mRNA_P-fluviatile_contig11.1192.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1192.1
Unique NamemRNA_P-fluviatile_contig11.1192.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig11.1192.1 vs. uniprot
Match: A0A6H5KU03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU03_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 4.150e-99
Identity = 171/252 (67.86%), Postives = 188/252 (74.60%), Query Frame = 3
Query:  390 ARWDCWETDRQGRTALFWAAGGGSVEACTALVEGEGGLRPRDCGGDGSTPLHWAAAGVEARRFGTGGHVDVCRWLLHRGADPSATTSEGNTVVMWAAWAGGLDATRWAIEEAGXXXXXXXXXXXXXXXXXXS-GGDEAVCRYLHSKGVDFTRTNNGGNDPLNHAVAYGRRNIATWLLGEVYWGKGSLSPAGDGSLGEEPEV-GVREGVGAAXXXXXXXDERRSRRDDPRLLNLARLTGDDKMEALLLRMKDE 1139
            A WDCWETDR+GRTALFWAAGGGSVEAC ALVEGEGGLRP+D GGDGSTPLHWA AGVE RRFGTGGHV+VCRWLL+ G D  A TSEGNTV+MWAAWAGGLDATRWA+EEAG                  S GGDEAVCRYLHSKGVDFTR N GGNDPLNHAVAYGRRNIA WLLGE++  + +       S     ++ GV  G G+  XXXXXX       DDP LL LARLTGD+KM+A LL ++DE
Sbjct:  238 AWWDCWETDRRGRTALFWAAGGGSVEACEALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNVCRWLLNLGVDTKARTSEGNTVIMWAAWAGGLDATRWAVEEAGALDLDAANANGCTVAHWASSGGDEAVCRYLHSKGVDFTRRNKGGNDPLNHAVAYGRRNIAAWLLGEIHAERETPPXXXHRSSYSSVKLPGV--GDGSEAXXXXXXXXXXXXXDDPHLLELARLTGDEKMQAFLLGVEDE 487          
BLAST of mRNA_P-fluviatile_contig11.1192.1 vs. uniprot
Match: D8LGD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD8_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 2.220e-61
Identity = 107/146 (73.29%), Postives = 111/146 (76.03%), Query Frame = 3
Query:  396 WDCWETDRQGRTALFWAAGGGSVEACTALVEGEGGLRPRDCGGDGSTPLHWAAAGVEARRFGTGGHVDVCRWLLHRGADPSATTSEGNTVVMWAAWAGGLDATRWAIEEAGXXXXXXXXXXXXXXXXXXS-GGDEAVCRYLHSKGV 830
            WDCWETDR+GRTALFWAAGGGSVEAC ALVEGEGGLRP+D GGDGSTPLHWA AGVE RRFGTGGHV+VCRWLL  G D  A TSEGNTVVMWAAWAGGLDATRWA+EEAG                  S GGDEAVCR      V
Sbjct:  344 WDCWETDRRGRTALFWAAGGGSVEACKALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNVCRWLLDLGVDTKARTSEGNTVVMWAAWAGGLDATRWAVEEAGALDVDAANANGCTVAHWASSGGDEAVCRCFFESSV 489          
BLAST of mRNA_P-fluviatile_contig11.1192.1 vs. uniprot
Match: A0A7S3PXD8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXD8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.060e-25
Identity = 68/186 (36.56%), Postives = 100/186 (53.76%), Query Frame = 3
