mRNA_P-fluviatile_contig6.12349.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12349.1
Unique NamemRNA_P-fluviatile_contig6.12349.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: D8LFC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFC8_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 6.120e-95
Identity = 166/302 (54.97%), Postives = 182/302 (60.26%), Query Frame = 1 
Query:    1 MTLGRQLKGHTGPITQLAFDPSASCCLFSASEDGTVRFEISKKRVAEAADCEDSGLALDLALAHAMFFSLFQRKEGSLPLLLLLLLPPGLRAYLSCQSLRELVSWPMSAKRESLDPRPLTLLGFRRTRPSARGWDTRTRGTAVTLGNSGDDE-VYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVRALACGEPPV-ADDGGGAGA 900
            M L  ++KGHTGP+TQLAF PS     FSASEDGTVR                                                                                               GWDTR+  T +TLG SG++E +YSMALGYDGRLCA GKDCLIEF+DLRKAGKPLG+Y+ECHTDAVTQV FHPHKRSFMLTGSEDGLMCFFDTEVS+E+DALDSVMNAEC VR+VGFFGPEGEGVYCCTNTETLSLWHAAGAQR+K+FGDVRALA GE    AD G G GA
Sbjct:   78 MALAGKVKGHTGPLTQLAFAPSDPSSFFSASEDGTVR-----------------------------------------------------------------------------------------------GWDTRSLATTITLGESGEEEEIYSMALGYDGRLCATGKDCLIEFYDLRKAGKPLGSYSECHTDAVTQVRFHPHKRSFMLTGSEDGLMCFFDTEVSLEEDALDSVMNAECPVRSVGFFGPEGEGVYCCTNTETLSLWHAAGAQRIKDFGDVRALARGENLADADVGAGDGA 284
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: A0A7S3YAZ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAZ1_HETAK)

HSP 1 Score: 162 bits (409), Expect = 3.210e-43
Identity = 81/151 (53.64%), Postives = 103/151 (68.21%), Query Frame = 1 
Query:  394 RGWDTRTRGTAVTLGNSGDDEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            +GWDTRT  + +T   S   EV+ +ALGYD  L AAG    ++FFD+R + + LG YTE H+DAVTQVAF P K   + TGSEDGL+C +DT V  EDDAL +VMN +CA+R +GFFG    G+YC T TE LSLWH   AQ++ + GD R
Sbjct:  100 KGWDTRTLSSGLTFSTS--YEVHDIALGYDDNLIAAGMPERVQFFDVRSS-RQLGEYTESHSDAVTQVAFCPDKPGLLATGSEDGLVCVYDTGVPCEDDALVAVMNPDCALRRLGFFGAGSPGLYCLTGTEGLSLWHWGTAQQIADAGDAR 247
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: K3WPC6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPC6_GLOUD)

HSP 1 Score: 145 bits (366), Expect = 2.800e-36
Identity = 70/149 (46.98%), Postives = 99/149 (66.44%), Query Frame = 1 
Query:  400 WDTRTRGTAVTLGNSGDDEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            WD R+R  A+ +      EV+S+++G    L AAG D    FFD+R  GK LG Y E H DAVT+V FHP +  F++T SEDG++C FDT +S ED+A++S++N E AV  +GFFGP+ E +YC T+TETL LW+   A+R+  +  +R
Sbjct:  107 WDLRSRLPAMVIPVG--HEVWSLSVGNGDTLLAAGTDVKAHFFDVR-TGKKLGEYGESHVDAVTRVRFHPTQPHFVVTASEDGIVCMFDTHISDEDEAIESILNVESAVSKIGFFGPQMENIYCLTSTETLDLWNINTAERIHHYDRIR 252
