mRNA_P-fluviatile_contig11.1265.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1265.1
Unique NamemRNA_P-fluviatile_contig11.1265.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1265.1 vs. uniprot
Match: D8LMZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ3_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 1.130e-115
Identity = 186/251 (74.10%), Postives = 215/251 (85.66%), Query Frame = 2 
Query:  773 KATRTQEQMEKVAEHKAAMWDYKLMLTAFRKEVQQETKERRQAEAVSAALERRRIAKRQAAARAEXXXXXXISIAINEKRKQKLKENYEAGFRECARIFFEREERKKNIHGILLEELEAESKHWINFAADINAKITDDIWETPGNNSAGGQITMPDEHLWRFSADIGLNNQEEEPSERNPYLRSRMYARMKDMGMAGTYLRERRTRWDNDTRGLLKEADRLLRKKRPAPPGYMAR--RSGSANRWNSFHEQ 1519
            KA RT+EQ +KVAEHKAA  +Y+L +TA RKEVQ+E K++R+A+AV+AALERRRIAKRQAAARAE      ISIA+NE+RKQ+LKENYEAG+RE AR+FFEREERKKNIH ILLEELEAES+HWIN   D+ AKITDD+WE PGNN+A GQI+MPDEHLWRFSAD+GL NQEE+PSER+PYLRSRMY+RM++M  AGTY RERRTRWDNDTRGLLKEADRLLRKKRP PPGYM+R   SG A +W     Q
Sbjct:   83 KARRTEEQAKKVAEHKAAEMEYRLRMTALRKEVQREVKDKREADAVTAALERRRIAKRQAAARAERKRKAAISIALNEERKQQLKENYEAGYRESARVFFEREERKKNIHAILLEELEAESEHWINTPEDVTAKITDDLWEAPGNNTAKGQISMPDEHLWRFSADVGLYNQEEDPSERDPYLRSRMYSRMQEMHTAGTYARERRTRWDNDTRGLLKEADRLLRKKRPGPPGYMSRLESSGKATQWKPMEAQ 333
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMZ3_ECTSI1.130e-11574.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3111046..3115275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001170.1
Exons5
Model size2055
Cds size735
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.3868475-UTR-P-fluviatile_contig11:3111045..31115691622815476.3868475-UTR-P-fluviatile_contig11:3111045..3111569Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3111046..3111569 -
1693561988.4054742-UTR-P-fluviatile_contig11:3111045..31115691693561988.4054742-UTR-P-fluviatile_contig11:3111045..3111569Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3111046..3111569 -
1622815476.464406-UTR-P-fluviatile_contig11:3114479..31152751622815476.464406-UTR-P-fluviatile_contig11:3114479..3115275Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3114480..3115275 -
1693561989.1085372-UTR-P-fluviatile_contig11:3114479..31152751693561989.1085372-UTR-P-fluviatile_contig11:3114479..3115275Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3114480..3115275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.3970804-CDS-P-fluviatile_contig11:3111569..31118061622815476.3970804-CDS-P-fluviatile_contig11:3111569..3111806Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3111570..3111806 -
