbjct:  203 QVAVFVVNLQGRPFMTGLTENRPLLYSLIATFILTFMFASETVPSLNKYMQLVPFPSDDFRNFILILLAADV 274          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A7S3PCD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PCD3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.570e-22
Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QV+VFVVNL+GRPF+ GL+EN PLL+SL A F +TFM ASE++  LN++ QL PFP++ FR+ I+++L +D+
Sbjct:    8 QVTVFVVNLQGRPFMTGLTENTPLLWSLIATFILTFMFASESVPGLNRYFQLVPFPEEGFRDFILMILAIDV 79          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A836CGN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.610e-22
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 QVSVFVVNLKGRP-------------FVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QVSV+VV LKGRP             F+ GL+ENR LL+SLAA FA+ FMSASET+ RLNKWLQLEPFPD  FR  ++++L LD+
Sbjct: 1706 QVSVYVVKLKGRPCVXXXXXXXXXXXFMNGLTENRTLLWSLAATFALVFMSASETVPRLNKWLQLEPFPDSQFRAKLLIILALDL 1790          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A812UPZ1_SYMMI (Atp13a1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UPZ1_SYMMI)

HSP 1 Score: 96.3 bits (238), Expect = 8.060e-22
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QVSVFVVNLKG PF+GGL++N PLL+SLA  F  TFM ASE+I +LN++LQLEPFP  AFRN +++ L +D+
Sbjct:  275 QVSVFVVNLKGPPFMGGLAQNTPLLWSLAVTFVGTFMCASESIPQLNQFLQLEPFPSIAFRNTVLVALAIDV 346          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A7S0CEF7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CEF7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.390e-21
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QV+VFVVNL+GRPF+ GL+ENRPLL+SLAA F +TFM ASE++  LNK+ QL PFP D FR+ I+ +L  D+
Sbjct:  134 QVTVFVVNLQGRPFMNGLTENRPLLWSLAATFILTFMFASESLPGLNKYFQLVPFPSDDFRDFILKILAADV 205          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A7S2UGQ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGQ7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.430e-21
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QV+VFVVNL+GRPF+ GL+ENRPLL+SL A F +TFM ASE++  LNK+ QL PFPDDAFR+ I+ +L  D+
Sbjct: 1421 QVTVFVVNLQGRPFMTGLTENRPLLWSLLATFILTFMFASESVPGLNKYFQLVPFPDDAFRDFILKILAADV 1492          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A7S1ZNT5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZNT5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.910e-21
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QV+VFVVNL+GRPF+ GL+ENRPLL+SL A F +TFM ASE++  LNK+ QL PFPD+AFR+ I+ +L+ D+
Sbjct:  482 QVTVFVVNLQGRPFMTGLTENRPLLWSLLATFILTFMFASESVPSLNKYFQLVPFPDEAFRDFIIKILIADV 553          
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Match: A0A7S2ELI2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ELI2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.950e-21
Identity = 45/72 (62.50%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWLQLEPFPDDAFRNAIMLVLVLDI 216
            QV+VFVVNL+GRPF+ GL+ENRPLL+SL A F +TFM ASE++  LNK+ QL PFPD+AFR+ I+ +L+ D+
Sbjct: 1481 QVTVFVVNLQGRPFMTGLTENRPLLWSLLATFILTFMFASESVPSLNKYFQLVPFPDEAFRDFIIKILIADV 1552          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig65.13169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWH2_9PHAE1.530e-3493.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9VRH3_9STRA1.110e-2362.50Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A7S0KBY2_9STRA4.790e-2365.28Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S3PCD3_9STRA5.570e-2256.94Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A836CGN5_9STRA5.610e-2258.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812UPZ1_SYMMI8.060e-2263.89Atp13a1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A7S0CEF7_9STRA1.390e-2162.50Hypothetical protein (Fragment) n=2 Tax=Proboscia ... [more]
A0A7S2UGQ7_9STRA1.430e-2163.89Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1ZNT5_9STRA1.910e-2162.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2ELI2_9STRA1.950e-2162.50Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig65contigP-fluviatile_contig65:811730..812593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue4.6e-29
Seed eggNOG ortholog2880.D7FQP9
KEGG koko:K14950
KEGG TC3.A.3.10
GOsGO:0000003,GO:0001709,GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008324,GO:0009267,GO:0009555,GO:0009605,GO:0009846,GO:0009856,GO:0009888,GO:0009987,GO:0009991,GO:0010073,GO:0010152,GO:0012505,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016036,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0021700,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030154,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0042592,GO:0042594,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044706,GO:0045165,GO:0046873,GO:0048229,GO:0048507,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071496,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099131,GO:0099132
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0209@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817068.765081-CDS-P-fluviatile_contig65:811731..8118121622817068.765081-CDS-P-fluviatile_contig65:811731..811812Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 811732..811812 -
1693571020.0538907-CDS-P-fluviatile_contig65:811731..8118121693571020.0538907-CDS-P-fluviatile_contig65:811731..811812Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 811732..811812 -
1622817068.776296-CDS-P-fluviatile_contig65:812458..8125931622817068.776296-CDS-P-fluviatile_contig65:812458..812593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 812459..812593 -
1693571020.074147-CDS-P-fluviatile_contig65:812458..8125931693571020.074147-CDS-P-fluviatile_contig65:812458..812593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig65 812459..812593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig65.13169.1prot_P-fluviatile_contig65.13169.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig65 811732..812593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig65.13169.1

