mRNA_P-fluviatile_contig6.12323.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12323.1
Unique NamemRNA_P-fluviatile_contig6.12323.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: D8LCU6_ECTSI (ADP-ribose pyrophosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCU6_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 3.170e-93
Identity = 148/202 (73.27%), Postives = 165/202 (81.68%), Query Frame = 3 
Query:  258 LRYRYLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVKDSWARCRFGTTTAVDSSDGVDKGITVEDRASGQILSKYPPEAGAGLQPKV----LGALVPAEAKS 851
            L +RY WPRP+VTVDCLI+ALDEG PWILLIKRKNDPFKG WALPGGFVD+NE LD AARRELEEET VTN T+VQTGAYGDPGRDPRGHTITVAFMAWAPS+A+C+ARAGDDAAEA FFPV RLP+MAFDHLKV+ DSWARCRFG T     +DG   G++VED+ASGQ L +Y   + +G    V    LG LVP EA S
Sbjct:   96 LPFRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNDPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYGDPGRDPRGHTITVAFMAWAPSKAACSARAGDDAAEARFFPVERLPSMAFDHLKVITDSWARCRFGAT-----NDGG--GVSVEDKASGQALGEYSTSSTSGAAGSVGAEALGLLVPVEASS 290
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: A0A6V1NPN0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NPN0_HETAK)

HSP 1 Score: 197 bits (502), Expect = 3.390e-56
Identity = 95/178 (53.37%), Postives = 126/178 (70.79%), Query Frame = 3 
Query:  258 LRYRYLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVKDSWARCRFGTTTAVDSSDGVDKGITVE--DRASGQILSKYP 785
            L Y+Y WPRPSVT D +IFA++E  P++LLIKR N PF+G+WALPGGF+D  E L+  A REL+EET V    L Q GA+GDPGRDPRG T+TVAFMA APSRA   A+A DDA + ++FP+  LP++AFDHLK+++++W RC+    T   +  G D  ++    DRA+G+ L   P
Sbjct:   33 LPYKYRWPRPSVTTDIVIFAVEEAIPYVLLIKRGNPPFQGSWALPGGFLDLGEGLEACAARELQEETGVAGLPLAQVGAFGDPGRDPRGPTVTVAFMALAPSRA-IGAKAADDAVDEEWFPLTNLPSLAFDHLKILEEAWQRCKPEPMTTPGAEAGADPALSTALIDRATGKPLGSVP 209
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: A0A7S2XUX9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUX9_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.720e-50
Identity = 84/160 (52.50%), Postives = 114/160 (71.25%), Query Frame = 3 
Query:  261 RYRYLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDP-RGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVKDSWARCRFGTTTAVDSSDGVDKG 737
            RY Y WPRPSVT D  +F +++G  W+LLIKR  +PF+G WALPGGF+++ E LD  + RELEEETS++   +VQ GA+ DPGRDP RGH +TVA+ A AP + S   +A DDAA+A++F V RLP +AFDH  ++K +WAR +F TT      + +D+G
Sbjct:   22 RYHYRWPRPSVTTDSAVFTIEDGAAWVLLIKRLKEPFQGCWALPGGFLEDMEGLDACSARELEEETSISGLPMVQVGAFADPGRDPTRGHVLTVAYAACAPYK-SIGVKAQDDAADAEWFQVSRLPPLAFDHFDIMKVAWARIQFTTTPGKSLIEAIDRG 180
