mRNA_P-fluviatile_contig1.537.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.537.1
Unique NamemRNA_P-fluviatile_contig1.537.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.537.1 vs. uniprot
Match: A0A6H5JPD6_9PHAE (UDP-glucose 6-dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.210e-8
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = -1 
Query:  302 QVKRLQMFTEFDYTCGINKDNTPKLEESV-------SAARRAMGQSICSCEWGSRMSLSWPEVLTARRMTGTVF 502
            QVKR QMF EFDYTCG+NKDNTP+LEES+       SAA  +   +I + EW    +L +  +  +      VF
Sbjct:  282 QVKRSQMFVEFDYTCGVNKDNTPRLEESITTCEDAYSAANGSHALAILT-EWDEFKTLDYQRIYDSMAKPAFVF 354
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BLAST of mRNA_P-fluviatile_contig1.537.1 vs. uniprot
Match: D7FGR7_ECTSI (UDP-glucose 6-dehydrogenase n=2 Tax=Phaeophyceae TaxID=2870 RepID=D7FGR7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 8.790e-8
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = -1 
Query:  302 QVKRLQMFTEFDYTCGINKDNTPKLEESV-------SAARRAMGQSICSCEWGSRMSLSWPEVLTARRMTGTVF 502
            QVKR QMF EFDYTCG+NKDNTP+LEES+       SAA  +   +I + EW    +L +  +  +      VF
Sbjct:  360 QVKRSQMFVEFDYTCGVNKDNTPRLEESITTCEDAYSAAEGSHALAILT-EWDEFKTLDYQRIYDSMAKPAFVF 432
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BLAST of mRNA_P-fluviatile_contig1.537.1 vs. uniprot
Match: A0A1Z5J7G4_FISSO (UDP-glucose 6-dehydrogenase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7G4_FISSO)

HSP 1 Score: 52.4 bits (124), Expect = 7.380e-5
Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = -1 
Query:  329 QVKRLQMFTEFDYTCGINKDNTPKLEESVSAARRAMGQSICSCEWGSRMSL--SWPEVLT 502
            QVKR  M+ E DYTCG+NKDNTP+LEESV  A  A      +CE    + +   W E  T
Sbjct:  371 QVKREDMWIEMDYTCGMNKDNTPRLEESVVTAPDA----YAACEKAHALLILTEWDEFKT 426
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPD6_9PHAE8.210e-844.59UDP-glucose 6-dehydrogenase n=1 Tax=Ectocarpus sp.... [more]
D7FGR7_ECTSI8.790e-844.59UDP-glucose 6-dehydrogenase n=2 Tax=Phaeophyceae T... [more]
A0A1Z5J7G4_FISSO7.380e-548.33UDP-glucose 6-dehydrogenase n=2 Tax=Fistulifera so... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5801825..5802326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size502
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.537.1prot_P-fluviatile_contig1.537.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5801932..5802291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.077334-UTR-P-fluviatile_contig1:5801824..58019311622815271.077334-UTR-P-fluviatile_contig1:5801824..5801931Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5801825..5801931 +
1693561323.3418431-UTR-P-fluviatile_contig1:5801824..58019311693561323.3418431-UTR-P-fluviatile_contig1:5801824..5801931Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5801825..5801931 +
1622815271.1015542-UTR-P-fluviatile_contig1:5802291..58023261622815271.1015542-UTR-P-fluviatile_contig1:5802291..5802326Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5802292..5802326 +
1693561323.3590603-UTR-P-fluviatile_contig1:5802291..58023261693561323.3590603-UTR-P-fluviatile_contig1:5802291..5802326Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5802292..5802326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.090029-CDS-P-fluviatile_contig1:5801931..58022911622815271.090029-CDS-P-fluviatile_contig1:5801931..5802291Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5801932..5802291 +
1693561323.350975-CDS-P-fluviatile_contig1:5801931..58022911693561323.350975-CDS-P-fluviatile_contig1:5801931..5802291Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5801932..5802291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.537.1