Query:  408 ETDRQGRTALFWAAGGGSVEACTALVEG-----EGGLRPRDCGGDGSTPLHWAAAGVEARRFGTGGHVDVCRWLLHRGADPSAT-------TSEGNTVVMWAAWAGGLDATRWAIEEAGXXXXXXXXXXXXXXXXXXSGGDEAVCRYLHS-KGVDFTRTNNGGNDPLNHAVAYGRRNIATWLLGEV 926
            E D +  + L W+AG G + +   L+       E  +R R    DG++ LHWAAAG EA+ FG GGH++VC++L+     PSA        T +GN+++MWAAW+G LD  +  +                      SGG+  +C+YL     +DFT  NN GN PL+HA+AYGR ++A WL  ++
Sbjct:  336 ERDVRDISLLHWSAGAGELGSLRQLIAALPGGMEEAVRLR-ADRDGASILHWAAAGSEAKAFGCGGHINVCKYLMENCGGPSAQKEVVNGLTKDGNSILMWAAWSGSLDVVKLVVRHRADPLVKNRNGCTVAHWAC-SGGNLELCKYLEEVMDLDFTEGNNAGNTPLSHAIAYGRLDVAQWLREDI 519          
BLAST of mRNA_P-fluviatile_contig11.1192.1 vs. uniprot
Match: R1CVS8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CVS8_EMIHU)

HSP 1 Score: 117 bits (293), Expect = 7.000e-25
Identity = 77/191 (40.31%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  408 ETDRQGRTALFWAAGGGSVEACTALVEGEGGLRPRDCGGDGSTPLHWAAAGVEARR-------FGTGGHVDVCRWLLHRGADPSATTSEGNTVVMWAAWAGGLDATRWAIEEAGXXXXXXXXXXXXXXXXXXSGGDEAVCRYL-HSKGVDFTRTNNGGNDPLNHAVAYGRRNIATWLLGEVYWGKGSLSPA 956
            + DR+G TAL  +AG G    C AL+     L   D   +G+TPLH+A AG+++RR       FGTGGHV   R LL RGADP+A TS+GN+VV WAAWAGG    R   EE G                  S G  + C+YL  S G+DF   N  G  PL  AV   R  +  WL+   +     L  A
Sbjct:   61 DRDRRGATALHLSAGHGHDSCCEALLPL---LDVNDHTREGATPLHFAVAGMKSRRGRGGQNGFGTGGHVSTARLLLDRGADPAAVTSDGNSVVHWAAWAGGTKLLRLLCEEHGQAAAAGAPNAA-------SSGALSSCKYLAESCGLDFGAPNAEGATPLTKAVVQSRPPVVEWLIASPHCSLADLREA 241          
BLAST of mRNA_P-fluviatile_contig11.1192.1 vs. uniprot
Match: A0A8J2X5G3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.140e-14
Identity = 76/173 (43.93%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  408 ETDRQGRTALFWAAGGGSVEACTALVEGEGGLRPRDCGGDGSTPLHWAAAGVEARRFGTGGHVDVCRWLLHRGADPSATTSEGNTVVMWAAWAGGLDATRWAIEEAGXXXXXXXXXXXXXXXXXXSGGDEAVCRYLHSK-GVDFTRTNNGGNDPLNHAVAYGRRNIATWLLGE 923
            + DR+G +A   AAG G+V+  +A                      WAA GV     GTG        LL  GAD  ATT +GN V+ WAAW GG+ A R       XXXXXXXXXXXXXXXXXX+GGD A   YL     VD    N  G+ PL HA AY R +I +WL+ E
Sbjct:  181 DRDRRGASAAHVAAGRGAVDVLSAXXXXXX-XXXXXXXXXXXXXXXWAACGVRGNAAGTGFEEGAAELLLSAGADACATTHDGNAVIHWAAWQGGVSAVR-TXXXXXXXXXXXXXXXXXXXXXXXAGGDTATLAYLRDVCRVDLRAPNAAGHTPLEHACAYKRTDIVSWLVSE 351          
BLAST of mRNA_P-fluviatile_contig11.1192.1 vs. uniprot
Match: B7FSM1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FSM1_PHATC)

HSP 1 Score: 82.0 bits (201), Expect = 1.140e-12
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  408 ETDRQGRTALFWAAGGGSVEAC-TALVEGEGGLRPRDCGGDGSTPLHWAAAGVEARRFGTGGHVDVCRWLLHRGADPSAT-------TSEGNTVVMWAAWAGGLDATR 707
            E D +G T L WAAG G++    T L     G+R      D +TPLHWAAAGV AR FGTGG V VC+WLL +              T +GN+ +MWA+W+G LD  +
Sbjct:  326 ERDHRGATLLHWAAGVGNLPGVQTLLPHFPQGVRVTTKR-DHATPLHWAAAGVNAREFGTGGSVKVCQWLLTQIETSDEVKRYVNQQTRDGNSPLMWASWSGTLDTVK 432          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KU03_9PHAE4.150e-9967.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGD8_ECTSI2.220e-6173.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3PXD8_9STRA2.060e-2536.56Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
R1CVS8_EMIHU7.000e-2540.31Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A8J2X5G3_9STRA5.140e-1443.93Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
B7FSM1_PHATC1.140e-1244.44Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2398692..2406419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue2.7e-16
Seed eggNOG ortholog159749.K0RR31
Preferred nameANKRD16
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
EggNOG free text desc.protein ubiquitination
EggNOG OGs2XCDN@2836,COG0666@1,KOG0504@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size1901
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1192.1prot_P-fluviatile_contig11.1192.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2399878..2405687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815465.3764706-UTR-P-fluviatile_contig11:2398691..23992901622815465.3764706-UTR-P-fluviatile_contig11:2398691..2399290Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2398692..2399290 +
1693561924.8416262-UTR-P-fluviatile_contig11:2398691..23992901693561924.8416262-UTR-P-fluviatile_contig11:2398691..2399290Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2398692..2399290 +
1622815465.4223814-UTR-P-fluviatile_contig11:2399808..23998771622815465.4223814-UTR-P-fluviatile_contig11:2399808..2399877Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2399809..2399877 +
1693561924.8508008-UTR-P-fluviatile_contig11:2399808..23998771693561924.8508008-UTR-P-fluviatile_contig11:2399808..2399877Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2399809..2399877 +