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: A0A225WZ64_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZ64_9STRA)

HSP 1 Score: 144 bits (364), Expect = 4.600e-36
Identity = 72/151 (47.68%), Postives = 99/151 (65.56%), Query Frame = 1 
Query:  400 WDTRTRGTA--VTLGNSGDDEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            WDTR    A  V +G     EV+S+A+G    L A G D L  F+D+R  GK LG Y E H DA+T+V FHP +++F++T SEDG++CFFD  +  EDDAL+S++N E AV  VGFFGP+ E ++C T TETL LW+   A+R+  +  +R
Sbjct:  106 WDTRAALPAMVVPVGR----EVWSLAIGCGETLLATGTDELALFYDVR-TGKQLGQYGESHVDAITKVRFHPTQQAFIVTASEDGVVCFFDCRIPDEDDALESILNVESAVSRVGFFGPQNENIFCLTGTETLDLWNIWTAERLHHYNTIR 251
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: A0A0W8D6X8_PHYNI (Replication factor C subunit 2 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D6X8_PHYNI)

HSP 1 Score: 144 bits (363), Expect = 8.670e-36
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 1 
Query:  400 WDTRTRGTAVTLGNSGDDEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            WDTRT   A+ L      EV+S+++G    L A G D L  F+D+R  G  LG Y E H DA+T+V FHP + +F++T SEDG++CFFD  +  EDDAL+S++N E AV TVGFFGP+ E ++C T TETL LW+   A+R+  +  +R
Sbjct:  108 WDTRTALPAMVLPVG--REVWSLSIGCGETLLATGTDELALFYDVR-TGNKLGQYGESHVDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESIINVESAVTTVGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYDTIR 253
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: H3GVV6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVV6_PHYRM)

HSP 1 Score: 141 bits (356), Expect = 8.550e-35
Identity = 71/151 (47.02%), Postives = 99/151 (65.56%), Query Frame = 1 
Query:  400 WDTRTRGTA--VTLGNSGDDEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            WDTR    A  V +G     EV+S+++G    L AAG D L  F+D+R   K LG Y + H DA+T+V FHP ++SF++T SEDG++C FD  +  EDDAL+S++N E AV TVGFFGP+ E ++C T TETL LW+   A+R+  +  +R
Sbjct:  110 WDTRAALPALVVPVGR----EVWSLSIGCGETLLAAGTDELALFYDVRTGAK-LGQYGDSHVDAITKVRFHPTQQSFVVTASEDGVVCVFDCRIPDEDDALESILNVESAVSTVGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYATIR 255
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: G4Z594_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z594_PHYSP)

HSP 1 Score: 141 bits (355), Expect = 1.410e-34
Identity = 70/151 (46.36%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:  400 WDTRTRGTA--VTLGNSGDDEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            WDTR    A  V +G     EV+S+++G    L AAG D L  F+D+R  G  LG Y E H DA+T+V FHP + +F++T SEDG++CFFD  +  EDDAL+S++N E A+  +GFFGP+ E ++C T TETL LW+   AQR+  +  +R
Sbjct:  112 WDTRAALPAMVVPVGR----EVWSLSVGCGETLLAAGTDELALFYDVR-TGAQLGQYGESHVDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESILNVESAITNIGFFGPQKENIFCLTGTETLDLWNLWTAQRLHHYATIR 257