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: I2CQQ6_NANGC (Nudix hydrolase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CQQ6_NANGC)

HSP 1 Score: 176 bits (447), Expect = 2.330e-48
Identity = 91/172 (52.91%), Postives = 116/172 (67.44%), Query Frame = 3 
Query:  270 YLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVKDSWARCRFGTTTAVDSSDGVDKGITVEDRASGQILSKYP 785
            Y +PRPSVTVD L+F LDE    ILL++R N+PFKG WALPGGFVD++E LD AA REL EET++ + +  Q G YG PGRDPRGHTITVA+ A+  S  S  ARAGDDA EA FF  G LP +AFDH K+++++W R        V   +G      V++R + Q+L + P
Sbjct:   49 YKYPRPSVTVDTLVFCLDETQMKILLVQRGNEPFKGAWALPGGFVDQDEGLDSAAARELREETALDSISFAQVGTYGQPGRDPRGHTITVAYTAFLLS--SEGARAGDDAREAKFFAFGSLPPLAFDHKKIIEETWMRL------VVCDKEGT---TVVKERGAQQVLCRLP 209
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: A0A3M2HH92_9BACT (NUDIX hydrolase n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M2HH92_9BACT)

HSP 1 Score: 158 bits (399), Expect = 2.170e-42
Identity = 77/142 (54.23%), Postives = 97/142 (68.31%), Query Frame = 3 
Query:  264 YRYLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVKDSWARCR 689
            Y Y +PRP V+VD L+    E    +LLI+R  +PF G WALPGGFV+ENE L+ AA+REL+EET V N  L Q GA+GDPGRDPRGH IT+ +    P  AS + RAGDDA  A++FPV RLP +AFDH +++     R R
Sbjct:    3 YTYPYPRPMVSVDILLLRRAEEGEKVLLIQRDREPFAGRWALPGGFVEENEPLEAAAQRELQEETGVENIPLEQLGAFGDPGRDPRGHVITIVYGGILPEDASSSLRAGDDARRAEWFPVDRLPPLAFDHDQIISRCLPRLR 144
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: UPI0019E754FB (NUDIX hydrolase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=UPI0019E754FB)

HSP 1 Score: 156 bits (395), Expect = 6.580e-42
Identity = 74/137 (54.01%), Postives = 101/137 (73.72%), Query Frame = 3 
Query:  258 LRYRYLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVK 668
            + Y Y +PRP+VTVD +IF L +  P +LLIKR NDP+KG+WALPGGFVD++E L+ AA REL+EET +T+  L Q   +G+PGRDPRGHT++V ++ +    ++  ARAGDDAA A++F    LP +AFDH  VV+
Sbjct:    1 MSYTYTFPRPAVTVDIIIFRLSDNNPEVLLIKRGNDPYKGHWALPGGFVDKDEPLETAAARELKEETGLTDILLTQMHTFGNPGRDPRGHTVSVVYVGYLTDEST--ARAGDDAAAAEWFKTEELPDLAFDHDVVVE 135
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: A0A1G2YDB5_9BACT (Nudix hydrolase domain-containing protein n=1 Tax=Planctomycetes bacterium GWF2_50_10 TaxID=1801959 RepID=A0A1G2YDB5_9BACT)

HSP 1 Score: 156 bits (395), Expect = 9.270e-42
Identity = 79/137 (57.66%), Postives = 100/137 (72.99%), Query Frame = 3 
Query:  261 RYRYLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPA-MAFDHLKVVK 668
            +Y Y WPRP VTVD +IF LD G P +LLI+R N+PFKG WA+PGGFVD +E L DAA+REL+EETS+TN  L Q   +G PGRDPRG  IT+ F   A    + +A+AGDDAA+A +F +  LPA +AFDH +V+K