1622815465.4704897-UTR-P-fluviatile_contig11:2405687..24064191622815465.4704897-UTR-P-fluviatile_contig11:2405687..2406419Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2405688..2406419 +
1693561924.8834217-UTR-P-fluviatile_contig11:2405687..24064191693561924.8834217-UTR-P-fluviatile_contig11:2405687..2406419Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2405688..2406419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815465.4333003-CDS-P-fluviatile_contig11:2399877..23999151622815465.4333003-CDS-P-fluviatile_contig11:2399877..2399915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2399878..2399915 +
1693561924.8580627-CDS-P-fluviatile_contig11:2399877..23999151693561924.8580627-CDS-P-fluviatile_contig11:2399877..2399915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2399878..2399915 +
1622815465.443157-CDS-P-fluviatile_contig11:2402038..24021401622815465.443157-CDS-P-fluviatile_contig11:2402038..2402140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2402039..2402140 +
1693561924.868129-CDS-P-fluviatile_contig11:2402038..24021401693561924.868129-CDS-P-fluviatile_contig11:2402038..2402140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2402039..2402140 +
1622815465.4546103-CDS-P-fluviatile_contig11:2405326..24056871622815465.4546103-CDS-P-fluviatile_contig11:2405326..2405687Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2405327..2405687 +
1693561924.8758714-CDS-P-fluviatile_contig11:2405326..24056871693561924.8758714-CDS-P-fluviatile_contig11:2405326..2405687Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2405327..2405687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1192.1

>prot_P-fluviatile_contig11.1192.1 ID=prot_P-fluviatile_contig11.1192.1|Name=mRNA_P-fluviatile_contig11.1192.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=167bp
MWAAWAGGLDATRWAIEEAGADLGAANANGCTVGHWAASGGDEAVCRYLH
SKGVDFTRTNNGGNDPLNHAVAYGRRNIATWLLGEVYWGKGSLSPAGDGS
LGEEPEVGVREGVGAAAAAAAVADERRSRRDDPRLLNLARLTGDDKMEAL
LLRMKDETVVAVRGTQ*
back to top

mRNA from alignment at P-fluviatile_contig11:2398692..2406419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1192.1 ID=mRNA_P-fluviatile_contig11.1192.1|Name=mRNA_P-fluviatile_contig11.1192.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7728bp|location=Sequence derived from alignment at P-fluviatile_contig11:2398692..2406419+ (Porterinema fluviatile SAG_2381)