>prot_P-fluviatile_contig65.13169.1 ID=prot_P-fluviatile_contig65.13169.1|Name=mRNA_P-fluviatile_contig65.13169.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=72bp
QVSVFVVNLKGRPFVGGLSENRPLLYSLAANFAITFMSASETIARLNKWL
QLEPFPDDAFRNAIMLVLVLDI
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mRNA from alignment at P-fluviatile_contig65:811730..812593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig65.13169.1 ID=mRNA_P-fluviatile_contig65.13169.1|Name=mRNA_P-fluviatile_contig65.13169.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=864bp|location=Sequence derived from alignment at P-fluviatile_contig65:811730..812593- (Porterinema fluviatile SAG_2381)
CAGGTCAGCGTGTTCGTGGTGAACCTGAAGGGTAGGCCCTTCGTGGGAGG CCTTTCGGAGAACAGGCCCCTGCTGTACTCCTTGGCGGCCAACTTCGCTA TCACATTCATGAGCGCCAGCGAGACCATCGCCAGGGTGAGCTGAGCCGGC CCGTCTGGGCAACCGCAGCAGCAGTGCGCGGAATGCACGCGTCGTGTCTG CACGATTTGTCTTGCTTTGTTCTTGTGGCATGTTCGCCCCCCACCACAAA GTAGCAATGGAGGCAAGCACCGCTGTAAAACGGGGCGATCTTCACTCTTG AGGCTTGTGTCGGGTTTACGGTGCCCAAAGCCGGTGGGAAGCATTGTGTA CGCTGGTTGTGTCCGTGGGTCGGCAGTTCCGACGACAATCTCGGAAGCAA GATTAGTTACTTCGTGAGAAGCGAAGGAGATCAGCACGATGACTGTCCAT TCGTTTCGAGCCAGGAGCGGTCGGCGCAAACCTAAACCTAACCCAAACCG TACCCCTAACCATAAGGCATCGAACTAAATGACGACCTGCGGGGCGTTAC GATTTTACCGCCGCGTCTGATGCTCGGATGGCGTGAAACTTGGGGACAAG ACAAAAAAACTTGGGTTCTCAGATGGGCTGAGTGTCTAAATCTCAGGCCG AGCCAATGGTGCTGCCGGTACCGCAGTGCCGGACATTCTTGCAGCTCCAC ATCGTGTCTCAAGTCAGGTTTTCTACGCACGCTCTCTCCTTTCCTCGATT CCCTCTATCCCTCCTTACTTGTCCTCTGCAGCTCAACAAGTGGCTACAGT TGGAACCCTTCCCGGACGACGCGTTCCGCAACGCTATCATGCTGGTGCTG GTTCTGGACATCGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig65:811730..812593-

>mRNA_P-fluviatile_contig65.13169.1 ID=mRNA_P-fluviatile_contig65.13169.1|Name=mRNA_P-fluviatile_contig65.13169.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=432bp|location=Sequence derived from alignment at P-fluviatile_contig65:811730..812593- (Porterinema fluviatile SAG_2381)
CAGGTCAGCGTGTTCGTGGTGAACCTGAAGGGTAGGCCCTTCGTGGGAGG
CCTTTCGGAGAACAGGCCCCTGCTGTACTCCTTGGCGGCCAACTTCGCTA
TCACATTCATGAGCGCCAGCGAGACCATCGCCAGGCAGGTCAGCGTGTTC
GTGGTGAACCTGAAGGGTAGGCCCTTCGTGGGAGGCCTTTCGGAGAACAG
GCCCCTGCTGTACTCCTTGGCGGCCAACTTCGCTATCACATTCATGAGCG
CCAGCGAGACCATCGCCAGGCTCAACAAGTGGCTACAGTTGGAACCCTTC
CCGGACGACGCGTTCCGCAACGCTATCATGCTGGTGCTGGTTCTGGACAT
CCTCAACAAGTGGCTACAGTTGGAACCCTTCCCGGACGACGCGTTCCGCA
ACGCTATCATGCTGGTGCTGGTTCTGGACATC
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