Sbjct:    5 KYIYEWPRPMVTVDAVIFKLDRGKPRVLLIQRGNEPFKGQWAVPGGFVDMDEDLLDAAKRELQEETSLTNIELEQFHTFGKPGRDPRGRNITICFFGIA--NPTQHAKAGDDAAKAKWFDIENLPANLAFDHDEVLK 139
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: A0A2N2Y1B4_9BACT (NUDIX hydrolase n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-21 TaxID=2013690 RepID=A0A2N2Y1B4_9BACT)

HSP 1 Score: 154 bits (389), Expect = 4.820e-41
Identity = 74/139 (53.24%), Postives = 100/139 (71.94%), Query Frame = 3 
Query:  258 LRYRYLWPRPSVTVDCLIFALDEG-TPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVKD 671
            ++Y Y +PRP V  DC++    +G TP ILLI+RKNDPFKGNWALPGGFVD +E L+ AA RELEEET ++   ++Q  AYG PGRDPRG  I++ +   A +    +A AGDDAA+  +F + +LPA+AFDH K+++D
Sbjct:    1 MKYCYEYPRPMVCCDCIVVWKSQGQTPRILLIERKNDPFKGNWALPGGFVDMDEDLEHAALRELEEETGISLIKMMQFAAYGQPGRDPRGRNISIVYYHVADTE--LDAHAGDDAAQTQWFDIDKLPALAFDHEKIIRD 137
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: A0A662A2J4_9BACT (NUDIX hydrolase n=2 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A662A2J4_9BACT)

HSP 1 Score: 154 bits (389), Expect = 4.820e-41
Identity = 76/137 (55.47%), Postives = 99/137 (72.26%), Query Frame = 3 
Query:  258 LRYRYLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVK 668
            + Y Y +PRP+VTVD +IF   E    +LLIKR NDPFKG WALPGGFVD++E L+ AA RELEEET ++   L Q   +GDPGRDPRGHT++VA++ + P  A   A+AGDDA EA++F +  LP +AFDH  +V+
Sbjct:    1 MAYTYPFPRPTVTVDIIIFRQSEKDHEVLLIKRGNDPFKGKWALPGGFVDKDEVLEIAAARELEEETGLSGILLTQMHTFGDPGRDPRGHTVSVAYVGYLPIGAV--AKAGDDADEAEWFKLNDLPELAFDHKLIVE 135
[Close]
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Match: UPI0004B4B9AE (NUDIX hydrolase n=1 Tax=Alkaliflexus imshenetskii TaxID=286730 RepID=UPI0004B4B9AE)

HSP 1 Score: 154 bits (390), Expect = 4.870e-41
Identity = 76/137 (55.47%), Postives = 96/137 (70.07%), Query Frame = 3 
Query:  258 LRYRYLWPRPSVTVDCLIFALDEGTPWILLIKRKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGDPGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDHLKVVK 668
            + YRY +PRPSVT D ++ A  EG+  ILLI+R ++P K  WALPGGFVDENE L D A REL EET +    L Q GA+G PGRDPRGHTIT+AF+   P R    A AGDDA  A++FP+  LP +AFDH ++++
Sbjct:    1 MMYRYEYPRPSVTADVVLLAGSEGSQSILLIQRAHEPHKDMWALPGGFVDENEDLPDTAVRELFEETGIERVGLKQIGAFGKPGRDPRGHTITIAFLGIIPDRVL--AVAGDDAKHAEWFPINELPPLAFDHHEIIE 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCU6_ECTSI3.170e-9373.27ADP-ribose pyrophosphatase n=2 Tax=Ectocarpus TaxI... [more]
A0A6V1NPN0_HETAK3.390e-5653.37Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2XUX9_9STRA1.720e-5052.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I2CQQ6_NANGC2.330e-4852.91Nudix hydrolase n=2 Tax=Nannochloropsis gaditana T... [more]