GCAGGCCTTCCTGAAAGGGCCGTTCGACGCGGCGAGGAACGGAGATGCAG AGACGCTGCGGCTTCTGCGATCTCACGGGTGGGAAGGAGCAGAGCAGAGC AGAGCAGAGCGGAGCAGGGTGTAGCAGAGTAGAGCAGAGCAGAGCAGAGC AAGCAGGGCATGGCAAAGCAGATCAGAACGGGGCAGAGTTGAGCTGAATA GCGTCGAGGTAGAATACGAACGTTATCCCCTCCCCCTCCACACACACAAA CAGACGGGGTGCACGTCCTGGGTGTGGGTTGAACCAAAACCCCGCACAAT TCATAGCAGCAAACTCCCGAGGTCTGTGGAAGGAGCCTGTCGGCCTTGTC CTCACATGTTGTTTTCATGTTCTGTCGTGAGATCATCCCGCCAGGTGGGA CTGCTGGGAGACCGACAGACAAGGCCGCACGGCGCTGTTCTGGGCTGCCG GCGGGGGGTCCGTCGAGGCCTGCACTGCGTTGGTCGAGGGGGAGGGGGGG CTGCGGCCTCGAGACTGCGGGGGCGACGGATCGACCCCTTTGCACTGGGC GGCGGCCGGAGTGGAGGCGCGACGGTTCGGCACTGGCGGGCACGTAGACG TGAGGGAGGTCGCGATCGAAGAAAAATCAATTTGGACTTTCGATAATTAA TTTGTTTCGGGAGAAAAGAGCAACTCTGCGCCGCGGCTCCGTAGCTCGCG CAGCCCCTGACGCCCCCCAGACTACAGTTTTGCAGAAGAACGTCGTGCTC CACAGAGCGAAGCGGTGAAGCGTTCATCTACCGGTATTTCAAGTTGTTTC TTGTCCTTGCTCACGTGTCGTCCGACCCGAAACACGGCGGACACGTCGAC GTGGCCTGCCAAGTCCACTGTGCACGCGTCAACTTGTTTCGCTCCTTCCT CTTGGTGGCCGTTGATGATCTACTCCAGAGTACATTGCTTGTTGAGTACG CCAAACCCCTCTGCTATTGCACCCAGTCTTCGTCCCCCACGCATTGGTTA TGGCCGGCGCTTATGTCGTTTGGCAGGGGACACTGAACCTCGCGCGGCCA GTCTCGCGGACGCCAAGAGTACCGATGTAAGACGCCTTTGCACCTTCTGT TTTCTGCCTCCCCCAAGGTTTGTCGATGGCTCCTGCACCGCGGCGCCGAC CCTTCTGCGACGACGTCCGAAGGAAATACCGTGGTCATGTGGGCCGCCTG GGCAGGAGGTCTCGACGCCACGAGGTTGGAAGATGCTGATTTGGGACAGA TGTTCGTGATATCCCAGACGAAGGGTGCTGATTTCGGCGAAGAATAACTT CTTTTCTCACTGGAAGATCATTCCACACGCAAAATAGTCACATGCAACGA ACGGGTCACGAGGAACGATGGTTTGGTAGCACGTCGGTGGTAAGAGAAAT TTTTTTTTTGGCGCCTCAAGGCGGCGGCTATCACACCATATGTACTTCGT ACTTCATATCTATTCTTTTGCGCTCGCGCCTGCACTGTGCGGACAGCTGC TTCGCGCATGCCACACGTGTTTGTTCAGGAGGGTAACAGCACACGGGAGC ATCTGACGTGTCCTGCATTCCCCAAACACTTGTTGTTGCTGCTGTTCGCT TCACATCAAGACCATCCCTTCTTTCCGTCCTGTACCCTTTTTGGTCCGTA CTGATGAACACTGTGTGTGTGTTTTCGTCACTTTATTGGCGACAGTCCCT CCGATCAAGGCGAGACGTGTACTACACTTTGCAGCGTATTTAGAGCACTA CACTTGTTCAGTGTATTTTTCTGTCCAGCTAGAACCAACCGTGGTCACAC AGGAGGGGGTAAACACCGGGACTTCTTTCTTCTTTTCATTTTTCTTTTTG TGCCCCACCTTCCTCCTGCGGCGCTTGCCTTCATTTTTATCGCGAGAAGG GTTCAGTCGTCACTTTCCCTCGTCGGCCGCTACGTCGTATTTTGTGTACT CACGAATCTAATCAGCTATTCACCGCTTTCGCTTTCTACTCCCAGATACG AAAGTGAAAAAAAAATACCCCCGCCGAGATTCAAACCCGTGACCTGGGTG CTAGAAGGTTACGAAGATACCAACTCGACCACCGGGGCAACCGCACACCC CCTACACTAGACGCTGTCAATTCCCGTGGTCACAGGATAGCTTACCTTTC TGAAGGTATCCAATAAGTAAACAGAAACAACGTGGGGCCGGAGGGTCCGC AAAGCAATGCAATTCAGACGCAGATGGTTTTGAGCCCTCCGCTGCCCCGA CACGCTGTGTGAGGCGGAGGCAATAAGAACAAATAAAACCGGAAAAGTCA AGATCACCACTCCGGGTACACCCCCACACCTGAATTGGTACCCCCACAAT GCCAGGGTTTCCGTGCCGGGTTTTTTCCCAGCCAGGCTAAAAATTAAGTC GAGTGCTCCACACCGATTGTATACGGAGGTATGACGAGAGACAAGCACAA ATACAACAATAAGCAACCTGCCAGAATCACAGGCAATGCATAAACAAACA GGACCACAGAGTTACATGTCACTGCCTGGTGGGGGAGGGAACAACCTTTT TATTAGTCAGGGGAATAAAACATCAATCTGCTACGTGTCGCGCGACGTGA TTCGCCTCGCCTCTCTTGTATTTTTCGCGACGTCTCTGCGCCACCTCTGG TGCCCCCCTCCCGCCCCATCGGTTTTTGCCGGCTTTGTGCCGCTGTTTGT CTTCATGTCTCGCTTGTTCGCTCGTTTACGGCTAGTCTCCTCCTCGCCCC TATGGCAGGAAGTCATAAACCGTTCAGCACCCTTTAACACCGCCGCGTGC CACAGTATTCCGCTTTGTGCCTTCGCGGCATCCGCCCAAAGCGATGTCGG GACCCCGAAGACGCACGTACGGTCGTCGGTAGAGCGGTGCGTCGCCCCGA ACGCCTTGAAGTCGTCCTCCCGGCACTCCTCCAAGCTCTGCTCCGTTCCG CCCTTGCCCGGGTCCTTCCCCCCCAACAGTTCCCCGAACATCAAGCTTCG GGAGTCGCCCGTCCGGCTGCCTGGCGACGGCCCCCGCAAACAGCAGGCGC CGCTGTCGGGCAGTGGCATCCGAGCTCTGGCAGCCGACCCTCTTCAGGGC CTAGGCGTAGGAAAAAACAGTAGCAGGCGGTGGAAGTCCTGCCTGGGGAC CAAAGCTCAGCCGCCCCAATATTGTCGATCGAGCTAACGAAACCGCCTGG CCTCAACATCCCCGACCCATTGTTGTTCGCGAGGCGCGTGTGCTACCCTT GATCTGTCTCCTCTCATCGCTTTTCAACATTTTATGCTCATTCGCGTGCC CTTGAAAACGATCGATGCATGCACACGCTCGACGGTGGCGACAGCAGGTG GGCGATTGAGGAGGCTGGCGCGGATCTAGGTGCGGCGAACGCGAATGGGT GCACCGTCGGTCACTGGGCCGCTTCTGGGGGCGACGAGGCCGTGTGCAGG TAGAGAGACCGTCGGCGTGCCCCCCCCCCCCCACAGGTCTCTACGCACGA AGCGACATGAAACCGTCCGACGACATATCCCTGTAAATCCATGCTGGCAC GAACACCCTCCCTGGTTCTTCACGCTAAGTGACTAACCAACAAGTGGGGC AAGGACGCCCCGGATACATAAAAAAAACTTGCGAAAAAAAATGAAGACGG TAATCGAGGGGAAAAATCCGGCCTCCGGGACGAAAACCCTCGCAAATATC GTCAAACAACAAGCAGATACCGTCGCTGTCGCACAGGAATCCAACGGTCG CACTACAAGGCAAACTATGCCGGCAAGTTCATCAACGTCTGCCGGTGCTT GGACACCTTGTCCCTGCTAAGGGCCTCGGTGAGCAGGGCTGCGTGCTGCT CCGACGACTTCACGTACTCGATCGTAACACGCCCGACCTGAACTCCCGAA TGAATGGAATCGTACGTCTATATGCTTGGCACGCCTGGAGCTCAGGGGGT TCTCCAACAGCGAGATAGCCCCCTGGTTGACCTCAAGGACCCTTATGCTA CCTCCTCTAGTCTCGGGCGCAACGAAGGAAAGCACCTTGTGCACAAATTA TGCCTCCTTCACACCATCGCCGGCAACAATGTACTCTGATTCCGTAGAGG ACGACGCAGTGATCCCCTGGGTCTTGCTGCTGTGGCTGACTACGGTTCCT CCGACTGTCGTAGCCAACCCGGACACAGAACGCCTGTCTACAGGGTCGTC AGCATAGCTGGTGTCTACATACACGGCCAATTCGAGTCCCGAGCCCCTCT GGTAGGTTATCCCCAGGTCCCTGGTACCTTTCAGATACGCCAGAATCTTT TGAATCGCCTTCCATTGCCTAGCGGTCGGCGCATGGGCGTGGCGTGCGAC CGCGCGTACCGCAAACGAAATTTCCGGCCTAGTCATAGTCGACAACCACA TCAGGCAACCGATTGCCTCTCTAACCGGCCAATCCCCCCCGCTTTCGCCG TTTCGCTTCGGCCCAAGATCGGCGTCAGTCGAGACGGGGATGAGGGAGGT CGTGTGCACGTCGAAACGATCAACAAGAGAGTCGATGTACGCGCTCTGGC TGACCTTAAGGGTGCCGGCTTCTAGGTCACGGTCAATACCACACCCATCA AACCACTTGCACTCCCCGAGGTCCTTGGTGGGGAACTTCTTGTTCAACGA AGCCAACAACTCGTCGCAGTCCTTGTCAGATCCCGCCACCAAGAGGTCGT CAACATAGATCGCAATTATCATCACCACGACCCCGTCAACAATCTTGCGG AAGATGCACGGGTCTGCCTTACTCTGCTCAAACCCGTTCTCCACCAACGT GTGAGCGGCGTGGTTCCCCCACTCCCACCCGCTCTGCTTCAGGCCGTAAA TAGCACTCTCACACTTTACGATCTTGTGGGAGTTGTCCCCGCTACCAGCG AGAACCTTTGTCAACACCAAGTCTTTGAGTGGGGCGTGGATGTACACCTG GACTACGTCTATGTGCCGCAACGACATGCCCTTCTCATTCGCCACTGAAA GCACTACTTTGATGGATGCAGCCGACGGGCAGGGAGAGGACGAATGGAAA AAGTCTACGCCGGGGACTTGCGTAAATTCCCGCGCTACCATCCGCGCCTT AAACCTTTCAATCTTCCCTTCCCTATTCGTCTTCCAACTGAAAACCCACT TCGAGGACACGTACGTGCTCCTCTTTGGGATCTCGTCTAAGAAAGAGAAA GTGTTCTTTTCATAGAGCCCATCTAAATCCTTCTCTTGGGCTTGCCTCCA GCCGGTACACAGACCTCTCTACATCAGCATCAGTCAGTGGGAGGGACTCT ACCTCACTTGGGAGCTTGCCAATGGGCGACACGGCTTCCTTCGCCGAGGC ACAAATGTTCAGCGGCTCCACCGCCACGTACTCGACCGGTTCAGAGGCAG GGTCAAACAGTGCGGGCCCCTCGGGGCGATCCTCGAGAGCGTCAAGCAGA AGTTTTTCGGTATCCGCGCGCTCCTTTCCGGCATCCTCGCGCTCCTCCAC CAGCGATTGCTCCGCCCACCCCTGCAGTGCCGCTAGCTCCATACGTGCCA GCCTCTCGCATGCCCCCTCTTCGGCGAACGGGGCGGACAACTCCGCGAAC TTCGGGTTTCGACGGGGTACCGTTCTACGGCTGCCGAGTATCTCACCCGT TTTGCCGTCGTTGGCGGGATTCCACTGCTCTCGCCGCGGGAGCGCCGGCA GGTCCGTCTCGCTCCCGCTGCTGCTGCTGCTGCTGCTGCTGCTTTCGTCG GCACCATCTCCGGTGCCGGCGCCGTCATCGCTGCTGCTGCTGCTGCTGCT GCTGCTGCGGAGGTCGGCGTCGCCGCCGCCCCCGCCGGTCGAGCCGGCCG GCGTGGTGTGGGCCCAGCCCTCGGGGGTAGAGCCCTCCCCGCTCGGGAAC GCGCCTCCCGCGCCCTCCCTGCTCCCGGCCAGCTGCGCCGCCATCGCCGG CGGCCCCGCGGTGCTCGGGGATATCACCGTCACGTCGGTCACGTCGAGGA TGGGACCTTCCGGCTCTCCCTCCCCTTCCTCGGCTTGACGTGTCCTTCCC ATCACCTCCGCCCCCGCAGAAGATTCGACGAGGCGAGGATGCACGAAAAC CATCGTGTTGAATGTATGTTACACAAGCTTGAGGTACAGACGTGTTGGGT GCCACGATTGAGTTTCCTGCTCCCAACCCTACTGGTGCTGATGCGGAGAT TCCTGAATCCCGTTCCCATGAGTGGTCGTGTCGTTCTTTCCGCTGGGAGG TGCGCTGCGCCCCTGCTTTCGGCTCAGGTGAATCAAAAGCGTGCAATTCA GCCAGCTGTTCAGGATGCGGGCTTCGTCGCTCGACGAAGTGGGGTGCTCG CGAAATGTCGGACATCGGCCGTTGCTCTAAAATATGGCTTCGGACGTTCA AGGCGCGAACGGCTCTCGCAATACGAATGCAATGGTAAAGGCACAAATGT TTTGTTGACGTTCGCCCGTGAGTGTGTGGGCCGCTCACGTGACGGTCGTG AATGAAGCGCCAAGCCGCAGAATCCTTGTCCATCTCACCGGCAAATGATA GCCCGCCGTTCCTTCTCATACCCGCTCCTTACCATTATCCCCCCCTTCCG CGCCCCCGTACACTCGCCGCCCATATCCCTCCCAGGTACCTGCATTCCAA GGGCGTGGATTTCACCCGCACAAACAACGGCGGGAACGATCCGCTCAATC ACGCTGTGGCGTATGGCCGGCGGAACATCGCCACTTGGCTTCTTGGAGAA GTGTACTGGGGAAAAGGATCGTTGTCGCCTGCTGGCGATGGGAGCCTTGG