mRNA_P-fluviatile_contig1.596.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.596.1
Unique NamemRNA_P-fluviatile_contig1.596.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.596.1 vs. uniprot
Match: A0A6H5K5M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.170e-12
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:  786 GGASVVGEEVEAQRGGQPSELVVENTLPSSPAAGEEAEERA 908
            GGASVVGEEVEAQRGGQPSELVV+NTLPSSPAAGEEAEERA
Sbjct:   26 GGASVVGEEVEAQRGGQPSELVVDNTLPSSPAAGEEAEERA 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5M5_9PHAE1.170e-1297.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6415734..6416699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size966
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.596.1prot_P-fluviatile_contig1.596.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6416023..6416550 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.3835962-UTR-P-fluviatile_contig1:6415733..64160221622815271.3835962-UTR-P-fluviatile_contig1:6415733..6416022Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6415734..6416022 +
1693561323.466867-UTR-P-fluviatile_contig1:6415733..64160221693561323.466867-UTR-P-fluviatile_contig1:6415733..6416022Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6415734..6416022 +
1622815271.412004-UTR-P-fluviatile_contig1:6416550..64166991622815271.412004-UTR-P-fluviatile_contig1:6416550..6416699Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6416551..6416699 +
1693561323.483478-UTR-P-fluviatile_contig1:6416550..64166991693561323.483478-UTR-P-fluviatile_contig1:6416550..6416699Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6416551..6416699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.3958628-CDS-P-fluviatile_contig1:6416022..64165501622815271.3958628-CDS-P-fluviatile_contig1:6416022..6416550Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6416023..6416550 +
1693561323.4752352-CDS-P-fluviatile_contig1:6416022..64165501693561323.4752352-CDS-P-fluviatile_contig1:6416022..6416550Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6416023..6416550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.596.1

>prot_P-fluviatile_contig1.596.1 ID=prot_P-fluviatile_contig1.596.1|Name=mRNA_P-fluviatile_contig1.596.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=176bp
MCIFLTCLLQIARDFTAVPEPSLRHQLGGEITVKLALRTQRTDTRASRLV
VFSSHTLQYRGYDEYKTRLSPQKFMVRTQWLQQTSFFGVPSEEIVNVGIP
HFVVRMSASPIHQQLCWWFIRQKRLRQWLNRPHHLCRLWKLPQLVQWCSG
KSSILGNDRQRWQRQGRSVCGRRGG*
back to top

mRNA from alignment at P-fluviatile_contig1:6415734..6416699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.596.1 ID=mRNA_P-fluviatile_contig1.596.1|Name=mRNA_P-fluviatile_contig1.596.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=966bp|location=Sequence derived from alignment at P-fluviatile_contig1:6415734..6416699+ (Porterinema fluviatile SAG_2381)
CCAAGAGAGAAACACAAGAGAGGGGCGCACGAAAGCGAGGCGAAGGAGAG
CGAGCGTGCGAATAGGCGAGATAGAGAAACGTGTGTGTGATGTGCATGAT
GCGTGCGTGCGTGTGCATGCTCGTGCTGTGTGTGATAGGTGTTATGCGTT
GTTGAGAATATGGCGAGAGAGAAGACCAGTTCGTCGCAGCAAATATCGGC
AGTAGCGGCGGCAGCTACGACAGAGTGGAGCTAGCAAAGCACGCCGGTGG
CATTACAGTAGAGATCGCATCGAAAAAATATACCCGACCATGTGTATCTT
CTTGACCTGCCTGTTGCAAATCGCCAGAGACTTTACAGCAGTACCTGAGC
CAAGCCTGAGACACCAATTGGGCGGCGAAATTACAGTCAAACTCGCTCTT
AGAACACAACGCACCGACACACGCGCGTCTCGTCTCGTTGTTTTTTCCTC
GCATACCCTACAATACAGGGGATATGATGAATACAAAACACGATTGTCGC
CGCAAAAATTCATGGTGCGAACGCAATGGTTGCAGCAAACGTCCTTCTTT
GGCGTCCCATCGGAGGAAATAGTGAATGTCGGCATCCCCCATTTTGTGGT
CAGAATGTCGGCATCCCCGATCCATCAGCAGCTGTGTTGGTGGTTCATTC
GGCAAAAGAGGCTGCGCCAATGGTTGAACCGGCCTCATCATCTGTGCCGC
CTGTGGAAGCTTCCACAGCTGGTGCAGTGGTGCAGCGGCAAAAGCAGCAT
ACTTGGCAACGATCGGCAGCGGTGGCAGCGGCAGGGGCGGAGCGTCTGTG
GTCGGCGAGGAGGTTGAGGCTCAAAGGGGAGGGCAGCCATCAGAGTTGGT
GGTAGAAAACACATTGCCATCATCACCAGCGGCTGGCGAGGAAGCGGAGG
AGCGGGCGAAGTAAAGCAGACCCCTCCGCCAACGCCTGCGGTAGACACAG
TACAAGGAACAGCAGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:6415734..6416699+