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: A0A3R7H5D5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H5D5_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.150e-34
Identity = 69/151 (45.70%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:  400 WDTRTRGTA--VTLGNSGDDEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            WDTR    A  V +G     EV+S+++G    L A G + L  F+D+R  G  LG Y E H DA+T+V FHP + +F++T SEDG++CFFD  +  EDDAL+S++N E AV T+GFFGP+ E ++C T TETL LW+   A+R+  +  +R
Sbjct:  110 WDTRAALPAMVVPVGR----EVWSLSIGCGETLLATGTNELAMFYDVR-TGNKLGEYGESHIDAITKVRFHPTQPAFVVTASEDGVVCFFDCRIPDEDDALESILNVESAVTTIGFFGPQKENIFCLTGTETLDLWNLWTAERLHHYATIR 255
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: M4BA93_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BA93_HYAAE)

HSP 1 Score: 136 bits (342), Expect = 7.490e-34
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = 1 
Query:  457 VYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            V+S+++G +  L A G D    F+D+R  G  LG Y+E H DA+TQV FHP + +F+ T SEDG++C FD  +S EDDAL+S++N E AV T+GFFGP+ E +YC T +ETL LW+   A+R+  +  +R
Sbjct:    9 VWSLSIGCEETLLAVGTDDCALFYDVR-TGSKLGEYSESHVDAITQVRFHPTQSAFVATASEDGVVCLFDCRISDEDDALESIVNVESAVATLGFFGPQKEKIYCLTGSETLDLWNIWTAERLHHYDTIR 137
[Close]
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Match: M4BA89_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BA89_HYAAE)

HSP 1 Score: 137 bits (345), Expect = 9.140e-34
Identity = 69/151 (45.70%), Postives = 97/151 (64.24%), Query Frame = 1 
Query:  400 WDTRTRGTA--VTLGNSGDDEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVAFHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGPEGEGVYCCTNTETLSLWHAAGAQRMKEFGDVR 846
            WDTR    A  V +G     EV+S+++G +  L A G D    F+D+R  G  LG Y+E H DA+TQV FHP + +F+ T SEDG++C FD  +S EDDAL+S++N E AV T+GFFG + E +YC T +ETL LW+   A+R+  +  +R
Sbjct:  103 WDTRMALAAMEVPVGR----EVWSLSVGCEETLLAVGTDDCALFYDVR-TGSKLGEYSESHVDAITQVRFHPTQSAFVATASEDGVVCLFDCRISDEDDALESIVNVESAVATLGFFGSQKEKIYCLTGSETLDLWNIWTAERLHHYDTIR 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFC8_ECTSI6.120e-9554.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3YAZ1_HETAK3.210e-4353.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3WPC6_GLOUD2.800e-3646.98Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A225WZ64_9STRA4.600e-3647.68Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A0W8D6X8_PHYNI8.670e-3647.65Replication factor C subunit 2 n=14 Tax=Phytophtho... [more]
H3GVV6_PHYRM8.550e-3547.02Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
G4Z594_PHYSP1.410e-3446.36Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A3R7H5D5_9STRA5.150e-3445.70Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
M4BA93_HYAAE7.490e-3447.69Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
M4BA89_HYAAE9.140e-3445.70Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:293781..297215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.1
Seed ortholog evalue1.5e-78
Seed eggNOG ortholog2880.D8LFC8
Preferred nameWDR89
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0010029,GO:0032991,GO:0040008,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048580,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:1900140,GO:2000026
EggNOG free text desc.WD40 repeats
EggNOG OGsKOG1188@1,KOG1188@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons6
Model size1172
Cds size1170
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12349.1prot_P-fluviatile_contig6.12349.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 293781..297215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816975.3272164-CDS-P-fluviatile_contig6:293780..2938821622816975.3272164-CDS-P-fluviatile_contig6:293780..293882Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 293781..293882 -
1693570645.4487283-CDS-P-fluviatile_contig6:293780..2938821693570645.4487283-CDS-P-fluviatile_contig6:293780..293882Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 293781..293882 -
1622816975.3391664-CDS-P-fluviatile_contig6:294655..2947371622816975.3391664-CDS-P-fluviatile_contig6:294655..294737Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 294656..294737 -
1693570645.4586515-CDS-P-fluviatile_contig6:294655..2947371693570645.4586515-CDS-P-fluviatile_contig6:294655..294737Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 294656..294737 -
1622816975.3494825-CDS-P-fluviatile_contig6:294992..2952881622816975.3494825-CDS-P-fluviatile_contig6:294992..295288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 294993..295288 -
1693570645.4667423-CDS-P-fluviatile_contig6:294992..2952881693570645.4667423-CDS-P-fluviatile_contig6:294992..295288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 294993..295288 -
1622816975.3584363-CDS-P-fluviatile_contig6:295664..2957601622816975.3584363-CDS-P-fluviatile_contig6:295664..295760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 295665..295760 -
1693570645.4746053-CDS-P-fluviatile_contig6:295664..2957601693570645.4746053-CDS-P-fluviatile_contig6:295664..295760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 295665..295760 -
