prot_P-fluviatile_contig6.12516.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig6.12516.1
Unique Nameprot_P-fluviatile_contig6.12516.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length102
Homology
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.210e-57
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG-FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDDEANAKGEGPDGDANGMDEEEDEG 101
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRG E+DEANAK +G +G ANGMDEEEDEG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEG-ANGMDEEEDEG 101          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: C1EHA5_MICCC (Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC)

HSP 1 Score: 142 bits (358), Expect = 2.550e-42
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDDEANA 82
            PVNPKPFLN+LTGKP++VKLKWGMEYKGFLVS D YMNL L STEEYVDG+FAGNLG+VLIRCNNVLYLRGAED+  +A
Sbjct:    6 PVNPKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYLRGAEDEGGDA 84          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 140 bits (352), Expect = 2.160e-41
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDDE 79
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYLRG  +DE
Sbjct:    1 MATVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDE 80          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 140 bits (352), Expect = 2.740e-41
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDDE 79
            + PVNPKPFLN LTGKPVMVKLKWGMEYKGFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  +DE
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDE 87          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: A0A7S0SJP6_9CHLO (Sm protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 3.090e-41
Identity = 63/77 (81.82%), Postives = 72/77 (93.51%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDD 78
            + PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVS D YMNL L STEEY+DG+FAGNLG+VLIRCNNVLYLRGAE++
Sbjct:    4 SVPVNPKPFLNQLTGKPVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYLRGAEEE 80          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 139 bits (349), Expect = 6.370e-41
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGA-EDDE 79
            PVNPKPFLN LTGKPV+VKLKWGMEYKGFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYLRG  EDDE
Sbjct:    7 PVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYLRGVPEDDE 83          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 138 bits (348), Expect = 8.780e-41
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDDE 79
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKGFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  +DE
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDE 79          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 138 bits (347), Expect = 1.210e-40
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDDE 79
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEYVDG+F GNLG++LIRCNNVLYLRG  +DE
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDE 80          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: A0A6I9QRJ1_ELAGV (Sm protein F n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6I9QRJ1_ELAGV)

HSP 1 Score: 139 bits (349), Expect = 1.240e-40
Identity = 62/78 (79.49%), Postives = 72/78 (92.31%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDDE 79
            A PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F+GNLG++LIRCNNVLYLRG  +DE
Sbjct:   27 AVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDE 104          
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 138 bits (347), Expect = 1.320e-40
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEDDE 79
            + PVNPKPFLN LTGKPVMVKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  +DE
Sbjct:    4 SVPVNPKPFLNTLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDE 81          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12516.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI3.210e-5792.16Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
C1EHA5_MICCC2.550e-4283.54Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=... [more]
A0A176VZF1_MARPO2.160e-4182.50Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
A0A7J6WA49_THATH2.740e-4180.77Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A7S0SJP6_9CHLO3.090e-4181.82Sm protein F n=1 Tax=Mantoniella antarctica TaxID=... [more]
A0A7I8LGH6_SPIIN6.370e-4185.71Sm protein F n=1 Tax=Spirodela intermedia TaxID=51... [more]
A0A6P9F5Z8_JUGRE8.780e-4178.48Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A804J679_MUSAM1.210e-4081.25Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]
A0A6I9QRJ1_ELAGV1.240e-4079.49Sm protein F n=3 Tax=Mesangiospermae TaxID=1437183... [more]
A0A835M2E4_9MAGN1.320e-4079.49Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 4.4E-23
score: 92.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..72
e-value: 3.8E-20
score: 71.3
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..83
e-value: 1.2E-36
score: 122.4
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..81
NoneNo IPR availableGENE3D2.30.30.100coord: 1..84
e-value: 3.5E-30
score: 105.3
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN POLYPEPTIDE Fcoord: 1..81
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:1965898..1969182 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12516.1mRNA_P-fluviatile_contig6.12516.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig6 1965898..1969182 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig6.12516.1 ID=prot_P-fluviatile_contig6.12516.1|Name=mRNA_P-fluviatile_contig6.12516.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEY
VDGEFAGNLGDVLIRCNNVLYLRGAEDDEANAKGEGPDGDANGMDEEEDE
G*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf