mRNA_P-fluviatile_contig6.12372.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12372.1
Unique NamemRNA_P-fluviatile_contig6.12372.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:482581..483119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size541
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816970.5999215-CDS-P-fluviatile_contig6:482580..4829521622816970.5999215-CDS-P-fluviatile_contig6:482580..482952Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 482581..482952 +
1693570634.3634505-CDS-P-fluviatile_contig6:482580..4829521693570634.3634505-CDS-P-fluviatile_contig6:482580..482952Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 482581..482952 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816970.61584-UTR-P-fluviatile_contig6:482952..4831191622816970.61584-UTR-P-fluviatile_contig6:482952..483119Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 482953..483119 +
1693570634.3746808-UTR-P-fluviatile_contig6:482952..4831191693570634.3746808-UTR-P-fluviatile_contig6:482952..483119Porterinema fluviatile SAG_2381UTRP-fluviatile_contig6 482953..483119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12372.1prot_P-fluviatile_contig6.12372.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 482581..482952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12372.1

>prot_P-fluviatile_contig6.12372.1 ID=prot_P-fluviatile_contig6.12372.1|Name=mRNA_P-fluviatile_contig6.12372.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=124bp
NVAGTPSSTSRRSPWPPAVFRHVTPTTKAYRYIQDRLSTITKKGVKVNLY
HRIWITVWEQNVASIEARSIRANSVRDETSVGAPTTNENGCDTLGAWKLR
PRFFSCRMRAAYARNSRTLWNRS*
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mRNA from alignment at P-fluviatile_contig6:482581..483119+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12372.1 ID=mRNA_P-fluviatile_contig6.12372.1|Name=mRNA_P-fluviatile_contig6.12372.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=539bp|location=Sequence derived from alignment at P-fluviatile_contig6:482581..483119+ (Porterinema fluviatile SAG_2381)
AACGTCGCTGGAACGCCGTCATCAACTTCACGCCGCAGTCCTTGGCCACC
TGCCGTGTTCCGGCACGTAACCCCCACCACAAAAGCATACAGATATATCC
AAGATCGTCTGTCCACGATAACAAAAAAGGGCGTGAAGGTAAACCTCTAT
CACAGAATCTGGATAACCGTTTGGGAACAAAATGTGGCTTCAATCGAGGC
GCGGAGTATCCGAGCAAACTCTGTTCGGGACGAGACCTCCGTTGGCGCCC
CGACCACGAATGAGAACGGATGCGACACTTTGGGGGCTTGGAAACTGCGC
CCACGATTTTTCTCTTGCAGGATGCGCGCCGCATACGCTCGGAACTCGCG
TACATTGTGGAACAGGTCGTGACATGATTCGAGAGCAGCGTCCAGGCCTA
CTTACGTTACTGTGCAAGCCCCACCCCCCTACCTGACTGGTACTCTGGAC
TTTTGCTATCTCAAGATTTGGGACAGGCAATAGATGCCTAGGTTGGAATG
AGAAGCGACGTTCTATTAAGGCTAGGACTACGGAAAGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig6:482581..483119+

>mRNA_P-fluviatile_contig6.12372.1 ID=mRNA_P-fluviatile_contig6.12372.1|Name=mRNA_P-fluviatile_contig6.12372.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=744bp|location=Sequence derived from alignment at P-fluviatile_contig6:482581..483119+ (Porterinema fluviatile SAG_2381)
AACGTCGCTGGAACGCCGTCATCAACTTCACGCCGCAGTCCTTGGCCACC
TGCCGTGTTCCGGCACGTAACCCCCACCACAAAAGCATACAGATATATCC
AAGATCGTCTGTCCACGATAACAAAAAAGGGCGTGAAGGTAAACCTCTAT
CACAGAATCTGGATAACCGTTTGGGAACAAAATGTGGCTTCAATCGAGGC
GCGGAGTATCCGAGCAAACTCTGTTCGGGACGAGACCTCCGTTGGCGCCC
CGACCACGAATGAGAACGGATGCGACACTTTGGGGGCTTGGAAACTGCGC
CCACGATTTTTCTCTTGCAGGATGCGCGCCGCATACGCTCGGAACTCGCG
TACATTGTGGAACAGGTCGTGAAACGTCGCTGGAACGCCGTCATCAACTT
CACGCCGCAGTCCTTGGCCACCTGCCGTGTTCCGGCACGTAACCCCCACC
ACAAAAGCATACAGATATATCCAAGATCGTCTGTCCACGATAACAAAAAA
GGGCGTGAAGGTAAACCTCTATCACAGAATCTGGATAACCGTTTGGGAAC
AAAATGTGGCTTCAATCGAGGCGCGGAGTATCCGAGCAAACTCTGTTCGG
GACGAGACCTCCGTTGGCGCCCCGACCACGAATGAGAACGGATGCGACAC
TTTGGGGGCTTGGAAACTGCGCCCACGATTTTTCTCTTGCAGGATGCGCG
CCGCATACGCTCGGAACTCGCGTACATTGTGGAACAGGTCGTGA
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