mRNA_P-fluviatile_contig64.13100.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig64.13100.1
Unique NamemRNA_P-fluviatile_contig64.13100.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Match: A0A6H5JMQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.510e-15
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = -1 
Query:  223 AAEEGVEEGPHLAGDEEWLEQKKRLCPNANRHPPCPGLDDNGRRHPLLTCSRI 381
            AAE+G+EEGPH A  +E L+ K RLC  A+RHPP PGLD +GRRHPLLTCSR+
Sbjct:   21 AAEQGLEEGPHRAVIKERLQHKGRLCSFASRHPPYPGLDGSGRRHPLLTCSRL 73
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BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Match: A0A6H5KET0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KET0_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 8.680e-15
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = -1 
Query:  223 DAAEEGVEEGPHLAGDEEWLEQKKRLCPNANRHPPCPGLDDNGRRHPLLTCSRI 384
            DAAE+ +EEGPHLA  +E L+ K RL P A+RHPPCPGLD +GRRHPLLTCSR+
Sbjct:  437 DAAEQELEEGPHLAVAKERLQHKGRLGPFASRHPPCPGLDGSGRRHPLLTCSRL 490
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BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Match: A0A6H5KC91_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC91_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.480e-14
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:  223 DAAEEGVEEGPHLAGDEEWLEQKKRLCPNANRHPPCPGLDDNGRRHPLLTCSRI 384
            DA E+G+EEG HLA  +E L+ K RL P A+RHPPCPGLD +GRRHPLLTCSR+
Sbjct:  352 DATEQGLEEGTHLAVVKERLQHKGRLRPFASRHPPCPGLDGSGRRHPLLTCSRL 405
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BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.160e-9
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3 
Query:  233 AGAEETALPERQPAPSVSRVGRQRTPTPIVDV 328
            AGAEETALPERQPAPSVSRVGRQRTPTPIVDV
Sbjct:  629 AGAEETALPERQPAPSVSRVGRQRTPTPIVDV 660
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BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.200e-9
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3 
Query:  233 AGAEETALPERQPAPSVSRVGRQRTPTPIVDV 328
            AGAEETALPERQPAPSVSRVGRQRTPTPIVDV
Sbjct:  870 AGAEETALPERQPAPSVSRVGRQRTPTPIVDV 901
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BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Match: A0A6H5KHG4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG4_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.530e-6
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = -1 
Query:  271 VRRADKGGAAGPRRVDAAEEGVEEGPHLAGDEEWLEQKKRLCPNANRHPPCPG 429
            VR   KGG    R  DAAE+G+EEGPHLA  +E L+ K RLCP A+RH P PG
Sbjct:  411 VRLPGKGGGXXRRGGDAAEQGLEEGPHLAVVKERLQHKGRLCPFASRHLPVPG 463
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BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Match: A0A6H5JGL8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.120e-5
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = -3 
Query:  233 AGAEETALPERQPAPSVSRVGRQRTPTPIVDV 328
            A A+  ALP RQPAPS+SRVGRQRTPTP+VDV
Sbjct:  436 AAAQGAALPVRQPAPSLSRVGRQRTPTPVVDV 467
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BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Match: A0A6H5JYA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYA0_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 8.990e-5
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:  233 TALPERQPAPSVSRVGRQRTPTPIVDV 313
            T L ERQPAPSVSRVGRQRTPTP+VDV
Sbjct:  306 TTLSERQPAPSVSRVGRQRTPTPVVDV 332
