mRNA_P-fluviatile_contig11.1245.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig11.1245.1 vs. uniprot
Match: D7G4P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P5_ECTSI) HSP 1 Score: 297 bits (760), Expect = 4.780e-93 Identity = 199/380 (52.37%), Postives = 241/380 (63.42%), Query Frame = 2
Query: 278 MEAWNEIHHINVNDLLFALGLRGGRRNLRLSTGGICIINAEDRKGKQSESLQKG-GADDRHQPFKPCKAEFCLEQEGRLEVLLLKRQAPPAANTMGEVSIRARRKKAADSARAAALEAARDGKHDELEDIKNSLQEEFLAGQSLRDKLSSTKAEWEAMGEVLHNLSADKARLTKEEAFESMPEHLRRSLPTGLVEAIKELSFSTPQSCFTRKSGRPRTVYAILEDGMPGGRIESRQGSSCAGLSFAR-GAHSASSTSIEQENFSVWPCTPPRSRAETGAKFPPLQLVVSPIQSGSSVGGVMALDEKEKAKRRERQKARLIRRAEEWRKAAG--------GTGTEGDEV*GGYVDRNTGDDWP*SRSATASDTGAGQRQRR 1387
M AWNE+HH+NV DLLFALGLR GR T G AEDR+G+ L+ G GA DRHQP +PCKA+ CLE+E R+E LL KR A + E SIRARR++AA SAR+ A EA+RD K +E D+L S K + A+ EVLH+LSADKAR +EEA +SMP HLRRSLP+GL EA + L+F P S TR +GR TV+AILEDGMPGGR+E+R G S GLS + GA SA S S ++++ +VWP TPPR R +TGAKFPPLQL VSPI+ +SVGGV LDE E RR++QKARL RRA EW KAAG GTG + G+ DW RS TA D AG +RR
Sbjct: 1 MAAWNEVHHLNVTDLLFALGLREGRPRGGSGTEGGKSRKAEDRRGEAG--LEGGDGAVDRHQPVQPCKADSCLEREDRMEKLLEKRAA------LQEASIRARRRQAAASARSTASEASRDDKTEE-------------------DRLVSMKTHYAALEEVLHHLSADKARHKREEAVDSMPAHLRRSLPSGLAEARRGLNFCVPPSRATRSTGRLETVFAILEDGMPGGRLETR-GESVHGLSARQQGAASAPSLSFDEDSIAVWPTTPPRRRLQTGAKFPPLQLTVSPIRC-ASVGGVATLDEDEIGVRRDKQKARLRRRAREWWKAAGSIDDGERGGTGHHRPDPSRGHPGGGGWRDW---RSVTACDADAGVDRRR 348
BLAST of mRNA_P-fluviatile_contig11.1245.1 vs. uniprot
Match: A0A6H5LHM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHM0_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.660e-49 Identity = 119/236 (50.42%), Postives = 147/236 (62.29%), Query Frame = 2
Query: 707 RDKLSSTKAEWEAMGEVLHNLSADKARLTKEEAFESMPEHLRRSLPTGLVEAIKELSFSTPQSCFTRKSGRPRTVYAILEDGMPGGRIESRQGSSCAGLSFARG-AHSASSTSIEQENFSVWPCTPPRSRAETGAKFPPLQLVVSPIQSGSSVGGVMALDEKEKAKRRERQKARLIRRAEEWRKAAG--------GTGTEGDEV*GGYVDRNTGDDWP*SRSATASDTGAGQRQRR 1387
+D+L S K + A+ EVLH+LSADKAR +EEA +SMP HLRRSLP+GL EA + L+F S R TV+AILEDGMPGGR+E+R G S GLS + A +A S S ++++ +VWP TPPR R +TGAKFPPLQL VSPI+ SSVG V LDE E RR++QK+R RRA EW AAG GTG + G+ DW RS T DT A +RR
Sbjct: 17 QDRLVSMKTHYAALEEVLHHLSADKARHKREEAVDSMPAHLRRSLPSGLAEARRGLNFCVLPS-------RLETVFAILEDGMPGGRLETR-GESVHGLSARQQEAATAPSLSFDEDSIAVWPTTPPRRRLQTGAKFPPLQLTVSPIRCASSVGDVATLDEDEIGLRRDKQKSRPRRRAREWWNAAGSIDDGERAGTGRHRPDPCRGHPGGGGSRDW---RSVTVCDTDARVDRRR 241 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig11.1245.1 >prot_P-fluviatile_contig11.1245.1 ID=prot_P-fluviatile_contig11.1245.1|Name=mRNA_P-fluviatile_contig11.1245.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=339bp MEAWNEIHHINVNDLLFALGLRGGRRNLRLSTGGICIINAEDRKGKQSESback to top mRNA from alignment at P-fluviatile_contig11:2902847..2910109- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig11.1245.1 ID=mRNA_P-fluviatile_contig11.1245.1|Name=mRNA_P-fluviatile_contig11.1245.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7263bp|location=Sequence derived from alignment at P-fluviatile_contig11:2902847..2910109- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig11:2902847..2910109- >mRNA_P-fluviatile_contig11.1245.1 ID=mRNA_P-fluviatile_contig11.1245.1|Name=mRNA_P-fluviatile_contig11.1245.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2034bp|location=Sequence derived from alignment at P-fluviatile_contig11:2902847..2910109- (Porterinema fluviatile SAG_2381)back to top |