A0A3M2HH92_9BACT2.170e-4254.23NUDIX hydrolase n=1 Tax=Calditrichaeota bacterium ... [more]
UPI0019E754FB6.580e-4254.01NUDIX hydrolase n=1 Tax=Bacteroidetes bacterium Ta... [more]
A0A1G2YDB5_9BACT9.270e-4257.66Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A2N2Y1B4_9BACT4.820e-4153.24NUDIX hydrolase n=1 Tax=Bacteroidetes bacterium HG... [more]
A0A662A2J4_9BACT4.820e-4155.47NUDIX hydrolase n=2 Tax=Bacteroidetes bacterium Ta... [more]
UPI0004B4B9AE4.870e-4155.47NUDIX hydrolase n=1 Tax=Alkaliflexus imshenetskii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:46604..50656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.3
Seed ortholog evalue4.7e-80
Seed eggNOG ortholog2880.D8LCU6
KEGG koko:K03574
EggNOG free text desc.NUDIX domain
EggNOG OGs2S8UU@2759,COG1051@1
EC3.6.1.55
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADP-ribose pyrophosphatase
Ec32 orthologEc-07_006940.1
Exons5
Model size1634
Cds size672
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816972.742806-UTR-P-fluviatile_contig6:46603..467661622816972.742806-UTR-P-fluviatile_contig6:46603..46766Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 46604..46766 +
1693570638.4038823-UTR-P-fluviatile_contig6:46603..467661693570638.4038823-UTR-P-fluviatile_contig6:46603..46766Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 46604..46766 +
1622816972.7565331-UTR-P-fluviatile_contig6:47190..472301622816972.7565331-UTR-P-fluviatile_contig6:47190..47230Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 47191..47230 +
1693570638.4161212-UTR-P-fluviatile_contig6:47190..472301693570638.4161212-UTR-P-fluviatile_contig6:47190..47230Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 47191..47230 +
1622816972.8158023-UTR-P-fluviatile_contig6:49897..506561622816972.8158023-UTR-P-fluviatile_contig6:49897..50656Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 49898..50656 +
1693570638.46599-UTR-P-fluviatile_contig6:49897..506561693570638.46599-UTR-P-fluviatile_contig6:49897..50656Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 49898..50656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816972.7697947-CDS-P-fluviatile_contig6:47230..474201622816972.7697947-CDS-P-fluviatile_contig6:47230..47420Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 47231..47420 +
1693570638.4257905-CDS-P-fluviatile_contig6:47230..474201693570638.4257905-CDS-P-fluviatile_contig6:47230..47420Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 47231..47420 +
1622816972.780932-CDS-P-fluviatile_contig6:47862..479671622816972.780932-CDS-P-fluviatile_contig6:47862..47967Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 47863..47967 +