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig64.13100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JMQ4_9PHAE1.510e-1567.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KET0_9PHAE8.680e-1570.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KC91_9PHAE3.480e-1468.52DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JV04_9PHAE1.160e-9100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ12_9PHAE1.200e-9100.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHG4_9PHAE2.530e-658.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JGL8_9PHAE2.120e-578.13DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYA0_9PHAE8.990e-588.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig64contigP-fluviatile_contig64:768868..769296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817050.5833683-CDS-P-fluviatile_contig64:768867..7692961622817050.5833683-CDS-P-fluviatile_contig64:768867..769296Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 768868..769296 +
1693570939.24741-CDS-P-fluviatile_contig64:768867..7692961693570939.24741-CDS-P-fluviatile_contig64:768867..769296Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 768868..769296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig64.13100.1prot_P-fluviatile_contig64.13100.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig64 768868..769296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig64.13100.1

>prot_P-fluviatile_contig64.13100.1 ID=prot_P-fluviatile_contig64.13100.1|Name=mRNA_P-fluviatile_contig64.13100.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
MIEKHSCATKTKWKTPGDNTGDGNPTSPGFGKNPPPLPHGTGTLEATVDY
LTGNKHCAIGYASTPRKNCRSLEHDAATRQQWVSASVVVQPGTRRVPVGV
RAKPFLLLQPLLVPGQVRPLFHPLLGRVHPPRPRGPSLVRSPH
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mRNA from alignment at P-fluviatile_contig64:768868..769296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig64.13100.1 ID=mRNA_P-fluviatile_contig64.13100.1|Name=mRNA_P-fluviatile_contig64.13100.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=429bp|location=Sequence derived from alignment at P-fluviatile_contig64:768868..769296+ (Porterinema fluviatile SAG_2381)
ATGATTGAGAAACACTCATGCGCAACGAAAACAAAATGGAAGACACCCGG
GGACAACACCGGGGACGGAAACCCGACATCCCCGGGTTTCGGGAAAAATC
CGCCACCCCTCCCCCACGGTACTGGCACGCTCGAAGCCACCGTTGACTAC
CTTACCGGCAACAAACATTGTGCAATAGGGTACGCATCGACTCCACGTAA
AAATTGCAGAAGTTTGGAGCATGATGCGGCTACACGTCAACAATGGGTGT
CGGCGTCCGTTGTCGTCCAACCCGGGACACGGAGGGTGCCGGTTGGCGTT
CGGGCAAAGCCGTTTCTTCTGCTCCAGCCACTCCTCGTCCCCGGCCAGGT
GAGGCCCCTCTTCCACCCCCTCCTCGGCCGCGTCCACCCGCCGCGGCCCC
GCGGCCCCTCCCTTGTCCGCTCGCCTCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig64:768868..769296+

>mRNA_P-fluviatile_contig64.13100.1 ID=mRNA_P-fluviatile_contig64.13100.1|Name=mRNA_P-fluviatile_contig64.13100.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig64:768868..769296+ (Porterinema fluviatile SAG_2381)
ATGATTGAGAAACACTCATGCGCAACGAAAACAAAATGGAAGACACCCGG
GGACAACACCGGGGACGGAAACCCGACATCCCCGGGTTTCGGGAAAAATC
CGCCACCCCTCCCCCACGGTACTGGCACGCTCGAAGCCACCGTTGACTAC
CTTACCGGCAACAAACATTGTGCAATAGGGTACGCATCGACTCCACGTAA
AAATTGCAGAAGTTTGGAGCATGATGCGGCTACACGTCAACAATGGGTGT
CGGCGTCCGTTGTCGTCCAACCCGGGACACGGAGGGTGCCGGTTGGCGTT
CGGGCAAAGCCGTTTCTTCTGCTCCAGCCACTCCTCGTCCCCGGCCAGGT
GAGGCCCCTCTTCCACCCCCTCCTCGGCCGCGTCCACCCGCCGCGGCCCC
GCGGCCCCTCCCTTGTCCGCTCGCCTCACATGATTGAGAAACACTCATGC
GCAACGAAAACAAAATGGAAGACACCCGGGGACAACACCGGGGACGGAAA
CCCGACATCCCCGGGTTTCGGGAAAAATCCGCCACCCCTCCCCCACGGTA
CTGGCACGCTCGAAGCCACCGTTGACTACCTTACCGGCAACAAACATTGT
GCAATAGGGTACGCATCGACTCCACGTAAAAATTGCAGAAGTTTGGAGCA
TGATGCGGCTACACGTCAACAATGGGTGTCGGCGTCCGTTGTCGTCCAAC
CCGGGACACGGAGGGTGCCGGTTGGCGTTCGGGCAAAGCCGTTTCTTCTG
CTCCAGCCACTCCTCGTCCCCGGCCAGGTGAGGCCCCTCTTCCACCCCCT
CCTCGGCCGCGTCCACCCGCCGCGGCCCCGCGGCCCCTCCCTTGTCCGCT
CGCCTCAC
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