1693561988.4143152-CDS-P-fluviatile_contig11:3111569..31118061693561988.4143152-CDS-P-fluviatile_contig11:3111569..3111806Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3111570..3111806 -
1622815476.4106975-CDS-P-fluviatile_contig11:3112159..31123631622815476.4106975-CDS-P-fluviatile_contig11:3112159..3112363Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3112160..3112363 -
1693561988.4233575-CDS-P-fluviatile_contig11:3112159..31123631693561988.4233575-CDS-P-fluviatile_contig11:3112159..3112363Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3112160..3112363 -
1622815476.4244199-CDS-P-fluviatile_contig11:3113142..31132051622815476.4244199-CDS-P-fluviatile_contig11:3113142..3113205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3113143..3113205 -
1693561989.0730464-CDS-P-fluviatile_contig11:3113142..31132051693561989.0730464-CDS-P-fluviatile_contig11:3113142..3113205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3113143..3113205 -
1622815476.4373803-CDS-P-fluviatile_contig11:3113529..31136761622815476.4373803-CDS-P-fluviatile_contig11:3113529..3113676Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3113530..3113676 -
1693561989.0880642-CDS-P-fluviatile_contig11:3113529..31136761693561989.0880642-CDS-P-fluviatile_contig11:3113529..3113676Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3113530..3113676 -
1622815476.4502988-CDS-P-fluviatile_contig11:3114395..31144791622815476.4502988-CDS-P-fluviatile_contig11:3114395..3114479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3114396..3114479 -
1693561989.0994256-CDS-P-fluviatile_contig11:3114395..31144791693561989.0994256-CDS-P-fluviatile_contig11:3114395..3114479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3114396..3114479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1265.1prot_P-fluviatile_contig11.1265.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3111570..3114479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1265.1

>prot_P-fluviatile_contig11.1265.1 ID=prot_P-fluviatile_contig11.1265.1|Name=mRNA_P-fluviatile_contig11.1265.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=245bp