1622816975.3677146-CDS-P-fluviatile_contig6:296050..2961731622816975.3677146-CDS-P-fluviatile_contig6:296050..296173Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 296051..296173 -
1693570645.482212-CDS-P-fluviatile_contig6:296050..2961731693570645.482212-CDS-P-fluviatile_contig6:296050..296173Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 296051..296173 -
1622816975.3802507-CDS-P-fluviatile_contig6:296744..2972151622816975.3802507-CDS-P-fluviatile_contig6:296744..297215Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 296745..297215 -
1693570645.4896455-CDS-P-fluviatile_contig6:296744..2972151693570645.4896455-CDS-P-fluviatile_contig6:296744..297215Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 296745..297215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12349.1

>prot_P-fluviatile_contig6.12349.1 ID=prot_P-fluviatile_contig6.12349.1|Name=mRNA_P-fluviatile_contig6.12349.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=390bp
MTLGRQLKGHTGPITQLAFDPSASCCLFSASEDGTVRFEISKKRVAEAAD
CEDSGLALDLALAHAMFFSLFQRKEGSLPLLLLLLLPPGLRAYLSCQSLR
ELVSWPMSAKRESLDPRPLTLLGFRRTRPSARGWDTRTRGTAVTLGNSGD
DEVYSMALGYDGRLCAAGKDCLIEFFDLRKAGKPLGTYTECHTDAVTQVA
FHPHKRSFMLTGSEDGLMCFFDTEVSIEDDALDSVMNAECAVRTVGFFGP
EGEGVYCCTNTETLSLWHAAGAQRMKEFGDVRALACGEPPVADDGGGAGA
GDRGGGAQQGRLRRARIGALPWIVSSAVSTTRRRIDCGWSPAATRAGRAW
RPSLRKGGIRSRSAISCGWGRRSPPGAKTPRFVPGGHSMG
back to top

mRNA from alignment at P-fluviatile_contig6:293781..297215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12349.1 ID=mRNA_P-fluviatile_contig6.12349.1|Name=mRNA_P-fluviatile_contig6.12349.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3435bp|location=Sequence derived from alignment at P-fluviatile_contig6:293781..297215- (Porterinema fluviatile SAG_2381)
ATGACCCTGGGTAGACAACTGAAGGGACACACAGGCCCCATCACGCAGCT
GGCGTTCGATCCCTCGGCTTCGTGCTGTTTATTTTCGGCATCGGAGGACG
GGACTGTAAGGTTTGAGATTTCAAAAAAACGTGTGGCAGAGGCAGCCGAT
TGCGAGGATTCAGGTCTTGCTCTTGATCTCGCACTCGCTCACGCCATGTT
TTTCTCCCTGTTCCAGAGAAAGGAAGGAAGTTTGCCACTGCTGCTCTTGC
TGCTCTTGCCTCCGGGATTGCGAGCGTATTTATCTTGTCAGTCATTGCGG
GAGCTGGTTTCGTGGCCCATGTCGGCGAAGCGAGAGTCGCTTGACCCCCG
CCCCCTGACACTCCTGGGTTTTCGTCGAACGCGCCCGTCCGCCAGAGGCT
GGGACACCCGAACCCGCGGCACTGCGGTCACACTAGGAAATTCCGGCGAT
GATGAGGTGTACAGCATGGCGGTGAGTGAATCTAGCTTTGTTCACCGTAA
AACTTGCGTATATCGTCGCGAAAACTGAACTCGGTCAAAGCTTCGAAAGG
CCGTTTGTCACGCGGTTTCGCACGGCACTCCGCCCGACGATTGTCGATCC
AAAAGCGGAGGTTCTTCCCAATTGCCGTTGTCTGCCGCAGCAGCCGTAGC
GTTTTCTCTGTTGTCCGACGGCGGCGCTTGTTTCCCTTCTCCTTCTCGGC
TGCGGGAAGATGCATCATCTGTCGTCCATTCTGTCCCCTTGATAGCCTTT
CCTGTGGTGCCAGCCCCTTTGTGGGTGCTTTTCTCTCCTGTGGCTGATGG
GGACTATCTCTTCGTCTCGACTTCGCGCCCGGTCGTGCAGTAGTGGTCAA
TGCACACTTTCTGTGTTCGTCTTGCCCGCTTGTGTTCCTTTTGACCGACC
ATCTGTGGGTCCGCTACTGTGCTTTGGCTATTCCTTGGTTTGGCAATCAC
