mRNA_P-fluviatile_contig1.516.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.516.1
Unique NamemRNA_P-fluviatile_contig1.516.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5669050..5669649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.8236525-CDS-P-fluviatile_contig1:5669049..56693551622815270.8236525-CDS-P-fluviatile_contig1:5669049..5669355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5669050..5669355 +
1693561323.164997-CDS-P-fluviatile_contig1:5669049..56693551693561323.164997-CDS-P-fluviatile_contig1:5669049..5669355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5669050..5669355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.8501174-UTR-P-fluviatile_contig1:5669355..56696491622815270.8501174-UTR-P-fluviatile_contig1:5669355..5669649Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5669356..5669649 +
1693561323.1758685-UTR-P-fluviatile_contig1:5669355..56696491693561323.1758685-UTR-P-fluviatile_contig1:5669355..5669649Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5669356..5669649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.516.1prot_P-fluviatile_contig1.516.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5669050..5669355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.516.1

>prot_P-fluviatile_contig1.516.1 ID=prot_P-fluviatile_contig1.516.1|Name=mRNA_P-fluviatile_contig1.516.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
TWSKLSTSATRRRRAHHKRRISTLPPVWLHLNRGHRFPLPGRRSDVYSGP
TGADAPLLPSPDGFGIWRVPLRIFFYMFPFTAPLASQTASAATTDGLSLP
S*
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mRNA from alignment at P-fluviatile_contig1:5669050..5669649+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.516.1 ID=mRNA_P-fluviatile_contig1.516.1|Name=mRNA_P-fluviatile_contig1.516.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=600bp|location=Sequence derived from alignment at P-fluviatile_contig1:5669050..5669649+ (Porterinema fluviatile SAG_2381)
ACATGGAGCAAGCTCTCGACCTCAGCAACACGACGCAGACGCGCACACCA
TAAAAGACGCATAAGCACTTTACCTCCTGTGTGGTTGCACCTGAACCGTG
GGCACCGATTTCCACTTCCGGGCAGGAGGAGCGATGTCTACTCAGGCCCA
ACCGGAGCCGATGCCCCCCTCCTTCCTTCACCTGATGGATTTGGAATTTG
GCGAGTCCCCCTCCGCATTTTTTTTTATATGTTCCCCTTCACTGCACCGC
TAGCGTCTCAAACCGCTTCCGCTGCAACAACGGACGGGCTTTCGCTGCCA
TCTTGACACTTGGGCTGGCCATCGTCGGCATTTGGTGGTGAGCCATCACT
GTCGGAGTAAGCCCTTGGGCACGACCTCCAATACCCTAAACGGATCGCAC
AAACCCCGTAGAACCTACCAGTCTACCCTCGGCTCAGCCTTCTCGGGGCA
CATCTGAGTATGACTTTCCTTGGGAGCTGATCGTTTTTGTTGCTTCTTCT
CGAAGAATATTGTAATGTACTTGATTAAGTCCGTATCCTCCGTGCCTCTT
CCAGCTGAAGGGCAACTGAACGATGCGAAATGCTTCGAGGATATCCTGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5669050..5669649+

>mRNA_P-fluviatile_contig1.516.1 ID=mRNA_P-fluviatile_contig1.516.1|Name=mRNA_P-fluviatile_contig1.516.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig1:5669050..5669649+ (Porterinema fluviatile SAG_2381)
ACATGGAGCAAGCTCTCGACCTCAGCAACACGACGCAGACGCGCACACCA
TAAAAGACGCATAAGCACTTTACCTCCTGTGTGGTTGCACCTGAACCGTG
GGCACCGATTTCCACTTCCGGGCAGGAGGAGCGATGTCTACTCAGGCCCA
ACCGGAGCCGATGCCCCCCTCCTTCCTTCACCTGATGGATTTGGAATTTG
GCGAGTCCCCCTCCGCATTTTTTTTTATATGTTCCCCTTCACTGCACCGC
TAGCGTCTCAAACCGCTTCCGCTGCAACAACGGACGGGCTTTCGCTGCCA
TCTTGAACATGGAGCAAGCTCTCGACCTCAGCAACACGACGCAGACGCGC
ACACCATAAAAGACGCATAAGCACTTTACCTCCTGTGTGGTTGCACCTGA
ACCGTGGGCACCGATTTCCACTTCCGGGCAGGAGGAGCGATGTCTACTCA
GGCCCAACCGGAGCCGATGCCCCCCTCCTTCCTTCACCTGATGGATTTGG
AATTTGGCGAGTCCCCCTCCGCATTTTTTTTTATATGTTCCCCTTCACTG
CACCGCTAGCGTCTCAAACCGCTTCCGCTGCAACAACGGACGGGCTTTCG
CTGCCATCTTGA
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