>prot_P-fluviatile_contig1.537.1 ID=prot_P-fluviatile_contig1.537.1|Name=mRNA_P-fluviatile_contig1.537.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
MAMLPQAERVTSDAHYPCFQACRIAHVFLFASMKNRIPSLVCIAKLFAEV
YFVSFFWFWEGKQRTKTVPVIRRAVRTSGQESDIREPHSQEQMDCPIARR
AALTDSSSFGVLSLLMPQV*
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mRNA from alignment at P-fluviatile_contig1:5801825..5802326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.537.1 ID=mRNA_P-fluviatile_contig1.537.1|Name=mRNA_P-fluviatile_contig1.537.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=502bp|location=Sequence derived from alignment at P-fluviatile_contig1:5801825..5802326+ (Porterinema fluviatile SAG_2381)
CGACAAGCGATTGACAGCGGCAGCAGCAGCAGTATGGCGTCGGAGGGCCG
AAAGACACCCCACAGCACAGCGCATATCAATCGCAACCGAACCAACATGA
CGCCGAGATGGCAATGTTACCGCAAGCGGAGAGGGTTACATCCGACGCTC
ACTATCCCTGCTTCCAGGCATGCCGTATTGCGCACGTTTTTCTATTCGCA
TCGATGAAAAACAGGATTCCGTCGCTCGTGTGTATTGCCAAGTTGTTCGC
CGAGGTTTATTTCGTCTCATTTTTTTGGTTTTGGGAAGGCAAACAGCGAA
CAAAGACGGTGCCGGTCATTCGACGCGCGGTGAGGACTTCGGGCCAAGAG
AGTGACATCCGCGAACCCCATTCGCAAGAACAAATGGACTGCCCCATTGC
ACGTCGTGCTGCACTGACCGATTCCTCGAGCTTCGGGGTGTTGTCTTTGT
TGATGCCGCAAGTGTAGTCGAACTCCGTGAACATCTGGAGCCGCTTCACC
TG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5801825..5802326+

>mRNA_P-fluviatile_contig1.537.1 ID=mRNA_P-fluviatile_contig1.537.1|Name=mRNA_P-fluviatile_contig1.537.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=720bp|location=Sequence derived from alignment at P-fluviatile_contig1:5801825..5802326+ (Porterinema fluviatile SAG_2381)
ATGGCAATGTTACCGCAAGCGGAGAGGGTTACATCCGACGCTCACTATCC
CTGCTTCCAGGCATGCCGTATTGCGCACGTTTTTCTATTCGCATCGATGA
AAAACAGGATTCCGTCGCTCGTGTGTATTGCCAAGTTGTTCGCCGAGGTT
TATTTCGTCTCATTTTTTTGGTTTTGGGAAGGCAAACAGCGAACAAAGAC
GGTGCCGGTCATTCGACGCGCGGTGAGGACTTCGGGCCAAGAGAGTGACA
TCCGCGAACCCCATTCGCAAGAACAAATGGACTGCCCCATTGCACGTCGT
GCTGCACTGACCGATTCCTCGAGCTTCGGGGTGTTGTCTTTGTTGATGCC
GCAAGTGTAGATGGCAATGTTACCGCAAGCGGAGAGGGTTACATCCGACG
CTCACTATCCCTGCTTCCAGGCATGCCGTATTGCGCACGTTTTTCTATTC
GCATCGATGAAAAACAGGATTCCGTCGCTCGTGTGTATTGCCAAGTTGTT
CGCCGAGGTTTATTTCGTCTCATTTTTTTGGTTTTGGGAAGGCAAACAGC
GAACAAAGACGGTGCCGGTCATTCGACGCGCGGTGAGGACTTCGGGCCAA
GAGAGTGACATCCGCGAACCCCATTCGCAAGAACAAATGGACTGCCCCAT
TGCACGTCGTGCTGCACTGACCGATTCCTCGAGCTTCGGGGTGTTGTCTT
TGTTGATGCCGCAAGTGTAG
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