CCGAATGCTTAGCCTTCGACCACTCCGTGGCCCTTTCTCTCTGACTGGCG
ATTCTTTGGCCCTTTCCTCTGCTTGTGGCTGCTTCGATGCAGCTGGGCTA
CGACGGCCGGCTGTGTGCCGCCGGCAAGGACTGCTTGATCGAGTTTTTCG
ACCTCAGAAAAGCGGGGAAGCCGCTCGGGACGTACACGGAGTGCCACACA
GACGCTGTTACTCAGGTGACAGTATCTTGCACCGGACCACACCAATGGTA
GATATCCTGTACCCAAGCAGCGTGCATTCAGCGCACCCGACAGACGCTGT
CAATGCCCGTTCCCCGCGATGCAGAACAATAGTAAGGTCATATATTGTCA
CAGCAAGGGGCAATCAAGGTACGTGCTTTGCTCAGGGAATAAAGCAAAGG
AAAATGATGCTGGATATACAGCATTGCAATTTATCTACCTCCCGCCGCAG
CTTTGGTCTGAATCAATCCTGTACCAATGCATCTGCTCGAACTTCGACAT
CACAGGTTGCTTTTCACCCTCACAAGAGATCCTTCATGCTCACCGGCTCT
GAGGACGGTCTGATGTGTTTTTTCGACACCGAGGTCTCCATCGAGGACGA
TGTGAGGATCGCCTGCGAGTGATGGGCTTCTGATTTCCATCGTGGGGAGA
AAGTCGGAACGCCTTGGCGCAAATTTTGAATCAGCAGCGCGCAGATTCCA
ATCTGTATAAAAGGAGCGACATGAAGAGATGTTCTGGCTTTGCCGTCTTC
TTTCTTGCCGGGTTGTGTTTGCTTTGTCTTTAAGCATGCGGATAATGTAG
GAACAACAGTACCGACAATGACAAGTCTCACCCAGTTCCTAGCGAAAATG
GATACTAACGACGAAAGCCTGGTCTCGATTCGACCTTCCGGTCGTTGCTA
AGGCCGCAACACCCAGGTTTTTTCCACCAACGCCCTCGCCATAAACTTCC
GTCTGTCACCGGGCTTGCCCTGAGCAGGCGCTAGACTCCGTGATGAACGC
GGAGTGCGCCGTCCGCACCGTGGGGTTCTTCGGGCCAGAGGGGGAAGGAG
TCTATTGCTGCACCAACACGGAGACGCTCTCGCTGTGGCACGCCGCGGGG
GCCCAGCGGATGAAGGAATTCGGGGACGTCCGAGCGTTGGCGTGCGGGGA
GCCGCCGGTGGCCGACGATGGAGGGGGCGCTGGTGCTGGGGATAGAGGGG
GGGGGGCGCAGCAGGGGCGGCTGCGGCGGGCAAGGATTGGGGCGTTGCCG
TGGATTGTATCGTCGGCTGTCAGGTAGTTATGTTCTTGTTGTACCGCGAT
CGCGTGCAGAGTGAAACTTCCCTTTCGCATTGAGCTTGGTGTTGCCAGGG
AGGTGCCGGGCTTTCGTTTGAAGCAACTGCAACTACAGCGAGATTCACAC
ATGCCCTCCTCGTGCCTAAGTCTGTCGCCGCCATACCTCTGGCGCTTTTA
TACCTCGTTGCGGCCGCCGTTCGTCGGGCGCTTCTTGTACCTCTTTTTTT
ATTTCGTGCTGCCGCTCTGCCAATGCAGTACGACGCGGCGGCGGATCGAC
TGCGGCTGGTCACCAGCAGCTACCAGGGCGGGGCGTGCCTGGCGACCGTC
ACTCCGGAAGGTATGTGCGGGCAAGTTGTGGGACATTTCGCCCTACTGCT
CCAATTCTCAAACCTCGACACTCTTGCGGGGAGAGAGGTGATTGCTCTGC
CACAGCGTCGTTCCAAATGCGTTCTCTAGAGCTTTGCTTTCACGCATTTT
TCGTATTGCTCATGTCCTTGTCGTCGAGACATCGAGCTTCGTCCTGTAGC
AACATCGGCGTCAATATGGGCGGGGGGGGATTCACGACGATTGTGCGCCG
GAGTATTTTGTTTCCATTTTGTTGTTGTGGTGACGGTCGTTGTTTGCAGC
CGTTGTTCGCTATTTTGAGTGTATTGGAATGATCGATCAGCGGTGGTGGT
ATGGCGGTGGTTCGAGGATTGTCTGCGAGGCTTCGAACGAACACCGTCCG
GATATTGAATGCAACTGGCGGAATTTTTCCCCATATCGCTGCGGAGATCT
GCTCAGGATACCTCACCCGCTATTAGCCACTTTGGAATGGCCCGACCCTG
ATCTAGACGCGTTCGCGTTCTGTTGTGAACACCTACACATCTTTGGCAGG
AGTTGAACATCCCCATCCTGTGTTAGTTGGACTTCCTGTCGTAACGGGGT
ACACATGCTTCATTCTCGTGTTCTAGGTTATGATAAATGCATCACACGTT
GATTGCTCCCGTGAAAACCCGTTTTCGACCCGAAGGATTATCGTTATCCT
TCTGATTTGCATGGATTGCTTGCGTGCATGCGCGTGTGTCGGTGCCGGTT
CTCCAGGCGTGAGTCCGGATGCGGTGTTGGAAGGGGGGCATACGGAGCAG
ATCCGCAATTTCGTGTGGATGGGGCAGGCGATCGCCACCGGGGGCGAAGA
CGCCAAGATTTGTTCCTGGCGGGCACTCAATGGGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig6:293781..297215-