MEKVAEHKAAMWDYKLMLTAFRKEVQQETKERRQAEAVSAALERRRIAKR
QAAARAERKRKAAISIAINEKRKQKLKENYEAGFRECARIFFEREERKKN
IHGILLEELEAESKHWINFAADINAKITDDIWETPGNNSAGGQITMPDEH
LWRFSADIGLNNQEEEPSERNPYLRSRMYARMKDMGMAGTYLRERRTRWD
NDTRGLLKEADRLLRKKRPAPPGYMARRSGSANRWNSFHEQANE*
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mRNA from alignment at P-fluviatile_contig11:3111046..3115275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1265.1 ID=mRNA_P-fluviatile_contig11.1265.1|Name=mRNA_P-fluviatile_contig11.1265.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4230bp|location=Sequence derived from alignment at P-fluviatile_contig11:3111046..3115275- (Porterinema fluviatile SAG_2381)
GGACTGACGACGACTGCTCCGTCAGCGGCTTTGCTCAGGGAACGATGGGC
ACAGCAGCACCTCGATCGAAGCCAAAACAAACGGGTATGAACCTTACCTC
GGTTGTGTTCGAGCGTGCCTCGTTCTTTGCATGCATTGAATTTTGCGTCA
GAATGGCAGTGAATTATCTCGTGAACCTAAAGTAATTGGCAGCCTTGCGC
TGCCGCGACTCCTTCTTTACAGAAGGGTGGTCCTCAGGTCCATGTGACCG
CAAAACCCTTGTCGGCGCTCTACATGCATCTAGGGCACTTCGCTACTTCG
GGAGCCTGTCCGACTCAAAAAGACACTGGCATTCGCGATTCTGTTTATTG
TGTGTTATCTGTGCCTGACTATCAGCAAGTGCTATGTACGTGTGCTGATA
TTCATAGGCTGCACGTTGTTGGTTTCAGGACGGCCTCGTTTGAAAGCAGC
TTTTAGTTCAAACCGATCAAACGGTTCTCATGGACATGTCCGCTTCAATG
GTCGGCTTGATGGAAACACTTGCCAGCACAAGTGTCCACATAATCTTGTC
GGCATGCACCCCCAGAGGATAGGTCTCTTTTGTTCCCCCCTCGCCGTCCT
CCGATTCCCCCTCCGTCCCCCGACCCCCTTTTCGCGACTAGCTTTTGCAG
TCGGGTTGTTGGTCCTGTGGCAGAGTTGTGCTTCGGGGAAATGTTTTGGC
GAGTGAAAAACTTTCCTCATACCTCGGAGTTGCCTTTGTTGTTCCTTTTG
TTTTGGTGAGCTGAAGAAGCGCAAGGCCACACGAACTCAAGAACAGATGG
AAAAAGTGGCGGAGCACAAGGCGGCGATGTGGGATTACAAGCTCATGTTG
ACGGCCTTTAGGAAGGAGGTCCAACAGGAGGTGAGAGCACCAACGAAACG
CCTCCTGAGGCTTACGACAAGTGCCGAAGGTCCGACCCACATCTATAACG
TGGATGAGATGTGGCATTCAGAGGCACGTCAGCCTTTTGCGCTCGGTTTT
TCAGTTGCATCCCCCCAGAGCTTCGAAAGACGAAATGCCCCTGCATAGGA
CGGAACATCTCGACACAGGCTGATGCCGGACAAGAGGGCGTCTCAATCGC
GCGGTGTCGTGGTCTGTGCCAATCGATGCAGCCGCGGTGTCGATCTGGCG
AAGGGCGGGCAAGAGAAAACAGTCACCATCTTGGTAGGGGCGGGGGCTGT
CTTACCCTGTGGGTTGTTGTTGCGTTACGATCGACAACATGCATCAGTGT
GGACTGTCATACTTTAATTTTGCTCCCAAGTTGACGTCGTTGCTGATGTG
ATGAAATTTTGGAAATGACTTGGTTTTACCTTCCTACGCAAAACTGACAA
GTGGCGGAGAGCATGTCAGACGCTCCATCTGTTGGTGCTGTAGCGGATAG
CAGTTTTTTTGCTGCTGCGCAGCTTTCCTGTTGGGACAGGGTGGGAGTAC
GCAAACGTCCCGGAGTTTGCTGTTGAACCGAAACCCCTTGCCTGTTGCGC
CCCCATACCCCATCCCAACCTTTGTGGTCGACAAAATGCTTTTGTCGACC
TTATCTGAACCCCTCGGTTCTCGATGCATCGGTGTGCCGTCGTGAATAGA