>mRNA_P-fluviatile_contig1.596.1 ID=mRNA_P-fluviatile_contig1.596.1|Name=mRNA_P-fluviatile_contig1.596.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1056bp|location=Sequence derived from alignment at P-fluviatile_contig1:6415734..6416699+ (Porterinema fluviatile SAG_2381)
ATGTGTATCTTCTTGACCTGCCTGTTGCAAATCGCCAGAGACTTTACAGC
AGTACCTGAGCCAAGCCTGAGACACCAATTGGGCGGCGAAATTACAGTCA
AACTCGCTCTTAGAACACAACGCACCGACACACGCGCGTCTCGTCTCGTT
GTTTTTTCCTCGCATACCCTACAATACAGGGGATATGATGAATACAAAAC
ACGATTGTCGCCGCAAAAATTCATGGTGCGAACGCAATGGTTGCAGCAAA
CGTCCTTCTTTGGCGTCCCATCGGAGGAAATAGTGAATGTCGGCATCCCC
CATTTTGTGGTCAGAATGTCGGCATCCCCGATCCATCAGCAGCTGTGTTG
GTGGTTCATTCGGCAAAAGAGGCTGCGCCAATGGTTGAACCGGCCTCATC
ATCTGTGCCGCCTGTGGAAGCTTCCACAGCTGGTGCAGTGGTGCAGCGGC
AAAAGCAGCATACTTGGCAACGATCGGCAGCGGTGGCAGCGGCAGGGGCG
GAGCGTCTGTGGTCGGCGAGGAGGTTGAATGTGTATCTTCTTGACCTGCC
TGTTGCAAATCGCCAGAGACTTTACAGCAGTACCTGAGCCAAGCCTGAGA
CACCAATTGGGCGGCGAAATTACAGTCAAACTCGCTCTTAGAACACAACG
CACCGACACACGCGCGTCTCGTCTCGTTGTTTTTTCCTCGCATACCCTAC
AATACAGGGGATATGATGAATACAAAACACGATTGTCGCCGCAAAAATTC
ATGGTGCGAACGCAATGGTTGCAGCAAACGTCCTTCTTTGGCGTCCCATC
GGAGGAAATAGTGAATGTCGGCATCCCCCATTTTGTGGTCAGAATGTCGG
CATCCCCGATCCATCAGCAGCTGTGTTGGTGGTTCATTCGGCAAAAGAGG
CTGCGCCAATGGTTGAACCGGCCTCATCATCTGTGCCGCCTGTGGAAGCT
TCCACAGCTGGTGCAGTGGTGCAGCGGCAAAAGCAGCATACTTGGCAACG
ATCGGCAGCGGTGGCAGCGGCAGGGGCGGAGCGTCTGTGGTCGGCGAGGA
GGTTGA
back to top