1693570638.4358768-CDS-P-fluviatile_contig6:47862..479671693570638.4358768-CDS-P-fluviatile_contig6:47862..47967Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 47863..47967 +
1622816972.7916186-CDS-P-fluviatile_contig6:48591..487521622816972.7916186-CDS-P-fluviatile_contig6:48591..48752Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 48592..48752 +
1693570638.4460704-CDS-P-fluviatile_contig6:48591..487521693570638.4460704-CDS-P-fluviatile_contig6:48591..48752Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 48592..48752 +
1622816972.803856-CDS-P-fluviatile_contig6:49681..498971622816972.803856-CDS-P-fluviatile_contig6:49681..49897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 49682..49897 +
1693570638.4562736-CDS-P-fluviatile_contig6:49681..498971693570638.4562736-CDS-P-fluviatile_contig6:49681..49897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 49682..49897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12323.1prot_P-fluviatile_contig6.12323.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 47231..49897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12323.1

>prot_P-fluviatile_contig6.12323.1 ID=prot_P-fluviatile_contig6.12323.1|Name=mRNA_P-fluviatile_contig6.12323.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=224bp
MASSSSAATGSNSEDSQTLRYRYLWPRPSVTVDCLIFALDEGTPWILLIK
RKNDPFKGNWALPGGFVDENESLDDAARRELEEETSVTNCTLVQTGAYGD
PGRDPRGHTITVAFMAWAPSRASCNARAGDDAAEADFFPVGRLPAMAFDH
LKVVKDSWARCRFGTTTAVDSSDGVDKGITVEDRASGQILSKYPPEAGAG
LQPKVLGALVPAEAKSARGSRRT*
back to top

mRNA from alignment at P-fluviatile_contig6:46604..50656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12323.1 ID=mRNA_P-fluviatile_contig6.12323.1|Name=mRNA_P-fluviatile_contig6.12323.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4053bp|location=Sequence derived from alignment at P-fluviatile_contig6:46604..50656+ (Porterinema fluviatile SAG_2381)
ACCTTTTGCCCGCTTTTTTTGCTGGTAGTGTCTCACACTGCCCACCTCAC
CGTCGAACGGCGGCCTTCGCCTCCTTCAGCGGAAGATCGATATCTACAGC
AGCGGTTGCAACAGGGGGCAGAGGACGAGAAGCAAACACGCATCTTGGGA
CGTTTGTACAGCGGTGAGGTTGCAGCCCTACAGAAGATAGGTTGAATAAG
TGTCGGGAAATGAAGCTTTTTTTTCGAGCCCTGGTCGATTCGCAGGAAGC
AAATACCAGCAGTGTTGTTGACTTGGCGGCATACCTCGGAAAAATTCGCC
TTATGTTATTGATAAACGGCGCGTTTGCAGGGCTTGCGCTGCTGCCGCAC
GGCAAAGCACGATTGATTGTGGTATGTATGCGGTTGCAGGAAGTACGAAA
GCGAACATTTCGCCAACGAAATATCGGAGAAGCTTTCGAAAATATTGGGA
TATTGTGCTCCCTTGAACATTAACGTAACTGTCATTCAATCGCTCAAATT
GTTTCTGGGACCGTCTGTAGCGCGCTCTTTTCCCTTGCGATCAGCTCCAC
CCACCCGCCGACGTCCCAAAAATATCCATTAACGAAGGCTTGAGCGACAA
TCAGCAGCGGCGGCGGCGGTGCAAGTCATGGCATCCTCTTCATCTGCGGC