AGAAGAGCCCGAGGTCGGCGTGCGGGAGGGCGTTGGGGCAGCAGCAGCAG CAGCAGCGGTGGCAGATGAGCGAAGGAGTAGGCGGGACGACCCGCGCTTG CTCAATCTTGCCCGGCTCACGGGCGACGATAAAATGGAGGCCTTGCTTCT TAGAATGAAGGACGAGACGGTCGTTGCAGTCAGAGGTACTCAGTGACACG GGTTTTTCTTGAAAAAGGCGGAGGATTGAAGGCTCGGGATGGCAAGGGGG TGCACCTCAGGACTGAACCTATCCGTGCCAAGTAGTCACGGGTTTCTGAG CACGCTGCTCTGTTTGGGATGTGAGTGGGTTTCGCAGCTTCAAAGCGAGG TTGGTTTTGTGCTCCGTACAACGTGTACGTCACTGTGGCTTCTTTTGTAC GAGCTGCGCTTGACTGTGACTCCGTTTGGATCTTGTGCCGGAGCTGCAAA AAACACCTTGGCGTACACAGCACGGAACAAATCGTGGTGGGCGTCGTGGA GCGCAAAATCGCGATACAGCAATCGCGGCAATGTATTCTTCACTGTAGTT TTATGCAGGTCTCCCATCCGATGCTGGTTTGGTTTGAATTGGAGTGCGTC TGCGCAGACACGTTTTTTTAGTGCGTGCACAGTGGGAGCACAGGTTATGC ACCCCACCTAAAAACTACAACTAACAAGCATGTGAAGAGGCACTGTGTGC CCAGAGCTCAAAACTGTTGCGATTCACACCAGGTGTCGCAAATGGTTGAG GAGGGTGAGGATTTAAGTCGACGAGTGCGAAGGGGGGTGATAAGCTAAGG ATGCATCCTGCCCCCGAGGTCACGAAAATGGCGACAAGAGCTGACGGCCG ACCTGCGAAAGGGAACGGAAGCCTGCCATGCACGCTTGCTATGCTTAAGA TGGGACGAGTACCGAACGATTTCTACGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig11:2398692..2406419+

>mRNA_P-fluviatile_contig11.1192.1 ID=mRNA_P-fluviatile_contig11.1192.1|Name=mRNA_P-fluviatile_contig11.1192.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1002bp|location=Sequence derived from alignment at P-fluviatile_contig11:2398692..2406419+ (Porterinema fluviatile SAG_2381)
ATGTGGGCCGCCTGGGCAGGAGGTCTCGACGCCACGAGATGTGGGCCGCC
TGGGCAGGAGGTCTCGACGCCACGAGGTGGGCGATTGAGGAGGCTGGCGC
GGATCTAGGTGCGGCGAACGCGAATGGGTGCACCGTCGGTCACTGGGCCG
CTTCTGGGGGCGACGAGGCCGTGTGCAGGTGGGCGATTGAGGAGGCTGGC
GCGGATCTAGGTGCGGCGAACGCGAATGGGTGCACCGTCGGTCACTGGGC
CGCTTCTGGGGGCGACGAGGCCGTGTGCAGGTACCTGCATTCCAAGGGCG
TGGATTTCACCCGCACAAACAACGGCGGGAACGATCCGCTCAATCACGCT
GTGGCGTATGGCCGGCGGAACATCGCCACTTGGCTTCTTGGAGAAGTGTA
CTGGGGAAAAGGATCGTTGTCGCCTGCTGGCGATGGGAGCCTTGGAGAAG
AGCCCGAGGTCGGCGTGCGGGAGGGCGTTGGGGCAGCAGCAGCAGCAGCA
GCGGTGGCAGATGAGCGAAGGAGTAGGCGGGACGACCCGCGCTTGCTCAA
TCTTGCCCGGCTCACGGGCGACGATAAAATGGAGGCCTTGCTTCTTAGAA
TGAAGGACGAGACGGTCGTTGCAGTCAGAGGTACTCAGTGAGTACCTGCA
TTCCAAGGGCGTGGATTTCACCCGCACAAACAACGGCGGGAACGATCCGC
TCAATCACGCTGTGGCGTATGGCCGGCGGAACATCGCCACTTGGCTTCTT
GGAGAAGTGTACTGGGGAAAAGGATCGTTGTCGCCTGCTGGCGATGGGAG
CCTTGGAGAAGAGCCCGAGGTCGGCGTGCGGGAGGGCGTTGGGGCAGCAG
CAGCAGCAGCAGCGGTGGCAGATGAGCGAAGGAGTAGGCGGGACGACCCG
CGCTTGCTCAATCTTGCCCGGCTCACGGGCGACGATAAAATGGAGGCCTT
GCTTCTTAGAATGAAGGACGAGACGGTCGTTGCAGTCAGAGGTACTCAGT
GA
back to top