CTAAGGAGAGGAGACAAGCTGAGGCGGTGAGCGCCGCCTTGGAGCGCCGC
CGCATCGCCAAGAGGCAGGCGGCTGCCCGCGCGGAGAGGAAGAGGAAGGC
CGCCATCAGCATCGCCATCAACGAGAAGAGAAAGCAGAAACTCAAGGTGA
CTTGCCTCTCATCGCGCATCCGCCCGATCATTCAAAGCACGGGCTGTACT
TGGATTCAATCACGCTCTTACCGCCATGCACAGTTGTGATCTAACACACA
CGACACTCAGCTGCAACTATAGCTGTCTCCTCTCTTATTCGAAACTACTT
CGTTGCCGAGGCCCTCCGACGGAGAACACTTGGCGTGTCTTGCGGTGCGC
CAAGGGATATCGGCACGGTATGCGAGGTCTATGATCTACCTACAGACACA
ATGCAAGATCACGAGTAATCCCCCCCATCCCCCCCCCGCTCTCCTCCGAC
TTGACCGCGTGCCCATCCAGGAAAACTACGAGGCCGGATTCAGAGAGTGT
GCCCGGATTTTCTTCGAGCGGGAGGAGCGCAAGGTGAGGCTAATAAACTG
CTGTCTTGTGCCAGAGCGCGTCACTTTCAGAGGTGGTGTGTATGGCTGGC
TCCGAAACTTGATGCGCGCGGGGTATGTCTTGGGTGCCCACTTTCCCACG
GGATTTTGCACACACCATTCTCAAGCTGTGGTAGTTAAGTCGGGCCGCTG
GAGTTGTTTGAGCCCCAAGACCCTCCCGAACGTACGAGCTGGAGCTGACG
AAACCTTGGTCTGAAACGTGCTGGAGTCGTGTGTGCCGGATTTCGACAGG
GGTCGAGGGTCAGCCACTCGCCCATCAACGTTGGGCATCCCTGGAGCTCA
GGCGAGGCGCGGCACCGGCTTCGGAGCCGCGGTGTCGTTGCCCCAGATTC
GAATTGCTGTTCGTGCGTCTTTTTTTTTTAGAAAAGACAAGACAGAGTTC
TATGGTTTGCACGCTACATCCTGTTGTGATTCTACGTGAACTCCGTCCCC
TCCGCGCCAACGAACGGCGGCGCAGTATTCGACCCCGCGGGGCCGCAAGG
TTTCTGGCCTGGGTTGGATTGTTTTCGACGGTCAGGCTCTGGTGGGCACA
GCACATCATCGGGCGTCCCGTCTAAAACACGGCACCCCGACGTGGCCTTG
GAAGCTGGTTGCTGTGCAGAGAGATTGGCACGAGGCTCTCACACAGCAAT
GACAGTCCGAGCGTGCGGCCTTTGTGTTTGCAGCCTGATCCGCGTTTACC
TCTAGCATGACTCCACGGCGTTCGCGCGCCTCCCTACGTTTGTTTCCGTA
CGCGCCTTCTAGAAAAATATCCACGGCATCCTGTTGGAGGAGCTGGAAGC
CGAGAGCAAGCACTGGATAAACTTTGCGGCGGACATCAACGCCAAGATCA
CGGATGATATCTGGGAAACACCGGGTAACAACTCCGCGGGGGGTCAGATC
ACCATGCCGGACGAGCACCTCTGGCGGTTCTCGGCGGACATAGGTCTTAA
CAATCAGGAGGAAGAGGTGCGTTGCATTGCCTGCTGTCTTTCGACCTAAG
GAGAGCGAAGAAGTGCTGGTCCTCCTTTGTTTGTATGTTGTCGTTTCTGA
GCACAACACGGCATGCCATTCTTCAAAATATGTTGGCCATTCTTCAAAAT
ATGTTGGGATTGCAAATGAAGTTGCGGCAGTAATATTTCTGCCCTAGTCC
CCATCCTGTCAACATCCGCGGCGCAAGGAAGCCCCCGACATGTTGTGCCC
GTTGCGGTTGCTCCCCAGTCTCTCGCATTCCGGGTGCCATTGGTCCGTTT
TCCTGTTTTCGTGGCCAAACTCCCCCTCCCCCAACGTACGTCCCGCACCC
CGCCGGTCATCTCGCGCAGCCCTCCGAGCGCAACCCTTACCTGCGCTCCC
GGATGTACGCCCGCATGAAGGATATGGGCATGGCGGGCACGTACCTAAGA
GAGCGCCGCACCCGCTGGGACAACGACACGCGCGGCCTGCTCAAGGAGGC
CGACCGTCTGCTCCGCAAGAAGCGCCCGGCGCCGCCGGGTTATATGGCGC
GGCGGTCTGGCTCGGCGAACCGGTGGAATTCGTTCCACGAGCAAGCCAAC
GAGTAGTGGAGGAGCGCAAATAAGAGATCCGGCCGGGTTGGCGTTGCTGG
TTTCCACGTCTTCAATGTCGGCATCGAGGCGGGGGAGTGCGGTTGGTTTG
CACGAGAGGAGCCAGAGCGCAGGGGAAATGTGGCAGCGGTGACGTGTTGG