CACCGGGAGTAATTCTGAAGACAGCCAGACCCTGCGCTACCGGTACCTCT
GGCCTCGGCCGAGCGTGACGGTCGACTGCCTGATTTTCGCGCTGGACGAA
GGAACTCCGTGGATCCTTCTCATCAAGAGGAAGAACGACCCCTTCAAGGG
AAACTGGGCACTGCCGGGTAATTTTGGCAGTTTGCTAACGTGTGCTGCAC
AACCTGACTACCACCGTCGTATCTCTCCTTTGTTTGAGATGGGGGCACTT
TGATTGATCAGGTCTGCTTCTTTGTGTGTCTCTTTTCAAGCCCGAGGGGG
CTTTGGTGAGGTCTGCTCTTTGTATGTGTCTGGCTACACGCCCTCGGGCG
CTTCGGTAAGCTGTTTTGTTGCCGGACTGCCTTGAGCAGGTTCAGACGAA
TCCAAACCAGCCTTCTTTGCGAACACAACATACGTTCTCACGGAAGCAGA
CGTTGGACTTGCGCGTGAATGCCATGATTTCACCCGAAATTCGCCATGGA
GAACGACGGCCTCAACAACAACAAAGGCGATCTCGTGGTATAATTTCCCC
GTCCTCCAAAAATTGCTCATTCTCGTCATGCGTTATGCGTTGTTCGGAAC
CCCTCATAGGGGGCTTCGTGGATGAGAACGAGAGTCTAGACGACGCCGCC
CGAAGAGAGCTAGAAGAAGAAACGAGCGTCACCAACTGCACACTGGTGCA
GACCGGCGCGTACGGTGAGTATATTTCTTGTGTGCGTTGGCCGCTCAGCT
CGTGAAACCGCGGCGAAAAGACAGCAACAGCAGTTGCAAGTTTGCCGCGG
CTGAGAACAAGCACATCATCGGATTCGCATAGGGAGGGCAACGCGGAGAA
AGCTGATGAGAGCGGAACCACCCGGCTCGGCTTGACTCTCGGGAAATTCG
GACATGAGTTGGACCTCGGCCGATCACGGTGTTGTTTCTTGACCTTAGCC
GCCGACCGCTATTCCTTCCCGTAAAATTAAAAGCGAAATCTTTGCGGAGC
CCCGTTCTGCCGAGGAACCGCGACTTGCGCATTCCAAGGGCGTCAAATAG
ACCTCCTTGGCTCACGGCTTCATCTCCGATTGATTCCGGCGAGAAATCCT
GCCTGCCTTTTTCCTTCAGGTCCACCATCACCGTTGCTGGCCGCGCGGGG
GACTGGTTATGAGCGCCGTTCCCGCTCCTCTCCCCCCTTGACGTTTGCGC
GGAATTGATTTCTGAAGGGATCCACAAGCCCCTCCTTTGGCAATGAATCC
TGAACCCTGCCCCCCCTAATCTATAACTTGCCCTAACCCCTTTTCTCTGG
AACGGAGCCCTGAACCCTGATTTTCGTTCTCGAATCAGGTGACCCTGGGC
GGGATCCCCGAGGTCACACAATTACGGTGGCGTTTATGGCTTGGGCTCCG
TCCAGAGCATCCTGCAACGCTCGCGCGGGAGACGATGCCGCCGAGGCCGA
TTTCTTCCCGGTGGGGCGTCTCCCGGCCATGGCGTTCGACCACCTCAAGG
TGTGTATGTGAGCATGAGAAAGAGAGAGCGAGCGAGAGAGAGAGAGAAAC
AGACAGACAGACAGACAGACAGACAGACAGAGTCCACAACATAGTCACGG
CGTTCGGGCATCTCAAGGTGAGAGCGAGCGGATGGCGCCGGTCTCATGGC
GTTCGACCACAGCAAGATGAAGGAAGAAGCCGACTTTAATGTGGCGCTCG
GCAAGCTCAAGGTGGGGGAAAGTTGTCATAGAGGTGTGTCGAGAGCGGCA
CAATTACGGCTGATGTCTCCTCTCGCTTCGAGGTCCGCCGAATCTCATTT
TGCCGCTCAACCGACACCTGCCGCTGGCGGGCGCATTGACGCCTCTTGCC
TTGAGTTGGTCGAATGTCATTTTGGCTTGCCACTATCTGCTGGCGGCGAG
CCCAGTCAAGCCTCTCACGTTGAGGTCGTTTTGTGCCCTCTTGTGGTGCG
ACTGGACGATCTCAACGTGAGAGGCGTAATTTTGTCCTCGCCGCAAGTAG
GCACTCGTTGTACGCCATGAGGACATTGGACCACCACAAGGTTTGGTTCC
ACACGGGGGTACGAACAGATGAAGTAGCGTGCCATCGCTTTCCGTCCTCA
CGCTATGTTTTGTTTCAGGCATCTTCCCCCGAGACCCATCTGCATAACCT
AACAGATGGGAGAGTCAATTGAACACGTGCACGGGGGAGGCTGGACAAGA
ATTTTTCGAAACTCGCTTTCGGTGTGGCGCAGTTGGCCTTTGGAATCCAC
CCTGAGAGCGTGCGCGATGGATTGCACCTTCACGGCAAAATATTCTCAAC
GTTTGCTCCTGCGTCTCCGCGTAATATTTAGGTGTAACACGATCTCGAAA
ATACCCGTAGAACAGACGCGGTGCGTGCCGTGCCACCTTCACGTGTGGTT
TACTTCGAAACCGTCCCGTTTGACTCAGGTGGTGAAGGACTCGTGGGCAA
GGTGTCGGTTCGGGACGACGACAGCCGTTGACAGCAGCGATGGAGTGGAC
AAGGGCATCACCGTGGAAGACAGGGCAAGCGGGCAGATTCTTTCCAAATA