>mRNA_P-fluviatile_contig6.12349.1 ID=mRNA_P-fluviatile_contig6.12349.1|Name=mRNA_P-fluviatile_contig6.12349.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2340bp|location=Sequence derived from alignment at P-fluviatile_contig6:293781..297215- (Porterinema fluviatile SAG_2381)
ATGACCCTGGGTAGACAACTGAAGGGACACACAGGCCCCATCACGCAGCT
GGCGTTCGATCCCTCGGCTTCGTGCTGTTTATTTTCGGCATCGGAGGACG
GGACTGTAAGGTTTGAGATTTCAAAAAAACGTGTGGCAGAGGCAGCCGAT
TGCGAGGATTCAGGTCTTGCTCTTGATCTCGCACTCGCTCACGCCATGTT
TTTCTCCCTGTTCCAGAGAAAGGAAGGAAGTTTGCCACTGCTGCTCTTGC
TGCTCTTGCCTCCGGGATTGCGAGCGTATTTATCTTGTCAGTCATTGCGG
GAGCTGGTTTCGTGGCCCATGTCGGCGAAGCGAGAGTCGCTTGACCCCCG
CCCCCTGACACTCCTGGGTTTTCGTCGAACGCGCCCGTCCGCCAGAGGCT
GGGACACCCGAACCCGCGGCACTGCGGTCACACTAGGAAATTCCGGCGAT
GATGAGGTGTACAGCATGGCGATGACCCTGGGTAGACAACTGAAGGGACA
CACAGGCCCCATCACGCAGCTGGCGTTCGATCCCTCGGCTTCGTGCTGTT
TATTTTCGGCATCGGAGGACGGGACTGTAAGGTTTGAGATTTCAAAAAAA
CGTGTGGCAGAGGCAGCCGATTGCGAGGATTCAGGTCTTGCTCTTGATCT
CGCACTCGCTCACGCCATGTTTTTCTCCCTGTTCCAGAGAAAGGAAGGAA
GTTTGCCACTGCTGCTCTTGCTGCTCTTGCCTCCGGGATTGCGAGCGTAT
TTATCTTGTCAGTCATTGCGGGAGCTGGTTTCGTGGCCCATGTCGGCGAA
GCGAGAGTCGCTTGACCCCCGCCCCCTGACACTCCTGGGTTTTCGTCGAA
CGCGCCCGTCCGCCAGAGGCTGGGACACCCGAACCCGCGGCACTGCGGTC
ACACTAGGAAATTCCGGCGATGATGAGGTGTACAGCATGGCGCTGGGCTA
CGACGGCCGGCTGTGTGCCGCCGGCAAGGACTGCTTGATCGAGTTTTTCG
ACCTCAGAAAAGCGGGGAAGCCGCTCGGGACGTACACGGAGTGCCACACA
GACGCTGTTACTCAGCTGGGCTACGACGGCCGGCTGTGTGCCGCCGGCAA
GGACTGCTTGATCGAGTTTTTCGACCTCAGAAAAGCGGGGAAGCCGCTCG
GGACGTACACGGAGTGCCACACAGACGCTGTTACTCAGGTTGCTTTTCAC
CCTCACAAGAGATCCTTCATGCTCACCGGCTCTGAGGACGGTCTGATGTG
TTTTTTCGACACCGAGGTCTCCATCGAGGACGATGTTGCTTTTCACCCTC
ACAAGAGATCCTTCATGCTCACCGGCTCTGAGGACGGTCTGATGTGTTTT
TTCGACACCGAGGTCTCCATCGAGGACGATGCGCTAGACTCCGTGATGAA
CGCGGAGTGCGCCGTCCGCACCGTGGGGTTCTTCGGGCCAGAGGGGGAAG
GAGTCTATTGCTGCACCAACACGGAGACGCTCTCGCTGTGGCACGCCGCG
GGGGCCCAGCGGATGAAGGAATTCGGGGACGTCCGAGCGTTGGCGTGCGG
GGAGCCGCCGGTGGCCGACGATGGAGGGGGCGCTGGTGCTGGGGATAGAG
GGGGGGGGGCGCAGCAGGGGCGGCTGCGGCGGGCAAGGATTGGGGCGTTG
CCGTGGATTGTATCGTCGGCTGTCAGGCGCTAGACTCCGTGATGAACGCG
GAGTGCGCCGTCCGCACCGTGGGGTTCTTCGGGCCAGAGGGGGAAGGAGT
CTATTGCTGCACCAACACGGAGACGCTCTCGCTGTGGCACGCCGCGGGGG
CCCAGCGGATGAAGGAATTCGGGGACGTCCGAGCGTTGGCGTGCGGGGAG
CCGCCGGTGGCCGACGATGGAGGGGGCGCTGGTGCTGGGGATAGAGGGGG
GGGGGCGCAGCAGGGGCGGCTGCGGCGGGCAAGGATTGGGGCGTTGCCGT
GGATTGTATCGTCGGCTGTCAGTACGACGCGGCGGCGGATCGACTGCGGC
TGGTCACCAGCAGCTACCAGGGCGGGGCGTGCCTGGCGACCGTCACTCCG
GAAGTACGACGCGGCGGCGGATCGACTGCGGCTGGTCACCAGCAGCTACC
AGGGCGGGGCGTGCCTGGCGACCGTCACTCCGGAAGGGGGGCATACGGAG
CAGATCCGCAATTTCGTGTGGATGGGGCAGGCGATCGCCACCGGGGGCGA
AGACGCCAAGATTTGTTCCTGGCGGGCACTCAATGGGGGGGGGCATACGG
AGCAGATCCGCAATTTCGTGTGGATGGGGCAGGCGATCGCCACCGGGGGC
GAAGACGCCAAGATTTGTTCCTGGCGGGCACTCAATGGGG
back to top