TTAGTCGGGATTCGGTCCGGTTGGCTTGTTTTAGGAGATGGGGGAGTGAA
TAGGGAGTGCGAACCCCGCGGTGTTTCGAAAGGTGATGTCAAATCGTGTC
GAGGGACCGCACGAGTAGGTGTGGAACGGAGAGGGGGTGAGGGCGGGTAC
GCTGTGACGGATTTAGTTCTTTCGTTGCGCCATTACTTCGGGCCCCGGGA
GTCAGGGACTTCTAGGGACTTCCGTCGAAGTCAAATTTCGTCGACCTCCC
GCAGCTTTTGGTAATGATTAGCGTGGTTTCGCATGGGTGCGGAGAGGCAG
CCATGGTTGAGTCGTTCGTTGGAGCGATACCGAGATTGGCCGACAGAATA
AACGTGCCCCACTGTTGTGGATTCGCTGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3111046..3115275-

>mRNA_P-fluviatile_contig11.1265.1 ID=mRNA_P-fluviatile_contig11.1265.1|Name=mRNA_P-fluviatile_contig11.1265.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1470bp|location=Sequence derived from alignment at P-fluviatile_contig11:3111046..3115275- (Porterinema fluviatile SAG_2381)
ATGGAAAAAGTGGCGGAGCACAAGGCGGCGATGTGGGATTACAAGCTCAT
GTTGACGGCCTTTAGGAAGGAGGTCCAACAGGAGATGGAAAAAGTGGCGG
AGCACAAGGCGGCGATGTGGGATTACAAGCTCATGTTGACGGCCTTTAGG
AAGGAGGTCCAACAGGAGACTAAGGAGAGGAGACAAGCTGAGGCGGTGAG
CGCCGCCTTGGAGCGCCGCCGCATCGCCAAGAGGCAGGCGGCTGCCCGCG
CGGAGAGGAAGAGGAAGGCCGCCATCAGCATCGCCATCAACGAGAAGAGA
AAGCAGAAACTCAAGACTAAGGAGAGGAGACAAGCTGAGGCGGTGAGCGC
CGCCTTGGAGCGCCGCCGCATCGCCAAGAGGCAGGCGGCTGCCCGCGCGG
AGAGGAAGAGGAAGGCCGCCATCAGCATCGCCATCAACGAGAAGAGAAAG
CAGAAACTCAAGGAAAACTACGAGGCCGGATTCAGAGAGTGTGCCCGGAT
TTTCTTCGAGCGGGAGGAGCGCAAGGAAAACTACGAGGCCGGATTCAGAG
AGTGTGCCCGGATTTTCTTCGAGCGGGAGGAGCGCAAGAAAAATATCCAC
GGCATCCTGTTGGAGGAGCTGGAAGCCGAGAGCAAGCACTGGATAAACTT
TGCGGCGGACATCAACGCCAAGATCACGGATGATATCTGGGAAACACCGG
GTAACAACTCCGCGGGGGGTCAGATCACCATGCCGGACGAGCACCTCTGG
CGGTTCTCGGCGGACATAGGTCTTAACAATCAGGAGGAAGAGAAAAATAT
CCACGGCATCCTGTTGGAGGAGCTGGAAGCCGAGAGCAAGCACTGGATAA
ACTTTGCGGCGGACATCAACGCCAAGATCACGGATGATATCTGGGAAACA
CCGGGTAACAACTCCGCGGGGGGTCAGATCACCATGCCGGACGAGCACCT
CTGGCGGTTCTCGGCGGACATAGGTCTTAACAATCAGGAGGAAGAGCCCT
CCGAGCGCAACCCTTACCTGCGCTCCCGGATGTACGCCCGCATGAAGGAT
ATGGGCATGGCGGGCACGTACCTAAGAGAGCGCCGCACCCGCTGGGACAA
CGACACGCGCGGCCTGCTCAAGGAGGCCGACCGTCTGCTCCGCAAGAAGC
GCCCGGCGCCGCCGGGTTATATGGCGCGGCGGTCTGGCTCGGCGAACCGG
TGGAATTCGTTCCACGAGCAAGCCAACGAGTAGCCCTCCGAGCGCAACCC
TTACCTGCGCTCCCGGATGTACGCCCGCATGAAGGATATGGGCATGGCGG
GCACGTACCTAAGAGAGCGCCGCACCCGCTGGGACAACGACACGCGCGGC
CTGCTCAAGGAGGCCGACCGTCTGCTCCGCAAGAAGCGCCCGGCGCCGCC
GGGTTATATGGCGCGGCGGTCTGGCTCGGCGAACCGGTGGAATTCGTTCC
ACGAGCAAGCCAACGAGTAG
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