mRNA_P-fluviatile_contig11.1261.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig11.1261.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 612 bits (1579), Expect = 3.710e-200 Identity = 488/1059 (46.08%), Postives = 554/1059 (52.31%), Query Frame = 1
Query: 109 ARQDFRIYMSKLLEHSAKLHTLRSETRPADLGVAAAGSGGDPAWGPPVTGPSEEDGSVGGTKRGPSESGAPDVATVPSFSPSYFRE-KHAWPRAGAVTPPRPRPPPNFSWAAEPSTQGA-----DSGAAGAAAAGRSLFSEFALSPGPPPREG----EGERLLYDELARTGGRD-GEEPEEGAIRGDEWKAEWSRRLSRGPIHSEYQDRFPWPPRSALRTSGAV------GAPSIPSLHRRGRPRSARSGATTGAGDAGLAPPARSASPLPSTRRAYVSNSR--------------GGGTGEEAGMAGARSESEPPRDRRAAGTVGHGTHPSSPAKAPDVLGGGNYAGRNDTVEAAAVSGTQGRRYLKGSVAAAXXXXSTGGEQEMNTEKGQWAGGQALGSPAPSHGPYFPEWEMVSLRE--QRSDTRGSVHGGRERAGGREHVGGDGDLPSRAATEGGGVSVAGLSLMERPGDAGAGLDVLRKRAVGRGDYTTMPRGRTLDYSQHSILTEYMDEFAWPSTLPVPGRRGKRTGMGVDHVGRLLAGERAEEP-RRVPDPGVVARLAAAADRALRAGSPGHLSEMCRLKSPSSTCRRLVMGLVVALGLRWRRWSDIRSHLLGNKPSLIAALRRFDMHRPGLTSVVLRPYAEDPNLAPAEVGRVAECLVWVSRWLRALYDYLAVREGNLADADA-----------GAASLSR----TXXXXXXXXXXXXXXXXXRLGSTSRRPRARSISSSHRGSLRGTGGVTGPASGTMVPGRGTGGRQRVAEE--ERGRSSGARGRDARTIRHPSLAAATRSDGSTCSPASTATGHGVERKVAAGGSRPDER---GLGGRVGGGAAAMSVAGSGKSGGGSGDLDNESQWTAGTVTSRGNVLGAPTEDQVDVGSSETTAQHDKENEKAATARRK----YNDDGGAGTSGGIPISS-RGRVPSTA-AATRAATAVSHLGMTSVVTEGARGSVRRGLSLGVPQRRSHSCIYRHQYKGTTPSRIANPKARRPTRARHDPILANTRWPPPVAVRAVHRTEQRSAFSTEHSLLAYE 3105
AR+DF+IYM KLLEHS L T R + R +D G +G PAWGP + G SEE GSVG + P A DV T+P FSPS FRE KHAWPRAGAVTPPRPRPPPNFSW AEP + + R S L+ P P G +G RL D GGR G E EEG D WKA+WSRRLSRGPIHSEYQDRFPWPPRSA G V GAP P H RGR SAR GAG GGG G D AAG G G+ PS +A G G G D A XXXX P + L R+ SV+ +E GR DG PSRAA GG G +L+ GD A +V R AVGRG+ TTM GRTLD+S SILTEYMDE+AWPS+LP PGRRGKR+GMGVDHVGRLLAG RAEEP R++PDP VVARL AAADRAL AGS GHLSEMCRLKSP CRRL++GLV+ALGLRWRRWSDIR+HLLGNKP L L+RF+ R GL S L P+ EDP+L+PAEV RVA C+VWV RWL AL+DYLAV+EG D D A L+R + G RRP A S + GT G + TM ++E+ ++G G G R R PS AAATR D STC P ST TG E GGSR + G GGR GG + V GDL++ESQWT GTVTSRG+VL PTEDQVD+GSS K N + A + G+P S R RV ST AA RA T T G RGSVRRGLS G Q SH+CIYRH++KG TPSR+ANPKARRP +A HDPILANTRWPPPV V A RTEQRSA+S EHS LAY+
Sbjct: 3 ARKDFKIYMDKLLEHSTALDTFRPDKRHSDAGDTGSGV---PAWGPSL-GMSEEGGSVGEARGSPPAGAAVDV-TMPPFSPSRFREEKHAWPRAGAVTPPRPRPPPNFSWMAEPGSPASRXXXXXXXXXXXXXXARKSLSSADLASSPAPAAGGPRIKGGRLSADLGMDDGGRSWGAEEEEGEEDADAWKAQWSRRLSRGPIHSEYQDRFPWPPRSAF--LGTVDDDAFNGAPPPP--HPRGRRASAR-----GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYPRDGGGVGGXXXXX--XXXXXXXVDTAAAGRGGEGS-PSDGRRA----GTGRLPG-GDLEMAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSEQTSGLEVIGHRTSRASSVYDEKEWEAGRGSEA-DGGWPSRAADVGGSSMAGGATLIGSAGDVAA-AEVWRGEAVGRGEVTTMSGGRTLDFSSQSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVIALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAVKEGKELDVDTMPMFQEPATSRSRAKLARRRQSSGCRAHGTVPGTVPPDGASKGREGRRPGAGEGGSGTQPRKSGTAAAAGATAATMG----------LSEQKHDQGHHHGRGG--TRKTRRPSRAAATRGDDSTCPPGSTPTGGDTE-----GGSRGEGFRYFGEGGR-GGDGGKVDV---------DGDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVG-GGKGNVRKAPHKHAGXXXXXXXXXXXXXXGVPASPPRRRVRSTGDAARRAGTGTLGFEETLAPKGGRRGSVRRGLSRGDTQA-SHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILANTRWPPPVDVPAQERTEQRSAYSLEHSFLAYD 1008
BLAST of mRNA_P-fluviatile_contig11.1261.1 vs. uniprot
Match: A0A6H5JPQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ9_9PHAE) HSP 1 Score: 117 bits (292), Expect = 1.800e-27 Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 2833 SVVTEGARGSVRRGLSLGVPQRRSHSCIYRHQYKGTTPSRIANPKARRPTRARHDPILANTRWPPPVAVRAVHRTEQRSAFSTEHSLLAYE 3105
S + EG R + R GLS G Q SH+CIYRH+ KG TPSR+ANPKARRP +A HDPILAN RWPPPV V A RTEQRSA+S EHS LAY+
Sbjct: 2 SPLKEGPRRAARGGLSRGGTQV-SHACIYRHKLKGRTPSRVANPKARRPVQAAHDPILANIRWPPPVDVPAQERTEQRSAYSLEHSSLAYD 91 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig11.1261.1 >prot_P-fluviatile_contig11.1261.1 ID=prot_P-fluviatile_contig11.1261.1|Name=mRNA_P-fluviatile_contig11.1261.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1036bp TRAEHTDGATHSTNMSLPSAFLTGRAGCSQPQSIEQARQDFRIYMSKLLEback to top mRNA from alignment at P-fluviatile_contig11:3091096..3101586- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig11.1261.1 ID=mRNA_P-fluviatile_contig11.1261.1|Name=mRNA_P-fluviatile_contig11.1261.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=10491bp|location=Sequence derived from alignment at P-fluviatile_contig11:3091096..3101586- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig11:3091096..3101586- >mRNA_P-fluviatile_contig11.1261.1 ID=mRNA_P-fluviatile_contig11.1261.1|Name=mRNA_P-fluviatile_contig11.1261.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=6216bp|location=Sequence derived from alignment at P-fluviatile_contig11:3091096..3101586- (Porterinema fluviatile SAG_2381)back to top |