mRNA_P-fluviatile_contig1.588.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.588.1
Unique NamemRNA_P-fluviatile_contig1.588.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6327652..6328450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size799
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.588.1prot_P-fluviatile_contig1.588.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6327941..6328408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.2946005-UTR-P-fluviatile_contig1:6327651..63279401622815271.2946005-UTR-P-fluviatile_contig1:6327651..6327940Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6327652..6327940 +
1693561323.4311929-UTR-P-fluviatile_contig1:6327651..63279401693561323.4311929-UTR-P-fluviatile_contig1:6327651..6327940Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6327652..6327940 +
1622815271.3155384-UTR-P-fluviatile_contig1:6328408..63284501622815271.3155384-UTR-P-fluviatile_contig1:6328408..6328450Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6328409..6328450 +
1693561323.4495397-UTR-P-fluviatile_contig1:6328408..63284501693561323.4495397-UTR-P-fluviatile_contig1:6328408..6328450Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6328409..6328450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.3048973-CDS-P-fluviatile_contig1:6327940..63284081622815271.3048973-CDS-P-fluviatile_contig1:6327940..6328408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6327941..6328408 +
1693561323.4406974-CDS-P-fluviatile_contig1:6327940..63284081693561323.4406974-CDS-P-fluviatile_contig1:6327940..6328408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6327941..6328408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.588.1

>prot_P-fluviatile_contig1.588.1 ID=prot_P-fluviatile_contig1.588.1|Name=mRNA_P-fluviatile_contig1.588.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=156bp
MKRQGDHGQSYTRVGRPCRRHPACVPNRFERSFGLEGEVLLEKYACCSLR
ACLFPPFPPCACRRHASCVPRRFERRRMYSIRRGSSCRCYLSCTHPLRHQ
SYSPFSPLSVVHIYPPHHRFAARSSVLDLTNANIPTETFRKITAVFSSCF
WRAVW*
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mRNA from alignment at P-fluviatile_contig1:6327652..6328450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.588.1 ID=mRNA_P-fluviatile_contig1.588.1|Name=mRNA_P-fluviatile_contig1.588.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=799bp|location=Sequence derived from alignment at P-fluviatile_contig1:6327652..6328450+ (Porterinema fluviatile SAG_2381)
GTGCCCAGGCGTTTTGAGAGGAGACGTATGTACTCCATTCGCCGAGGACC
CTCTTGTTGATGCTGTCTATCGTACACACACCCCTTCCACCACTCAGCTC
TCTTTCGGCGTGCCCATGTCACGGTCATACACACACTGTCCCAAAAAGCA
CGACGCTCGGCGCCCTGTTCACTCCAACTATTTTCCTTTTCGGCCTGTAT
TGTTTCGCTGATCTGTACCTACATGATTGTTTACCAAATTGATTTTCCCG
AGAGTCACCGCTCCTCTCACTCCTCGCACACATTCAGTGATGAAGAGGCA
GGGGGATCACGGGCAGAGTTACACGCGCGTAGGCCGACCTTGTAGAAGGC
ACCCTGCTTGTGTGCCCAACCGTTTTGAGAGATCCTTTGGTCTTGAAGGT
GAGGTACTTCTCGAAAAGTACGCGTGTTGCAGTCTACGCGCTTGCCTTTT
CCCACCTTTTCCACCCTGCGCTTGTAGAAGGCACGCTTCTTGTGTGCCCA
GGCGTTTTGAGAGGAGACGTATGTACTCCATTCGCCGAGGATCCTCTTGC
CGATGCTACCTATCGTGTACACACCCTCTCCGTCACCAGAGCTACTCCCC
ATTTTCCCCATTGTCTGTCGTACACATATACCCTCCCCACCACCGGTTTG
CCGCCCGCAGCAGTGTCTTAGATCTTACAAATGCAAATATACCCACTGAA
ACCTTTCGCAAGATCACAGCTGTTTTCAGTTCTTGTTTTTGGCGTGCTGT
GTGGTAGGAGATCGTCATATCTACCTGTGTACCGACCCCGAGTTGTCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6327652..6328450+

>mRNA_P-fluviatile_contig1.588.1 ID=mRNA_P-fluviatile_contig1.588.1|Name=mRNA_P-fluviatile_contig1.588.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=936bp|location=Sequence derived from alignment at P-fluviatile_contig1:6327652..6328450+ (Porterinema fluviatile SAG_2381)
ATGAAGAGGCAGGGGGATCACGGGCAGAGTTACACGCGCGTAGGCCGACC
TTGTAGAAGGCACCCTGCTTGTGTGCCCAACCGTTTTGAGAGATCCTTTG
GTCTTGAAGGTGAGGTACTTCTCGAAAAGTACGCGTGTTGCAGTCTACGC
GCTTGCCTTTTCCCACCTTTTCCACCCTGCGCTTGTAGAAGGCACGCTTC
TTGTGTGCCCAGGCGTTTTGAGAGGAGACGTATGTACTCCATTCGCCGAG
GATCCTCTTGCCGATGCTACCTATCGTGTACACACCCTCTCCGTCACCAG
AGCTACTCCCCATTTTCCCCATTGTCTGTCGTACACATATACCCTCCCCA
CCACCGGTTTGCCGCCCGCAGCAGTGTCTTAGATCTTACAAATGCAAATA
TACCCACTGAAACCTTTCGCAAGATCACAGCTGTTTTCAGTTCTTGTTTT
TGGCGTGCTGTGTGGTAGATGAAGAGGCAGGGGGATCACGGGCAGAGTTA
CACGCGCGTAGGCCGACCTTGTAGAAGGCACCCTGCTTGTGTGCCCAACC
GTTTTGAGAGATCCTTTGGTCTTGAAGGTGAGGTACTTCTCGAAAAGTAC
GCGTGTTGCAGTCTACGCGCTTGCCTTTTCCCACCTTTTCCACCCTGCGC
TTGTAGAAGGCACGCTTCTTGTGTGCCCAGGCGTTTTGAGAGGAGACGTA
TGTACTCCATTCGCCGAGGATCCTCTTGCCGATGCTACCTATCGTGTACA
CACCCTCTCCGTCACCAGAGCTACTCCCCATTTTCCCCATTGTCTGTCGT
ACACATATACCCTCCCCACCACCGGTTTGCCGCCCGCAGCAGTGTCTTAG
ATCTTACAAATGCAAATATACCCACTGAAACCTTTCGCAAGATCACAGCT
GTTTTCAGTTCTTGTTTTTGGCGTGCTGTGTGGTAG
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