mRNA_P-fluviatile_contig11.1071.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1071.1
Unique NamemRNA_P-fluviatile_contig11.1071.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:1026001..1026787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size787
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1071.1prot_P-fluviatile_contig11.1071.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 1026255..1026683 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.731159-UTR-P-fluviatile_contig11:1026000..10262541622815428.731159-UTR-P-fluviatile_contig11:1026000..1026254Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1026001..1026254 +
1693561814.4403036-UTR-P-fluviatile_contig11:1026000..10262541693561814.4403036-UTR-P-fluviatile_contig11:1026000..1026254Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1026001..1026254 +
1622815428.7524576-UTR-P-fluviatile_contig11:1026683..10267871622815428.7524576-UTR-P-fluviatile_contig11:1026683..1026787Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1026684..1026787 +
1693561814.460012-UTR-P-fluviatile_contig11:1026683..10267871693561814.460012-UTR-P-fluviatile_contig11:1026683..1026787Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1026684..1026787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.7422628-CDS-P-fluviatile_contig11:1026254..10266831622815428.7422628-CDS-P-fluviatile_contig11:1026254..1026683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1026255..1026683 +
1693561814.450191-CDS-P-fluviatile_contig11:1026254..10266831693561814.450191-CDS-P-fluviatile_contig11:1026254..1026683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1026255..1026683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1071.1

>prot_P-fluviatile_contig11.1071.1 ID=prot_P-fluviatile_contig11.1071.1|Name=mRNA_P-fluviatile_contig11.1071.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
MEKYGVYFRACGPLTSTCLVKHCSLIHSFCVTCILEGRISDIIEHQSSTT
SLLGACTINMCPVHFNIPAKCRAEYVDEKPWMTTRVRGTASAYGPYRIRT
TLQSRLAPKHSLGPWTSCPLTRVWGKDARSTRPSFLCKNRNE*
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mRNA from alignment at P-fluviatile_contig11:1026001..1026787+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1071.1 ID=mRNA_P-fluviatile_contig11.1071.1|Name=mRNA_P-fluviatile_contig11.1071.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=787bp|location=Sequence derived from alignment at P-fluviatile_contig11:1026001..1026787+ (Porterinema fluviatile SAG_2381)
CAGGTCGTCATCGACAGCGAAGAATTGGTCAGACAGCGCCATGGTGTCTG
GCGAATATTCGTGGGGGGGATTCACGGTCGGGGTGTGACGAGGGGTGAGC
GAGCGTCGAGACTCGTTCGGGTTGTTTGTGGTGGTACTCCAGAGTGGCCA
CAACGGTTGCACAGCAGCATGGACAAGGTGTCATCAGATTGGAGGGCAGA
GGAAACAACACACTACGTCAAAGACAGATCGTTCAAATCAATGCACCTGT
TCAAATGGAAAAGTACGGAGTATATTTTAGGGCCTGTGGTCCACTCACGT
CCACGTGCCTAGTAAAACATTGCTCGCTTATCCACTCCTTTTGTGTGACT
TGCATTCTGGAGGGTCGTATCTCCGACATAATTGAACATCAAAGCAGCAC
GACATCTCTTCTCGGGGCCTGCACGATCAACATGTGCCCGGTACACTTCA
ATATACCTGCCAAGTGTCGAGCTGAGTACGTCGACGAAAAGCCATGGATG
ACCACGCGTGTGCGTGGTACAGCATCGGCGTATGGACCGTACCGTATCCG
AACGACGCTCCAATCCAGGTTAGCGCCAAAGCACTCACTAGGTCCGTGGA
CGTCTTGCCCTCTCACTCGTGTCTGGGGAAAGGACGCACGATCAACGCGA
CCCTCGTTCCTTTGCAAGAACAGAAACGAATGAAGCACACGCCGCACTCT
TACCTATCATTAGGTCCGGCAGCTTGTCCCCGTTAGGATATCGAAAGAAC
CCGAACGTCGGAACTCCCATGTGGAGGCCAAGGATGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:1026001..1026787+

>mRNA_P-fluviatile_contig11.1071.1 ID=mRNA_P-fluviatile_contig11.1071.1|Name=mRNA_P-fluviatile_contig11.1071.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig11:1026001..1026787+ (Porterinema fluviatile SAG_2381)
ATGGAAAAGTACGGAGTATATTTTAGGGCCTGTGGTCCACTCACGTCCAC
GTGCCTAGTAAAACATTGCTCGCTTATCCACTCCTTTTGTGTGACTTGCA
TTCTGGAGGGTCGTATCTCCGACATAATTGAACATCAAAGCAGCACGACA
TCTCTTCTCGGGGCCTGCACGATCAACATGTGCCCGGTACACTTCAATAT
ACCTGCCAAGTGTCGAGCTGAGTACGTCGACGAAAAGCCATGGATGACCA
CGCGTGTGCGTGGTACAGCATCGGCGTATGGACCGTACCGTATCCGAACG
ACGCTCCAATCCAGGTTAGCGCCAAAGCACTCACTAGGTCCGTGGACGTC
TTGCCCTCTCACTCGTGTCTGGGGAAAGGACGCACGATCAACGCGACCCT
CGTTCCTTTGCAAGAACAGAAACGAATGAATGGAAAAGTACGGAGTATAT
TTTAGGGCCTGTGGTCCACTCACGTCCACGTGCCTAGTAAAACATTGCTC
GCTTATCCACTCCTTTTGTGTGACTTGCATTCTGGAGGGTCGTATCTCCG
ACATAATTGAACATCAAAGCAGCACGACATCTCTTCTCGGGGCCTGCACG
ATCAACATGTGCCCGGTACACTTCAATATACCTGCCAAGTGTCGAGCTGA
GTACGTCGACGAAAAGCCATGGATGACCACGCGTGTGCGTGGTACAGCAT
CGGCGTATGGACCGTACCGTATCCGAACGACGCTCCAATCCAGGTTAGCG
CCAAAGCACTCACTAGGTCCGTGGACGTCTTGCCCTCTCACTCGTGTCTG
GGGAAAGGACGCACGATCAACGCGACCCTCGTTCCTTTGCAAGAACAGAA
ACGAATGA
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