CCCCCCCGAGGCCGGGGCGGGTTTACAGCCGAAAGTCCTGGGAGCGCTTG
TGCCTGCAGAGGCGAAGTCCGCGCGGGGGTCACGCAGGACCTGAAAAGCG
TTACGGCTGTCGTTGGGTAGAGGGCAATGAGTGGTTGGCCCGATTTCGTG
GCACGTGAAAATGTACGCGGCGGATTCTTCCCGCACGCACGTAAGTGCTT
TCGATGGGCGTATGAAATCGATTTCCAGACTTTGCAGGACTTGAGGCTGA
GGCTGGAAGTGTGCGACCGCCGACCAAATCATGCGGTCGAGGATCCCATC
TTACAGGCTGCCTCCAGAAACGCAAATGAATGGCTCGGATGCATGTGGGC
ATCGGCTGCCGCCGTTAGCAGTCCGCAGCCTGTGACGCTGCGTAGAACGT
GACAGAAACTCGCCGCGGAGTGCGCCAGCTTGGAAAAACTGTTCAATGCG
TTCCAGGCATGCTTGCACCCCAAGGCCTTTTATTGTGTGTGCGAATGCGC
CGTCGACCCTACGAGCGCGTGCCTTTCGCCGTTGCGTGAACGTCTCAGAA
GGAAATCCTTGCGCGAGGCCTCCACTCGGCCAAAGAGCGTGCGCCGTTTT
TTCGTTTGTCACTGATCATCGACGGCTTCAAGAGGGAGGGGCTGTGGGCA
GAGGTGTGATCGGGTGCCAGGAGACACCGCCGAGACCTCACGTGTCTAGC
TTCCGTGGGCTCCAAGAAATCGGTCGGTAACGAGGAGCGCGGGTTACGAA
AAATGGGGTCACGAAAGCCGGCCTAAAAAAAAATGGCCTTTAAAAACGAC
CTTAAAAAAATGGTCTCAAAAACTTCGTCTAGGTCCAAGAGTTTCCGAGC
AGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig6:46604..50656+

>mRNA_P-fluviatile_contig6.12323.1 ID=mRNA_P-fluviatile_contig6.12323.1|Name=mRNA_P-fluviatile_contig6.12323.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1344bp|location=Sequence derived from alignment at P-fluviatile_contig6:46604..50656+ (Porterinema fluviatile SAG_2381)
ATGGCATCCTCTTCATCTGCGGCCACCGGGAGTAATTCTGAAGACAGCCA
GACCCTGCGCTACCGGTACCTCTGGCCTCGGCCGAGCGTGACGGTCGACT
GCCTGATTTTCGCGCTGGACGAAGGAACTCCGTGGATCCTTCTCATCAAG
AGGAAGAACGACCCCTTCAAGGGAAACTGGGCACTGCCGGATGGCATCCT
CTTCATCTGCGGCCACCGGGAGTAATTCTGAAGACAGCCAGACCCTGCGC
TACCGGTACCTCTGGCCTCGGCCGAGCGTGACGGTCGACTGCCTGATTTT
CGCGCTGGACGAAGGAACTCCGTGGATCCTTCTCATCAAGAGGAAGAACG
ACCCCTTCAAGGGAAACTGGGCACTGCCGGGGGGCTTCGTGGATGAGAAC
GAGAGTCTAGACGACGCCGCCCGAAGAGAGCTAGAAGAAGAAACGAGCGT
CACCAACTGCACACTGGTGCAGACCGGCGCGTACGGGGGCTTCGTGGATG
AGAACGAGAGTCTAGACGACGCCGCCCGAAGAGAGCTAGAAGAAGAAACG
AGCGTCACCAACTGCACACTGGTGCAGACCGGCGCGTACGGTGACCCTGG
GCGGGATCCCCGAGGTCACACAATTACGGTGGCGTTTATGGCTTGGGCTC
CGTCCAGAGCATCCTGCAACGCTCGCGCGGGAGACGATGCCGCCGAGGCC
GATTTCTTCCCGGTGGGGCGTCTCCCGGCCATGGCGTTCGACCACCTCAA
GGTGACCCTGGGCGGGATCCCCGAGGTCACACAATTACGGTGGCGTTTAT
GGCTTGGGCTCCGTCCAGAGCATCCTGCAACGCTCGCGCGGGAGACGATG
CCGCCGAGGCCGATTTCTTCCCGGTGGGGCGTCTCCCGGCCATGGCGTTC
GACCACCTCAAGGTGGTGAAGGACTCGTGGGCAAGGTGTCGGTTCGGGAC
GACGACAGCCGTTGACAGCAGCGATGGAGTGGACAAGGGCATCACCGTGG
AAGACAGGGCAAGCGGGCAGATTCTTTCCAAATACCCCCCCGAGGCCGGG
GCGGGTTTACAGCCGAAAGTCCTGGGAGCGCTTGTGCCTGCAGAGGCGAA
GTCCGCGCGGGGGTCACGCAGGACCTGAGTGGTGAAGGACTCGTGGGCAA
GGTGTCGGTTCGGGACGACGACAGCCGTTGACAGCAGCGATGGAGTGGAC
AAGGGCATCACCGTGGAAGACAGGGCAAGCGGGCAGATTCTTTCCAAATA
CCCCCCCGAGGCCGGGGCGGGTTTACAGCCGAAAGTCCTGGGAGCGCTTG
TGCCTGCAGAGGCGAAGTCCGCGCGGGGGTCACGCAGGACCTGA
back to top